Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays

Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics

Volumn 68, Issue 1, 2003, Pages 4-

  Naef, Felix ^a   Magnasco, Marcelo O ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA;

BIOPHYSICS; BIOTINYLATION; CHEMISTRY; DNA MICROARRAY; HUMAN; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROCEDURES; STATISTICAL MODEL;

BASE SEQUENCE; BIOPHYSICAL PHENOMENA; BIOPHYSICS; BIOTINYLATION; HUMANS; MODELS, STATISTICAL; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA; RNA, MESSENGER;

BINDING ENERGY; DNA; DNA SEQUENCES; PROBABILITY; RNA;

OLIGONUCLEOTIDE ARRAYS;

OLIGOMERS;

EID: 85035214096     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevE.68.011906     Document Type: Article

References (19)

1. D.J. Lockhart and E.A. Winzeler, Nature (London) 405, 827 (2000).
2. M. Chee, Science 274, 610 (1996).
3. R.J. Lipshutz, Nat. Genet. 21, 20 (1999).
4. D.K. Gifford, Science 293, 2049 (2001).
5. N. Banerjee and M.Q. Zhang, Curr. Microbiol. 5, 313 (2002).
6. H. Dai, M. Meyer, S. Stepaniants, M. Ziman, and R. Stoughton, Nucleic Acids Res.30, E86 (2002).
7. F. Naef, Phys. Rev. E 65, 040902 (2002).
8. D. Hekstra, A.R. Taussig, M. Magnasco, and F. Naef, Nucleic Acids Res. 31(7) 1962 (2003).
9. A. Bonincontro, M. Matzeu, F. Mazzei, A. Minoprio, and F. Pedone, Biochim. Biophys. Acta 1171, 288 (1993).
10. G. Bonnet, S. Tyagi, A. Libchaber, and F.R. Kramer, Proc. Natl. Acad. Sci. U.S.A. 96, 6171 (1999).
11. M. Salerno, Phys. Rev. A 44, 5292 (1991).
12. N. Singh and Y. Singh, Phys. Rev. E 64, 042901 (2001).
13. J.A.D. Wattis, S.A. Harris, C.R. Grindon and C.A. Laughton, Phys. Rev. E 63, 061903 (2001).
14. F. Naef, C. Hacker, N. Patil, and M. Magnasco, Genome Biol 3, 18 (2002).
15. C. Li and W.H. Wong, Proc. Natl. Acad. Sci. U.S.A. 98, 31 (2001).
16. N. Sugimoto, Biochemistry 34, 11 211 (1995).
17. Available from http://www.affymetrix.com/analysis/download_center.affx
18. G. Vesnaver and K.J. Breslauer, Proc. Natl. Acad. Sci. U.S.A. 88, 3569 (1991).
19. N.L. Goddard, Phys. Rev. Lett. 85, 2400 (2000).