Microsphere-based rolling circle amplification microarray for the detection of DNA and proteins in a single assay

Analytical Chemistry

Volumn 81, Issue 14, 2009, Pages 5777-5782

  Konry, Tania ^a   Hayman, Ryan B ^a   Walt, David R ^a  

^a TUFTS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTES; CIRCULAR SEQUENCES; DETECTION LIMITS; DNA PROBE; EPIFLUORESCENCE MICROSCOPE; HAEMOPHILUS INFLUENZAE; HIGH-DENSITY; LIMIT OF DETECTION; MICROWELLS; NEW APPROACHES; NUCLEIC ACID DETECTION; OPTICAL FIBER BUNDLE; ORDERS OF MAGNITUDE; OUTER MEMBRANE PROTEIN; PROINFLAMMATORY; RECOMBINANT PROTEIN; ROLLING CIRCLE AMPLIFICATIONS; SANDWICH ASSAYS; SECONDARY ANTIBODIES; SIGNAL AMPLIFICATIONS; SIMULTANEOUS DETECTION; SYNTHETIC DNA; TARGET PROTEINS; TARGET SEQUENCES;

AMPLIFICATION; ASSAYS; DNA; GENES; LABELS; LOCKS (FASTENERS); MICROSPHERES; NUCLEIC ACIDS; OPTICAL FIBERS; PROBES; SENSORS; SIGNAL DETECTION; SIGNAL PROCESSING; TARGETS;

ANTIBODIES;

AVIDIN; BACTERIAL DNA; BIOTIN; FLUORESCENT DYE; GLASS FIBER; INTERLEUKIN 6; INTERLEUKIN 6 ANTIBODY; INTERLEUKIN 8; INTERLEUKIN 8 ANTIBODY; MICROSPHERE; OUTER MEMBRANE PROTEIN; SYNTHETIC DNA;

ANTIBODY DETECTION; ANTIBODY LABELING; ARTICLE; BACTERIAL STRAIN; BIOTINYLATION; CONTROLLED STUDY; DNA DETERMINATION; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROBE; DNA SEQUENCE; ENZYME IMMUNOASSAY; EPIFLUORESCENCE MICROSCOPE; GENE; GENE AMPLIFICATION; HAEMOPHILUS INFLUENZAE; IMMOBILIZATION; MOLECULAR SENSOR; NONHUMAN; PROTEIN DETERMINATION; PROTEIN MICROARRAY; PROTEIN PURIFICATION; ROLLING CIRCLE AMPLIFICATION MICROARRAY;

BIOLOGICAL MARKERS; DNA; HUMANS; MICROSPHERES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN ARRAY ANALYSIS; PROTEINS;

ANTIBODIES; FASTENERS; GENES; LABELS; MEASURING INSTRUMENTS; MICROSPHERES; NUCLEIC ACIDS; SENSORS;

EID: 67650759735     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac900694y     Document Type: Article

References (39)

1. LaFratta, C. N.; Walt, D. R. Chem. Rev. 2008, 108 (2), 614-637.
2. Needels, M. C.; Jones, D. G.; Tate, E. H.; Heinkel, G. L.; Kochersperger, L. M.; Dower, W. J. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 10700-10704.
3. Fulton, R. J.; McDada, R. L.; Smith, P. L.; Kienker, L. J. J. R. Clin. Chem. 1997, 43, 1749-1756.
4. Egner, B. J.; Rana, S.; Smith, H.; Bouloc, N.; Frey, J.; Brocklesby, W. S. Chem. Commun. 1997, 8, 735-736.
5. Czarnik, A. W. Curr. Opin. Chem. Biol. 1997, 1, 60-66.
6. Gorris, H.; Blicharz, T. M.; Walt, D. R. FEBS J. 2007, 274 (21), 5462-5470.
7. Rutmam, A.; Dowling, R.; Wills, P.; Feldman, C.; Cole, P. J.; Wilson, R. Antimicrob. Agents Chemother. 1998, 772-778.
8. Khair, O. A.; Devalia, J. L.; Abdelaziz, M. M.; Sapsford, R. J.; Davies, R. J. Eur. Respir. J. 1995, 8, 1451-1457.
9. Tong, H. H.; Chen, Y.; James, M.; Deusen, J.Van; Welling, D. B.; Demaria, T. F. Infect. Immun. 2001, 3678-3684.
10. Chung, K. F. Eur. Respir. J. 2001, 18 (34), 50-59.
11. Pauwels, R.; Verschraegen, G.; Van Der Straeten, M. Allergy 1980, 35 (8), 665-669.
12. Marini, M.; Vittori, E.; Hollemborg, J.; Mattoli, S. J. Allergy Clin. Immunol. 1992, 89, 1001-1009.
13. Hashimoto, M.; Hupert, M. L.; Murphy, M. C.; Soper, S. A.; Cheng, Y.-W.; Barany, F. Anal. Chem. 2005, 77, 3243-3255.
14. Favis, R.; Huang, J.; Gerry, N. P.; Culliford, A.; Paty, P.; Soussi, T.; Barany, F. Hum. Mutat. 2004, 24, 63-75.
15. Saiki, R. K.; Scharf, S.; Faloona, F.; Mullis, K. B.; Horn, G. T.; Erlich, H. A. Science 1985, 230, 1350-1354.
16. Sano, T. S. C.; Cantor, C. R. Science 1992, 258 (5079), 120-122.
17. Ruzicka, V.; Marz, W.; Russ, A.; Gross, W. Science 1993, 260, 698-699.
18. Zhou, H. R.; Fisher, J.; Papas, T. S. Nucleic Acids Res. 1993, 21, 6038-6039.
19. Sano, T.; Smith, C.; Cantor, C. R. Science 1993, 260, 698-699.
20. Sano, T.; Cantor, C. R. Biotechnology 1991, 9, 1378-1381.
21. Hendrickson, E. R.; Hatfield, T. M.; Joerger, R. D.; Majarian, W. R.; Ebersole, R. C. Nucleic Acids Res. 1995, 23, 522-529.
22. Schweitzer, B.; Wiltshire, S.; Lambert, J.; O'Malley, S.; Kukanskis, K.; Zhu, Z.; Kingsmore, S. F.; Lizardi, P. M.; Ward, D. C. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 10113-10119.
23. Jin Lee, H.; Warkb, A. W.; Corn, R. M. Analyst 2008, 1-9.
24. Demidov, V. V. Expert Rev. Mol. Diagn. 2002, 2 (6), 89-95.
25. Strömberg, M.; Göransson, J.; Gunnarsson, K.; Nilsson, M.; Svedlindh, P.; Strømme, M. Nano Lett. 2008, 8 (3), 816-821.
26. Nilsson, M.; Malmgren, H.; Samiotaki, M.; Kwiatkowski, M.; Chowdhary, B. P.; Landegren, U. Science 1994, 265, 2085-2088.
27. Landegren, U.; Dahl, F.; Nilsson, M.; Fredriksson, S.; Banér, J.; Gullberg, M.; Jarvius, J.; Gustafsdottir, S.; Söderberg, O.; Ericsson, O.; Stenberg, J.; Schallmeiner, E. Comp. Funct. Genomics 2003, 4, 525-530.
28. Fire, A.; Xu, S. Q. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 4641-4645.
29. Liu, D.; Daubendiek, S. L.; Zillman, M. A.; Ryan, K.; Kool, E. T. J. Am. Chem. Soc. 1996, 118, 1587-1594.
30. Blab, G. A.; Schmidt, T.; Nilsson, M. Anal. Chem. 2004, 76, 495-498.
31. Jarvius, J.; Melin, J.; Göransson, J.; Stenberg, J.; Fredriksson, S.; Gonzalez-Rey, C.; Bertilsson, S.; Nilsson, M. Nat. Methods 2006, 3, 725-727.
32. Li, J.; Zhong, W. Anal. Chem. 2007, 79, 9030-9038.
33. Nilsson, M.; Dahl, F.; Larsson, C.; Gullberg, M.; Stenberg, J. Trends Biotechnol. 2006, 24, 83-88.
34. Zhang, D.; Wu, J.; Ye, F.; Feng, T.; Lee, I.; Yin, B. Clin. Chim. Acta 2006, 363, 61-70.
35. Ladd, J.; Allen, T. D.; Piliarik, M.; Homola, J.; Jiang, S. Anal. Chem. 2008, 80, 4231-4236.
36. Harper, J. C.; Polsky, R.; Wheeler, D. R.; Dirk, S. M.; Brozik, S. M. Langmuir 2007, 23, 8285-8287.
37. Walt, D. R.; Agayn, V. I. TrAC, Trends Anal. Chem. 1994, 13, 425-430.
38. Blicharz, T. M.; Siqueira, W. L.; Helmerhorst, E. J.; Oppenheim, F. G.; Wexler, P. J.; Little, F. F.; Walt, D. R. Anal. Chem. 2009. available online.
39. Tan, W.; Sabet, L.; Li, Y.; Yub, T.; Klokkevold, P. R.; Wong, D. T.; Hoc, C. M. Biosens. Bioelectron. 2008, 24, 266-271.