Core from Myxococcus xanthus is a Copper-Dependent RNA polymerase sigma factor

PLoS Genetics

Volumn 7, Issue 6, 2011, Pages

  Gómez Santos, Nuria ^a   Pérez, Juana ^a   Sánchez Sutil, María Celestina ^a   Moraleda Muñoz, Aurelio ^a   Muñoz Dorado, José ^a  

^a UNIVERSITY OF GRANADA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATASE COPA; ADENOSINE TRIPHOSPHATASE COPB; BETA GALACTOSIDASE; COPPER; COPPER REGULATED ECF SIGMA FACTOR; CUPRIC OXIDE; CUPROUS OXIDE; MULTICOPPER OXIDASE CUOB; OXIDOREDUCTASE; SIGMA FACTOR; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; DNA;

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL CELL; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; COPA GENE; COPB GENE; COPPER HOMEOSTASIS; CORE GENE; COUB GENE; CYSTEINE RICH DOMAIN; GENE ACTIVATION; GENE EXPRESSION REGULATION; GENE INACTIVATION; HOMEOSTASIS; MYXOCOCCUS XANTHUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION REDUCTION STATE; POINT MUTATION; PROTEIN DOMAIN; REGULATOR GENE; UPREGULATION; WILD TYPE; BINDING SITE; ENZYMOLOGY; GENETICS; METABOLISM; MUTATION;

MYXOCOCCUS XANTHUS; PROKARYOTA;

BACTERIAL PROTEINS; BINDING SITES; COPPER; DNA; GENE EXPRESSION REGULATION, BACTERIAL; MUTATION; MYXOCOCCUS XANTHUS; SIGMA FACTOR;

EID: 79959851204     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002106     Document Type: Article

References (41)

1. Whitworth DE, (2008) Myxobacteria. Multicellularity and differentiation Washington DC ASM Press.
2. Waldron KJ, Robinson NJ, (2009) How do bacterial cells ensure that metalloproteins get the correct metal? Nat Rev Microbiol 6: 25-35.
3. Tisato F, Marzano C, Porchia M, Pellei M, Santini C, (2010) Copper in diseases and treatments, and copper-based anticancer strategies. Med Res Rev 30: 708-49.
4. Osman D, Cavet JS, (2008) Copper homeostasis in bacteria. Adv Appl Microbiol 65: 217-247.
5. Solioz M, Abicht HK, Mermod M, Mancini S, (2010) Response of Gram-positive bacteria to copper stress. J Biol Inorg Chem 15: 3-14.
6. Moraleda-Muñoz A, Pérez J, Fontes M, Murillo FJ, Muñoz-Dorado J, (2005) Copper induction of carotenoid synthesis in the bacterium Myxococcus xanthus. Mol Microbiol 56: 1159-1168.
7. Sánchez-Sutil MC, Gómez-Santos N, Moraleda-Muñoz A, Martins LO, Pérez J, et al. (2007) Differential expression of the three multicopper oxidases from Myxococcus xanthus. J Bacteriol 189: 4887-4898.
8. Moraleda-Muñoz A, Pérez J, Extremera-León AL, Muñoz-Dorado J, (2010) Differential regulation of six heavy metal efflux systems in the response of Myxococcus xanthus to copper. Appl Environ Microbiol 76: 6069-6076.
9. Moraleda-Muñoz A, Pérez J, Extremera-León AL, Muñoz-Dorado J, (2010) Expression and physiological role of three Myxococcus xanthus copper-dependent P1B-type ATPases during bacterial growth and development. Appl Environ Microbiol 76: 6077-6084.
10. Marles-Wright J, Lewis RJ, (2007) Stress responses of bacteria. Curr Opin Struct Biol 17: 755-760.
11. Helmann JD, (2002) The extracytoplasmic function (ECF) sigma factors. Adv Microb Physiol 46: 47-110.
12. Campbell EA, Muzzin O, Chlenov M, Sun JL, Olson CA, et al. (2002) Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 9: 527-539.
13. Staroń A, Sofia HJ, Dietrich S, Ulrich LE, Liesegang H, et al. (2009) The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family. Mol Microbiol 74: 557-581.
14. Brooks BE, Buchanan SK, (2008) Signaling mechanisms for activation of extracytoplasmic function (ECF) sigma factors. Biochim Biophys Acta 1778: 1930-1945.
15. Riaivio TL, Silhavy TJ, (2001) Periplasmic stress and ECF sigma factors. Annu Rev Microbiol 55: 591-624.
16. Hughes KT, Mathee K, (1998) The anti-sigma factors. Annu Rev Microbiol 52: 231-286.
17. Rodrigue S, Brodeur J, Jacques PE, Gervais AL, Brzezinski R, et al. (2007) Identification of mycobacterial sigma factor binding sites by chromatin immunoprecipitation assays. J Bacteriol 189: 1505-1513.
18. Martínez-Cañamero M, Muñoz-Dorado J, Farez-Vidal E, Inouye M, Inouye S, (1993) Oar, a 115-kilodalton membrane protein required for development of Myxococcus xanthus. J Bacteriol 175: 4756-4763.
19. Xiao Z, Donnelly PS, Zimmermann M, Wedd AG, (2008) Transfer of copper between bis(thiosemicarbazone) ligands and intracellular copper-binding proteins. Insights into mechanisms of copper uptake and hypoxia selectivity. Inorg Chem 47: 4338-4347.
20. Xiao Z, Brose J, Schimo S, Ackland SM, La Fontaine S, et al. (2011) Unification of the copper(I) binding affinities of the metallo-chaperones Atx1, Atox1 and related proteins: detection probes and affinity standards. J Biol Chem 286: 11047-11055.
21. Alvarez HM, Xue Y, Robinson CD, Canalizo-Hernández MA, Marvin RG, et al. (2010) Tetrathiomolybdate inhibits copper trafficking proteins through metal cluster formation. Science 327: 331-334.
22. Davis AV, O'Halloran TV, (2008) A place for thioether chemistry in cellular copper ion recognition and trafficking. Nat Chem Biol 4: 148-151.
23. Paulsen CE, Carroll KS, (2010) Orchestrating redox signaling networks through regulatory cysteine switches. ACS Chem Biol 5: 47-62.
24. Changela A, Chen K, Xue Y, Holschen J, Outten CE, et al. (2003) Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR. Science 301: 1383-1387.
25. Penella MA, Giedroc DP, (2005) Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators. Biometal 18: 413-428.
26. Giedroc DP, Arunkumar AI, (2007) Metal sensor proteins: nature's metalloregulated allosteric switches. Dalton Trans 29: 3107-3120.
27. Osman D, Cavet JS, (2010) Bacterial metal sensing proteins exemplified by ArsR-SmtB family repressors. Nat Prod Rep 27: 668-680.
28. Siluvai GS, Mayfield M, Nilges MJ, DeBeer George S, Blackburn NJ, (2010) Anatomy of a red copper center: spectroscopic identification and reactivity of the copper centers of Bacillus subtilis Sco and its Cys-to-Ala variants. J Am Chem Soc 132: 5215-5226.
29. Siluvai GS, Nakano M, Mayfield M, Blackburn NJ, (2011) The essential role of the Cu(II) state of Sco in the maturation of the CuA center of cytochrome oxidase: evidence from H135Met and H135SeM variants of the Bacillus subtilis Sco. J Biol Inorg Chem 16: 285-297.
30. Cooper CE, Patel RP, Brookes PS, Darley-Usmar VM, (2002) Nanotransducers in cellular redox signaling: modification of thiols by reactive oxygen and nitrogen species. Trends Biochem Sci 27: 489-492.
31. Campbell EA, Greenwell R, Anthony JR, Wang S, Lim L, et al. (2007) A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol Cell 27: 793-805.
32. Waldron KJ, Rutherford JC, Ford D, Robinson NJ, (2009) Metalloproteins and metal sensing. Nature 460: 823-830.
33. Sambrook J, Russell DW, (2001) Molecular cloning: a laboratory manual Cold Spring Harbor NY Cold Spring Harbor Laboratory Press.
34. Julien B, Kaiser AD, Garza A, (2000) Spatial control of cell differentiation in Myxococcus xanthus. Proc Natl Acad Sci U S A 97: 9098-9103.
35. Cho K, Zusman DR, (1999) AsgD, a new two-component regulator required for A-signalling and nutrient sensing during early development of Myxococcus xanthus. Mol Microbiol 34: 268-281.
36. Finn RD, Mistry J, Tate J, Coggill JP, Heger A, et al. (2010) The Pfam protein families database. Nucl Acids Res 38: 211-222.
37. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
38. Pérez J, Castañeda-García A, Jenke-Kodama H, Müller R, Muñoz-Dorado J, (2008) Eukaryotic-like protein kinases in the prokaryotes and the myxobacterial kinome. Proc Natl Acad Sci U S A 105: 15950-15955.
39. Elías-Arnanz M, Fontes M, Pabmanabhan S, (2008) Carotenogenesis in Myxococcus xanthus: a complex regulatory network. In: Whitworth DE, editors. Myxobacteria. Multicellularity and differentiation Washington DC ASM Press pp. 211-225.
40. Münch R, Hiller K, Grote A, Scheer M, Klein J, et al. (2005) Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics 21: 4187-4189.
41. Crooks GE, Hon G, Chandonia JM, Brenner SE, (2004) WebLogo: A sequence logo generator. Genome Res 14: 1188-1190.