Amplified on-chip fluorescence detection of DNA hybridization by surface-initiated enzymatic polymerization

Analytical Chemistry

Volumn 83, Issue 13, 2011, Pages 5153-5159

  Tjong, Vinalia ^a   Yu, Hua ^a,b   Hucknall, Angus ^a   Rangarajan, Srinath ^a,b   Chilkoti, Ashutosh ^a,b  

^a Duke University   (United States)

^b DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA CHAINS; DNA HYBRIDIZATION; DNA POLYMERASE; DNA PROBE; DNA STRANDS; DOSE-RESPONSE CURVES; ENZYMATIC POLYMERIZATION; EXTENDED PRODUCT; GLASS SURFACES; LABELING METHODS; LIMIT OF DETECTION; LINEAR DYNAMIC RANGES; MOLAR RATIO; OH GROUP; OLIGONUCLEOTIDE PRIMERS; ON CHIPS; ON-CHIP FLUORESCENCE; POLYMERIZATION CONDITIONS; SEQUENTIAL ADDITION; SIGNAL AMPLIFICATIONS; SINGLE-STRANDED DNA (SS-DNA); SURFACE-INITIATED;

FLUORESCENCE; FLUOROPHORES; OLIGONUCLEOTIDES; POLYDISPERSITY; POLYMERIZATION; POLYMERS; SIGNAL DETECTION;

DNA;

DNA; POLYMER; PRIMER DNA;

ARTICLE; CHEMISTRY; GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; SPECTROFLUOROMETRY; SURFACE PROPERTY;

BASE SEQUENCE; DNA; DNA PRIMERS; NUCLEIC ACID HYBRIDIZATION; POLYMERS; SPECTROMETRY, FLUORESCENCE; SURFACE PROPERTIES;

EID: 79960019439     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac200946t     Document Type: Article

References (42)

1. Duggan, D. J.; Bittner, M.; Chen, Y. D.; Meltzer, P.; Trent, J. M. Nat. Genet. 1999, 21, 10-14
2. Schulze, A.; Downward, J. Nat. Cell Biol. 2001, 3, E190-195
3. Barrett, J. C.; Kawasaki, E. S. Drug Discovery Today 2003, 8, 134-141
4. Stoughton, R. B. Annu. Rev. Biochem. 2005, 74, 53-82
5. Thomson, J. M.; Parker, J.; Perou, C. M.; Hammond, S. M. Nat. Methods 2004, 1, 1-7
6. Shingara, J.; Keiger, K.; Shelton, J.; Laosinchai-Wolf, W.; Powers, P.; Conrad, R.; Brown, D.; Labourier, E. RNA 2005, 11, 1461-1470
7. Lee, J. M.; Cho, H.; Jung, Y. Angew. Chem., Int. Ed. 2010, 49, 8662-8665
8. Andras, S. C.; Power, J. B.; Cocking, E. C.; Davey, M. R. Mol. Biotechnol. 2001, 19, 29-44
9. Park, H. G.; Song, J. Y.; Park, K. H.; Kim, M. H. Chem. Eng. Sci. 2006, 61, 954-965
10. Naef, F.; Magnasco, M. O. Phys. Rev. E 2003, 68, 0119061-0119064
11. Kricka, L. J. Clin. Biochem. 1993, 26, 325-331
12. Yang, H.; Wanner, I. B.; Roper, S. D.; Chaudhari, N. J. Histochem. Cytochem. 1999, 47, 431-446
13. Niemeyer, C. M.; Adler, M.; Wacker, R. Trends Biotechnol. 2005, 23, 208-216
14. Konry, T.; Hayman, R. B.; Walt, D. R. Anal. Chem. 2009, 81, 5777-5782
15. Schweitzer, B.; Wiltshire, S.; Lambert, J.; O'Malley, S.; Kukanskis, K.; Zhu, Z.; Kingsmore, S. F.; Lizardi, P. M.; Ward, D. C. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 10113-10119
16. Collins, M. L.; Irvine, B.; Tyner, D.; Fine, E.; Zayati, C.; Chang, C.; Horn, T.; Ahle, D.; Detmer, J.; Shen, L. P.; Kolberg, J.; Bushnell, S.; Urdea, M. S.; Ho, D. D. Nucleic Acids Res. 1997, 25, 2979-2984
17. Heise, C.; Bier, F. F. Top. Curr. Chem. 2005, 261, 1-25
18. Sassolas, A.; Leca-Bouvier, B. D.; Blum, L. J. Chem. Rev. 2008, 108, 109-139
19. Alemdaroglu, F. E.; Herrmann, A. Org. Biomol. Chem. 2007, 5, 1311-1320
20. Kato, K.; Goncalves, J. M.; Houts, G. E.; Bollum, F. J. J. Biol. Chem. 1967, 242, 2780-2789
21. Bollum, F. J. J. Biol. Chem. 1960, 235, 2399-2403
22. Sambrook, J.; Russel, D. W. In Molecular Cloning: A Laboratory Manual; Sambrook, J.; Russel, D. W., Eds.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 2001; Vol. 2, p 9.60.
23. Sambrook, J.; Russel, D. W. In Molecular Cloning: A Laboratory Manual; Sambrook, J.; Russel, D. W., Eds.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 2001; Vol. 2, p 8.54.
24. Gavrieli, Y.; Sherman, Y.; Ben-Sasson, S. A. J. Cell Biol. 1992, 119, 493-501
25. Deng, G.; Wu, R. Nucleic Acids Res. 1981, 9, 4173-4188
26. Michelson, A. M.; Orkin, S. H. J. Biol. Chem. 1982, 257, 14773-14782
27. Chang, L. M.; Bollum, F. J. CRC Crit. Rev. Biochem. 1986, 21, 27-52
28. Bollum, F. J. Terminal Deoxynucleotidyl Transferase. In The Enzymes; Boyer, P. D., Ed.; Academic Press: New York, 1974; Vol. 10, p 145.
29. Fowler, J. D.; Suo, Z. Chem. Rev. 2006, 106, 2092-2110
30. Igloi, G. L. BioTechniques 1996, 21, 1084-1092
31. Guerra, C. E. BioTechniques 2006, 41, 53-56
32. Kumar, A.; Tchen, P.; Roullet, F.; Cohen, J. Anal. Biochem. 1988, 169, 376-382
33. Flickinger, J. L.; Gebeyehu, G.; Buchman, G.; Haces, A.; Rashtchian, A. Nucleic Acids Res. 1992, 20, 2382
34. Schmitz, G. G.; Walter, T.; Seibl, R.; Kessler, C. Anal. Biochem. 1991, 192, 222-231
35. Krayevsky, A. A.; Victorova, L. S.; Arzumanov, A. A.; Jasko, M. V. Pharmacol. Therapeut. 2001, 85, 165-173
36. Yu, H.; Chao, J.; Patek, D.; Mujumbar, R.; Mujumdar, S.; Waggoner, A. S. Nucleic Acids Res. 1994, 22, 3226-3232
37. Chow, D. C.; Chilkoti, A. Langmuir 2007, 23, 11712-11717
38. Marras, S. A. E.; Kramer, F. R.; Tyagi, S. Nucleic Acids Res. 2002, 30, e122
39. He, L.; Musick, M. D.; Nicewarner, S. R.; Salinas, S. G.; Benkovic, S. J.; Natan, M. J.; Keating, C. D. J. Am. Chem. Soc. 2000, 122, 9071-9077
40. Zheng, W.; He, L. J. Am. Chem. Soc. 2009, 131, 3432-3433
41. Natsume, T.; Ishikawa, Y.; Dedachi, K.; Tsukamoto, T.; Kurita, N. Chem. Phys. Lett. 2007, 434, 133-138
42. McMillan, J.; Visitacion, M.; Curry, B.; Fulmer-Smentek, S.; Zhou, X.; Corson, J. An improved method for automatic extension of microarray scanner dynamic range. Technical Note (5989-5405EN); Agilent Technologies, Santa Clara, CA, 2006.