The microevolution of V1r vomeronasal receptor genes in mice

Genome Biology and Evolution

Volumn 3, Issue 1, 2011, Pages 401-412

  Park, Seong Hwan ^a,b,c   Podlaha, Ondrej ^a   Grus, Wendy E ^a   Zhang, Jianzhi ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b Korea University College of Medicine   (South Korea)

^c Hallym University   (South Korea)

Author keywords

Evolution; Mus domesticus; Mus musculus; Pheromone detection; V1r; Vomeronasal receptor

Indexed keywords

SPACER DNA;

ALLELE; ANIMAL; ARTICLE; CHROMOSOME SEGREGATION; GENETIC VARIABILITY; GENETICS; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOUSE; OLFACTORY RECEPTOR; PHYLOGENY; SPECIES DIFFERENCE; VOMERONASAL ORGAN;

ALLELES; ANIMALS; CHROMOSOME SEGREGATION; DNA, INTERGENIC; EVOLUTION, MOLECULAR; GENETIC VARIATION; MICE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECEPTORS, ODORANT; SPECIES SPECIFICITY; VOMERONASAL ORGAN;

MAMMALIA; MUS; MUS MUSCULUS; MUS MUSCULUS DOMESTICUS; VERTEBRATA;

EID: 79960094290     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evr039     Document Type: Article

References (64)

1. Alibert P, FelClair F, Manolakou K, BrittonDavidian J, Auffray JC. 1997. Developmental stability, fitness, and trait size in laboratory hybrids between European subspecies of the house mouse. Evolution. 51:1284-1295. (Pubitemid 27393150)
2. Baines JF, Harr B. 2007. Reduced X-linked diversity in derived populations of house mice. Genetics. 175:1911-1921. (Pubitemid 46789972)
3. Brennan PA, Keverne EB. 2004. Something in the air? New insights into mammalian pheromones. Curr Biol. 14:R81-R89. (Pubitemid 38203918)
4. Britton-Davidian J, Fel-Clair F, Lopez J, Alibert P, Boursot P. 2005. Postzygotic isolation between the two European subspecies of the house mouse: estimates from fertility patterns in wild and laboratory-bred hybrids. Biol J Linn Soc Lond. 84:379-393. (Pubitemid 40441045)
5. Dulac C, Torello AT. 2003. Molecular detection of pheromone signals in mammals: from genes to behaviour. Nat Rev Neurosci. 4:551-562. (Pubitemid 37271366)
6. Forejt J. 1996. Hybrid sterility in the mouse. Trends Genet. 12:412-417. (Pubitemid 26336484)
7. Forejt J, Ivanyi P. 1974. Genetic studies on male sterility of hybrids between laboratory and wild mice (Mus musculus L.). Genet Res. 24:189-206.
8. Frazer KA, et al. 2007. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature. 448:1050-1053. (Pubitemid 47345584)
9. Fu YX, Li WH. 1993. Statistical tests of neutrality of mutations. Genetics 133:693-709.
10. Gibbs RA, et al. 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428:493-521.
11. Grus WE, Shi P, Zhang J. 2007. Largest vertebrate vomeronasal type 1 receptor gene repertoire in the semiaquatic platypus. Mol Biol Evol. 24:2153-2157. (Pubitemid 47574727)
12. Grus WE, Shi P, Zhang YP, Zhang J. 2005. Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals. Proc Natl Acad Sci U S A. 102:5767-5772. (Pubitemid 40559634)
13. Grus WE, Zhang J. 2004. Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats. Gene. 340:303-312. (Pubitemid 39314653)
14. Grus WE, Zhang J. 2006. Origin and evolution of the vertebrate vomeronasal system viewed through system-specific genes. Bio-Essays. 28:709-718. (Pubitemid 44257274)
15. Grus WE, Zhang J. 2008. Distinct evolutionary patterns between chemoreceptors of 2 vertebrate olfactory systems and the differential tuning hypothesis. Mol Biol Evol. 25:1593-1601. (Pubitemid 352019842)
16. Grus WE, Zhang J. 2009. Origin of the genetic components of the vomeronasal system in the common ancestor of all extant vertebrates. Mol Biol Evol. 26:407-419.
17. Guenet JL, Bonhomme F. 2003. Wild mice: an ever-increasing contribution to a popular mammalian model. Trends Genet 19:24-31. (Pubitemid 35472175)
18. Hasin Y, et al. 2008. High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution. PLoS Genet. 4:e1000249.
19. Hudson RR, Kreitman M, Aguade M. 1987. A test of neutral molecular evolution based on nucleotide data. Genetics. 116:153-159.
20. Karn RC, Young JM, Laukaitis CM. 2010. A candidate subspecies discrimination system involving a vomeronasal receptor gene with different alleles fixed in M. m. domesticus and M. m. musculus. PLoS One. 5:e12638.
21. Kurzweil VC, Getman M, Green ED, Lane RP. 2009. Dynamic evolution of V1R putative pheromone receptors between Mus musculus and Mus spretus. BMC Genomics. 10:74.
22. Laukaitis CM, Critser ES, Karn RC. 1997. Salivary androgen-binding protein (ABP) mediates sexual isolation in Mus musculus. Evolution. 51:2000-2005. (Pubitemid 28104557)
23. Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451-1452.
24. McDonald JH, Kreitman M. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature. 351:652-654. (Pubitemid 21896661)
25. Mombaerts P. 1999. Molecular biology of odorant receptors in vertebrates. Annu Rev Neurosci. 22:487-509. (Pubitemid 29144895)
26. Mombaerts P. 2004. Genes and ligands for odorant, vomeronasal and taste receptors. Nat Rev Neurosci. 5:263-278. (Pubitemid 38478654)
27. Moulia C, et al. 1991. Wormy mice in a hybrid zone-a genetic-control of susceptibility to parasite infection. J Evol Biol. 4:679-687.
28. Moulia C, Le Brun N, Dallas J, Orth A, Renaud F. 1993. Experimental evidence of genetic determinism in high susceptibility to intestinal pinworm infection in mice: a hybrid zone model. Parasitology. 106(Pt 4):387-393. (Pubitemid 23130684)
29. Nei M, Rooney AP. 2005. Concerted and birth-and-death evolution of multigene families. Annu Rev Genet. 39:121-152. (Pubitemid 43011110)
30. Niimura Y. 2009. On the origin and evolution of vertebrate olfactory receptor genes: comparative genome analysis among 23 chordate species. Genome Biol Evol. 1:34-44.
31. Nozawa M, Kawahara Y, Nei M. 2007. Genomic drift and copy number variation of sensory receptor genes in humans. Proc Natl Acad Sci U S A. 104:20421-20426.
32. Restrepo D, Arellano J, Oliva AM, Schaefer ML, Lin W. 2004. Emerging views on the distinct but related roles of the main and accessory olfactory systems in responsiveness to chemosensory signals in mice. Horm Behav. 46:247-256. (Pubitemid 39485780)
33. Rodriguez I, Del Punta K, Rothman A, Ishii T, Mombaerts P. 2002. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Nat Neurosci. 5:134-140. (Pubitemid 34121580)
34. Rodriguez I, Mombaerts P. 2002. Novel human vomeronasal receptorlike genes reveal species-specific families. Curr Biol. 12:R409-R411. (Pubitemid 34703315)
35. Sage R, Atchley W, Capanna E. 1993. House mice as models in systematic biology. Syst Biol. 42:523-561.
36. Sage RD, Heyneman D, Lim KC, Wilson AC. 1986. Wormy mice in a hybrid zone. Nature. 324:60-63.
37. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406-425.
38. Salcedo T, Geraldes A, Nachman MW. 2007. Nucleotide variation in wild and inbred mice. Genetics. 177:2277-2291.
39. Shi P, Bielawski JP, Yang H, Zhang YP. 2005. Adaptive diversification of vomeronasal receptor 1 genes in rodents. J Mol Evol. 60:566-576. (Pubitemid 40896556)
40. Shi P, Zhang J. 2007. Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Res. 17:166-174. (Pubitemid 46220761)
41. Shi P, Zhang J. 2009. Extraordinary diversity of chemosensory receptor gene repertoires among vertebrates. In: Meyerhof W, Korsching S, editors. Chemosensory systems in mammals, fishes, and insects. Berlin (Germany): Springer. pp. 1-23.
42. Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH. 2004. Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell. 16:1220-1234. (Pubitemid 38641516)
43. Smadja C, Catalan J, Ganem G. 2004. Strong premating divergence in a unimodal hybrid zone between two subspecies of the house mouse. J Evol Biol. 17:165-176. (Pubitemid 38162190)
44. Smadja C, Ganem G. 2002. Subspecies recognition in the house mouse: a study of two populations from the border of a hybrid zone. Behav Ecol. 13:312-320. (Pubitemid 35249705)
45. Spehr M, Spehr J, Ukhanov K, Kelliher KR, Leinders-Zufall T, Zufall F. 2006. Parallel processing of social signals by the mammalian main and accessory olfactory systems. Cell Mol Life Sci. 63:1476-1484. (Pubitemid 44156744)
46. Stewart R, Lane RP. 2007. V1R promoters are well conserved and exhibit common putative regulatory motifs. BMC Genomics. 8:253.
47. Storchova R, Gregorova S, Buckiova D, Kyselova V, Divina P, Forejt J. 2004. Genetic analysis of X-linked hybrid sterility in the house mouse. Mamm Genome. 15:515-524. (Pubitemid 38798842)
48. Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585-595. (Pubitemid 19274682)
49. Takami S. 2002. Recent progress in the neurobiology of the vomeronasal organ. Microsc Res Tech. 58:228-250. (Pubitemid 34832828)
50. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599. (Pubitemid 47236692)
51. Trachtulec Z, Mihola O, Vlcek C, Himmelbauer H, Paces V, Forejt J. 2005. Positional cloning of the Hybrid sterility 1 gene: fine genetic mapping and evaluation of two candidate genes. Biol J Linn Soc. 84:637-641. (Pubitemid 40441064)
52. Tucker PK. 2007. Systematics of the genus Mus. In: Fox J, et al., editors. Mouse in Biomedical Research, 2nd ed. Boston: Elsevier Press. p. 13-23.
53. Vyskocilova M, Trachtulec Z, Forejtv J, Pialek J. 2005. Does geography matter in hybrid sterility in house mice? Biol J Linn Soc Lond. 84:663-674. (Pubitemid 40441067)
54. Yang H, Bell TA, Churchill GA, Pardo-Manuel de Villena F. 2007. On the subspecific origin of the laboratory mouse. Nat Genet. 39:1100-1107. (Pubitemid 47340646)
55. Yang H, Shi P, Zhang YP, Zhang J. 2005. Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats. Genomics. 86:306-315. (Pubitemid 41096700)
56. Young JM, Endicott RM, Parghi SS, Walker M, Kidd JM, Trask BJ. 2008. Extensive copy-number variation of the human olfactory receptor gene family. Am J Hum Genet. 83:228-242.
57. Young JM, Kambere M, Trask BJ, Lane RP. 2005. Divergent V1R repertoires in five species: amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs. Genome Res. 15:231-240. (Pubitemid 40309387)
58. Young JM, Massa HF, Hsu L, Trask BJ. 2010. Extreme variability among mammalian V1R gene families. Genome Res. 20:10-18.
59. Young JM, Trask BJ. 2007. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 23:212-215. (Pubitemid 46616968)
60. Zhang J. 2007. The drifting human genome. Proc Natl Acad Sci U S A. 104:20147-20148.
61. Zhang J, Kumar S, Nei M. 1997. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Mol Biol Evol. 14:1335-1338.
62. Zhang J, Webb DM. 2003. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. Proc Natl Acad Sci U S A. 100:8337-8341. (Pubitemid 36842546)
63. Zhang X, Rodriguez I, Mombaerts P, Firestein S. 2004. Odorant and vomeronasal receptor genes in two mouse genome assemblies. Genomics. 83:802-811. (Pubitemid 38469922)
64. Zhao H, Xu D, Zhang S, Zhang J. 2011. Widespread losses of vomeronasal signal transduction in bats. Mol Biol Evol. 28:7-12.