메뉴 건너뛰기




Volumn 189, Issue 5, 2007, Pages 1505-1513

Identification of mycobacterial σ factor binding sites by chromatin immunoprecipitation assays

Author keywords

[No Author keywords available]

Indexed keywords

ANHYDROTETRACYCLINE; DNA FRAGMENT; HOLOENZYME; SIGMA A FACTOR; SIGMA B FACTOR; SIGMA FACTOR; SPACER DNA; UNCLASSIFIED DRUG;

EID: 33947415761     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01371-06     Document Type: Article
Times cited : (72)

References (43)
  • 1
    • 1842506160 scopus 로고    scopus 로고
    • Regulation at complex bacterial promoters: How bacteria use different promoter organizations to produce different regulatory outcomes
    • Barnard, A., A. Wolfe, and S. Busby. 2004. Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes. Curr. Opin. Microbiol. 7:102-108.
    • (2004) Curr. Opin. Microbiol , vol.7 , pp. 102-108
    • Barnard, A.1    Wolfe, A.2    Busby, S.3
  • 2
    • 0036034863 scopus 로고    scopus 로고
    • Novel Mycobacterium tuberculosis anti-sigma factor antagonists control sigmaF activity by distinct mechanisms
    • Beaucher, J., S. Rodrigue, P. E. Jacques, I. Smith, R. Brzezinski, and L. Gaudreau. 2002. Novel Mycobacterium tuberculosis anti-sigma factor antagonists control sigmaF activity by distinct mechanisms. Mol. Microbiol. 45: 1527-1540.
    • (2002) Mol. Microbiol , vol.45 , pp. 1527-1540
    • Beaucher, J.1    Rodrigue, S.2    Jacques, P.E.3    Smith, I.4    Brzezinski, R.5    Gaudreau, L.6
  • 4
    • 1242316281 scopus 로고    scopus 로고
    • ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
    • Buck, M. J., and J. D. Lieb. 2004. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 83:349-360.
    • (2004) Genomics , vol.83 , pp. 349-360
    • Buck, M.J.1    Lieb, J.D.2
  • 5
    • 13844312836 scopus 로고    scopus 로고
    • The Mycobacterium tuberculosis SigD sigma factor controls the expression of ribosome-associated gene products in stationary phase and is required for full virulence
    • Calamita, H., C. Ko, S. Tyagi, T. Yoshimatsu, N. E. Morrison, and W. R. Bishai. 2005. The Mycobacterium tuberculosis SigD sigma factor controls the expression of ribosome-associated gene products in stationary phase and is required for full virulence. Cell. Microbiol. 7:233-244.
    • (2005) Cell. Microbiol , vol.7 , pp. 233-244
    • Calamita, H.1    Ko, C.2    Tyagi, S.3    Yoshimatsu, T.4    Morrison, N.E.5    Bishai, W.R.6
  • 6
    • 19944421087 scopus 로고    scopus 로고
    • Reduced expression of antigenic proteins MPB70 and MPB83 in Mycobacterium bovis BCG strains due to a start codon mutation in sigK
    • Charlet, D., S. Mostowy, D. Alexander, L. Sit, H. G. Wiker, and M. A. Behr. 2005. Reduced expression of antigenic proteins MPB70 and MPB83 in Mycobacterium bovis BCG strains due to a start codon mutation in sigK. Mol. Microbiol. 56:1302-1313.
    • (2005) Mol. Microbiol , vol.56 , pp. 1302-1313
    • Charlet, D.1    Mostowy, S.2    Alexander, D.3    Sit, L.4    Wiker, H.G.5    Behr, M.A.6
  • 7
    • 0242608580 scopus 로고    scopus 로고
    • Molecular genetics of Mycobacterium tuberculosis pathogenesis
    • Clark-Curtiss, J. E., and S. E. Haydel. 2003. Molecular genetics of Mycobacterium tuberculosis pathogenesis. Annu. Rev. Microbiol. 57:517-549.
    • (2003) Annu. Rev. Microbiol , vol.57 , pp. 517-549
    • Clark-Curtiss, J.E.1    Haydel, S.E.2
  • 8
    • 0032508046 scopus 로고    scopus 로고
    • Cole, S. T., R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S. V. Gordon, K. Eiglmeier, S. Gas, C. E. Barry III, F. Tekaia, K. Badcock, D. Basham, D. Brown, T. Chillingworth, R. Connor, R. Davies, K. Devlin, T. Feltwell, S. Gentles, N. Hamlin, S. Holroyd, T. Hornsby, K. Jagels, A. Krogh, J. McLean, S. Moule, L. Murphy, K. Oliver, J. Osborne, M. A. Quail, M. A. Rajandream, J. Rogers, S. Rutter, K. Seeger, J. Skelton, R. Squares, S. Squares, J. E. Sulston, K. Taylor, S. Whitehead, and B. G. Barrell. 1998. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537-544.
    • Cole, S. T., R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S. V. Gordon, K. Eiglmeier, S. Gas, C. E. Barry III, F. Tekaia, K. Badcock, D. Basham, D. Brown, T. Chillingworth, R. Connor, R. Davies, K. Devlin, T. Feltwell, S. Gentles, N. Hamlin, S. Holroyd, T. Hornsby, K. Jagels, A. Krogh, J. McLean, S. Moule, L. Murphy, K. Oliver, J. Osborne, M. A. Quail, M. A. Rajandream, J. Rogers, S. Rutter, K. Seeger, J. Skelton, R. Squares, S. Squares, J. E. Sulston, K. Taylor, S. Whitehead, and B. G. Barrell. 1998. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537-544.
  • 13
    • 10744220645 scopus 로고    scopus 로고
    • Attenuation of late-stage disease in mice infected by the Mycobacterium tuberculosis mutant lacking the SigF alternate sigma factor and identification of SigF-dependent genes by microarray analysis
    • Geiman, D. E., D. Kaushal, C. Ko, S. Tyagi, Y. C. Manabe, B. G. Schroeder, R. D. Fleischmann, N. E. Morrison, P. J. Converse, P. Chen, and W. R. Bishai. 2004. Attenuation of late-stage disease in mice infected by the Mycobacterium tuberculosis mutant lacking the SigF alternate sigma factor and identification of SigF-dependent genes by microarray analysis. Infect. Immun. 72:1733-1745.
    • (2004) Infect. Immun , vol.72 , pp. 1733-1745
    • Geiman, D.E.1    Kaushal, D.2    Ko, C.3    Tyagi, S.4    Manabe, Y.C.5    Schroeder, B.G.6    Fleischmann, R.D.7    Morrison, N.E.8    Converse, P.J.9    Chen, P.10    Bishai, W.R.11
  • 14
    • 33847366112 scopus 로고    scopus 로고
    • Approaches to identify novel non-messenger RNAs in bacteria and to investigate their biological functions: Functional analysis of identified non-mRNAs
    • R. K. Hartmann, A. Bindereif, A. Schön, and E. Westhof ed, Wiley-VCH Verlag GmbH & Co, Weinheim, Germany
    • Gerhart, E., H. Wagner, and J. Vogel. 2005. Approaches to identify novel non-messenger RNAs in bacteria and to investigate their biological functions: functional analysis of identified non-mRNAs, p. 614-642. In R. K. Hartmann, A. Bindereif, A. Schön, and E. Westhof (ed.), Handbook of RNA biochemistry, vol. 2. Wiley-VCH Verlag GmbH & Co, Weinheim, Germany.
    • (2005) Handbook of RNA biochemistry , vol.2 , pp. 614-642
    • Gerhart, E.1    Wagner, H.2    Vogel, J.3
  • 15
    • 0029917091 scopus 로고    scopus 로고
    • The rRNA operons of Mycobacterium smegmatis and Mycobacterium tuberculosis: Comparison of promoter elements and of neighbouring upstream genes
    • Gonzalez-y-Merchand, J. A., M. J. Colston, and R. A. Cox. 1996. The rRNA operons of Mycobacterium smegmatis and Mycobacterium tuberculosis: comparison of promoter elements and of neighbouring upstream genes. Microbiology 142:667-674.
    • (1996) Microbiology , vol.142 , pp. 667-674
    • Gonzalez-y-Merchand, J.A.1    Colston, M.J.2    Cox, R.A.3
  • 16
    • 26444518218 scopus 로고    scopus 로고
    • The Mycobacterium tuberculosis extracytoplasmic-function sigma factor SigL regulates polyketide synthases and secreted or membrane proteins and is required for virulence
    • Hahn, M. Y., S. Raman, M. Anaya, and R. N. Husson. 2005. The Mycobacterium tuberculosis extracytoplasmic-function sigma factor SigL regulates polyketide synthases and secreted or membrane proteins and is required for virulence. J. Bacteriol. 187:7062-7071.
    • (2005) J. Bacteriol , vol.187 , pp. 7062-7071
    • Hahn, M.Y.1    Raman, S.2    Anaya, M.3    Husson, R.N.4
  • 17
    • 24344447800 scopus 로고    scopus 로고
    • Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays
    • Herring, C. D., M. Raffaelle, T. E. Allen, E. I. Kanin, R. Landick, A. Z. Ansari, and B. O. Palsson. 2005. Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. J. Bacteriol. 187:6166-6174.
    • (2005) J. Bacteriol , vol.187 , pp. 6166-6174
    • Herring, C.D.1    Raffaelle, M.2    Allen, T.E.3    Kanin, E.I.4    Landick, R.5    Ansari, A.Z.6    Palsson, B.O.7
  • 18
    • 0032954835 scopus 로고    scopus 로고
    • Transcription of two sigma 70 homologue genes, sigA and sigB, in stationary-phase Mycobacterium tuberculosis
    • Hu, Y., and A. R. Coates. 1999. Transcription of two sigma 70 homologue genes, sigA and sigB, in stationary-phase Mycobacterium tuberculosis. J. Bacteriol. 181:469-476.
    • (1999) J. Bacteriol , vol.181 , pp. 469-476
    • Hu, Y.1    Coates, A.R.2
  • 19
    • 33645059431 scopus 로고    scopus 로고
    • A recombinant Mycobacterium tuberculosis in vitro transcription system
    • Jacques, J. F., S. Rodrigue, R. Brzezinski, and L. Gaudreau. 2006. A recombinant Mycobacterium tuberculosis in vitro transcription system. FEMS Microbiol. Lett. 255:140-147.
    • (2006) FEMS Microbiol. Lett , vol.255 , pp. 140-147
    • Jacques, J.F.1    Rodrigue, S.2    Brzezinski, R.3    Gaudreau, L.4
  • 22
    • 0033388858 scopus 로고    scopus 로고
    • In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment
    • Kuo, M. H., and C. D. Allis. 1999. In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment. Methods 19:425-433.
    • (1999) Methods , vol.19 , pp. 425-433
    • Kuo, M.H.1    Allis, C.D.2
  • 23
    • 0032955397 scopus 로고    scopus 로고
    • Differential expression of 10 sigma factor genes in Mycobacterium tuberculosis
    • Manganelli, R., E. Dubnau, S. Tyagi, F. R. Kramer, and I. Smith. 1999. Differential expression of 10 sigma factor genes in Mycobacterium tuberculosis. Mol. Microbiol. 31:715-724.
    • (1999) Mol. Microbiol , vol.31 , pp. 715-724
    • Manganelli, R.1    Dubnau, E.2    Tyagi, S.3    Kramer, F.R.4    Smith, I.5
  • 26
    • 0036065206 scopus 로고    scopus 로고
    • Role of the extracytoplasmic-function sigma factor sigma(H) in Mycobacterium tuberculosis global gene expression
    • Manganelli, R., M. I. Voskuil, G. K. Schoolnik, E. Dubnau, M. Gomez, and I. Smith. 2002. Role of the extracytoplasmic-function sigma factor sigma(H) in Mycobacterium tuberculosis global gene expression. Mol. Microbiol. 45: 365-374.
    • (2002) Mol. Microbiol , vol.45 , pp. 365-374
    • Manganelli, R.1    Voskuil, M.I.2    Schoolnik, G.K.3    Dubnau, E.4    Gomez, M.5    Smith, I.6
  • 27
    • 0034903883 scopus 로고    scopus 로고
    • The Mycobacterium tuberculosis ECF sigma factor sigmaE: Role in global gene expression and survival in macrophages
    • Manganelli, R., M. I. Voskuil, G. K. Schoolnik, and I. Smith. 2001. The Mycobacterium tuberculosis ECF sigma factor sigmaE: role in global gene expression and survival in macrophages. Mol. Microbiol. 41:423-437.
    • (2001) Mol. Microbiol , vol.41 , pp. 423-437
    • Manganelli, R.1    Voskuil, M.I.2    Schoolnik, G.K.3    Smith, I.4
  • 28
    • 0028981340 scopus 로고
    • Differential transcription of the MPB70 genes in two major groups of Mycobacterium bovis BCG substrains
    • Matsuo, T., S. Matsumoto, N. Ohara, H. Kitaura, A. Mizuno, and T. Yamada. 1995. Differential transcription of the MPB70 genes in two major groups of Mycobacterium bovis BCG substrains. Microbiology 141:1601-1607.
    • (1995) Microbiology , vol.141 , pp. 1601-1607
    • Matsuo, T.1    Matsumoto, S.2    Ohara, N.3    Kitaura, H.4    Mizuno, A.5    Yamada, T.6
  • 29
    • 0346340083 scopus 로고    scopus 로고
    • The in vitro evolution of BCG vaccines
    • Mostowy, S., A. G. Tsolaki, P. M. Small, and M. A. Behr. 2003. The in vitro evolution of BCG vaccines. Vaccine 21:4270-4274.
    • (2003) Vaccine , vol.21 , pp. 4270-4274
    • Mostowy, S.1    Tsolaki, A.G.2    Small, P.M.3    Behr, M.A.4
  • 31
    • 0034161329 scopus 로고    scopus 로고
    • Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation
    • Orlando, V. 2000. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem. Sci. 25:99-104.
    • (2000) Trends Biochem. Sci , vol.25 , pp. 99-104
    • Orlando, V.1
  • 32
    • 4544346067 scopus 로고    scopus 로고
    • Transcription regulation by the Mycobacterium tuberculosis alternative sigma factor SigD and its role in virulence
    • Raman, S., R. Hazra, C. C. Dascher, and R. N. Husson. 2004. Transcription regulation by the Mycobacterium tuberculosis alternative sigma factor SigD and its role in virulence. J. Bacteriol. 186:6605-6616.
    • (2004) J. Bacteriol , vol.186 , pp. 6605-6616
    • Raman, S.1    Hazra, R.2    Dascher, C.C.3    Husson, R.N.4
  • 33
    • 0034805644 scopus 로고    scopus 로고
    • The alternative sigma factor SigH regulates major components of oxidative and heat stress responses in Mycobacterium tuberculosis
    • Raman, S., T. Song, X. Puyang, S. Bardarov, W. R. Jacobs, Jr., and R. N. Husson. 2001. The alternative sigma factor SigH regulates major components of oxidative and heat stress responses in Mycobacterium tuberculosis. J. Bacteriol. 183:6119-6125.
    • (2001) J. Bacteriol , vol.183 , pp. 6119-6125
    • Raman, S.1    Song, T.2    Puyang, X.3    Bardarov, S.4    Jacobs Jr., W.R.5    Husson, R.N.6
  • 36
    • 33750695632 scopus 로고    scopus 로고
    • Mutations in Mycobacterium tuberculosis Rv0444c, the gene encoding anti-SigK, explain high level expression of MPB70 and MPB83 in Mycobacterium bovis
    • Said-Salim, B., S. Mostowy, A. S. Kristof, and M. A. Behr. 2006. Mutations in Mycobacterium tuberculosis Rv0444c, the gene encoding anti-SigK, explain high level expression of MPB70 and MPB83 in Mycobacterium bovis. Mol. Microbiol. 62:1251-1263.
    • (2006) Mol. Microbiol , vol.62 , pp. 1251-1263
    • Said-Salim, B.1    Mostowy, S.2    Kristof, A.S.3    Behr, M.A.4
  • 38
    • 0038784717 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence
    • Smith, I. 2003. Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence. Clin. Microbiol. Rev. 16:463-496.
    • (2003) Clin. Microbiol. Rev , vol.16 , pp. 463-496
    • Smith, I.1
  • 39
    • 0025081151 scopus 로고    scopus 로고
    • Snapper, S. B., R. E. Melton, S. Mustafa, T. Kieser, and W. R. Jacobs, Jr. 1990. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol. Microbiol. 4:1911-1919.
    • Snapper, S. B., R. E. Melton, S. Mustafa, T. Kieser, and W. R. Jacobs, Jr. 1990. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol. Microbiol. 4:1911-1919.
  • 40
    • 1942455731 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis ECF sigma factor sigC is required for lethality in mice and for the conditional expression of a defined gene set
    • Sun, R., P. J. Converse, C. Ko, S. Tyagi, N. E. Morrison, and W. R. Bishai. 2004. Mycobacterium tuberculosis ECF sigma factor sigC is required for lethality in mice and for the conditional expression of a defined gene set. Mol. Microbiol. 52:25-38.
    • (2004) Mol. Microbiol , vol.52 , pp. 25-38
    • Sun, R.1    Converse, P.J.2    Ko, C.3    Tyagi, S.4    Morrison, N.E.5    Bishai, W.R.6
  • 41
    • 1842585499 scopus 로고    scopus 로고
    • The temporal expression profile of Mycobacterium tuberculosis infection in mice
    • Talaat, A. M., R. Lyons, S. T. Howard, and S. A. Johnston. 2004. The temporal expression profile of Mycobacterium tuberculosis infection in mice. Proc. Natl. Acad. Sci. USA 101:4602-4607.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 4602-4607
    • Talaat, A.M.1    Lyons, R.2    Howard, S.T.3    Johnston, S.A.4
  • 42
    • 0036464509 scopus 로고    scopus 로고
    • Conserved economics of transcription termination in eubacteria
    • Unniraman, S., R. Prakash, and V. Nagaraja. 2002. Conserved economics of transcription termination in eubacteria. Nucleic Acids Res. 30:675-684.
    • (2002) Nucleic Acids Res , vol.30 , pp. 675-684
    • Unniraman, S.1    Prakash, R.2    Nagaraja, V.3
  • 43
    • 0027986926 scopus 로고
    • Functional analysis of transcription of the Mycobacterium tuberculosis 16S rDNA-encoding gene
    • Verma, A., A. K. Kinger, and J. S. Tyagi. 1994. Functional analysis of transcription of the Mycobacterium tuberculosis 16S rDNA-encoding gene. Gene 148:113-118.
    • (1994) Gene , vol.148 , pp. 113-118
    • Verma, A.1    Kinger, A.K.2    Tyagi, J.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.