-
1
-
-
0003818541
-
Structure and Mechanism in Protein Science
-
New York, W. H. Freeman & Co
-
Fersht A, (1999) Structure and Mechanism in Protein Science. New York W. H. Freeman & Co.
-
(1999)
-
-
Fersht, A.1
-
2
-
-
0015859467
-
Principles that govern folding of protein chains
-
Anfinsen CB, (1973) Principles that govern folding of protein chains. Science 181: 223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
5
-
-
0037154980
-
Protein folding and unfolding at atomic resolution
-
Fersht A, Daggett V, (2002) Protein folding and unfolding at atomic resolution. Cell 108: 573-582.
-
(2002)
Cell
, vol.108
, pp. 573-582
-
-
Fersht, A.1
Daggett, V.2
-
6
-
-
18744371588
-
Molecular dynamics and protein function
-
Karplus M, Kuriyan J, (2005) Molecular dynamics and protein function. P Natl Acad Sci USA 102: 6679-6685.
-
(2005)
P Natl Acad Sci USA
, vol.102
, pp. 6679-6685
-
-
Karplus, M.1
Kuriyan, J.2
-
7
-
-
50649095790
-
Macromolecular modeling with rosetta
-
Das R, Baker D, (2008) Macromolecular modeling with rosetta. Annu Rev Biochem 77: 363-382.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 363-382
-
-
Das, R.1
Baker, D.2
-
8
-
-
0035957514
-
Evolutionary conservation of the folding nucleus
-
Mirny L, Shakhnovich E, (2001) Evolutionary conservation of the folding nucleus. J of Mol Bio 308: 123-129.
-
(2001)
J of Mol Bio
, vol.308
, pp. 123-129
-
-
Mirny, L.1
Shakhnovich, E.2
-
10
-
-
17044393884
-
Coarse-grained models for proteins
-
Tozzini V, (2005) Coarse-grained models for proteins. Curr Opin Struc Biol 15: 144-150.
-
(2005)
Curr Opin Struc Biol
, vol.15
, pp. 144-150
-
-
Tozzini, V.1
-
11
-
-
0000355428
-
Respective roles of short-range and long-range interactions in protein folding
-
Go N, Taketomi H, (1978) Respective roles of short-range and long-range interactions in protein folding. P Natl Acad Sci USA 75: 559-563.
-
(1978)
P Natl Acad Sci USA
, vol.75
, pp. 559-563
-
-
Go, N.1
Taketomi, H.2
-
12
-
-
0023449962
-
Spin-glasses and the statistical-mechanics of protein folding
-
Bryngelson JD, Wolynes PG, (1987) Spin-glasses and the statistical-mechanics of protein folding. P Natl Acad Sci USA 84: 7524-7528.
-
(1987)
P Natl Acad Sci USA
, vol.84
, pp. 7524-7528
-
-
Bryngelson, J.D.1
Wolynes, P.G.2
-
13
-
-
0346304858
-
Designing refoldable model molecules
-
Coluzza I, Muller H, Frenkel D, (2003) Designing refoldable model molecules. Phys Rev E 68: 046703.
-
(2003)
Phys Rev E
, vol.68
, pp. 046703
-
-
Coluzza, I.1
Muller, H.2
Frenkel, D.3
-
14
-
-
33846829658
-
Monte carlo study of substrate-induced folding and refolding of lattice proteins
-
Coluzza I, Frenkel D, (2007) Monte carlo study of substrate-induced folding and refolding of lattice proteins. Biophys J 92: 1150-1156.
-
(2007)
Biophys J
, vol.92
, pp. 1150-1156
-
-
Coluzza, I.1
Frenkel, D.2
-
15
-
-
41349089029
-
Designing specificity of protein-substrate interactions
-
Coluzza I, Frenkel D, (2004) Designing specificity of protein-substrate interactions. Phys Rev E 70: 051917.
-
(2004)
Phys Rev E
, vol.70
, pp. 051917
-
-
Coluzza, I.1
Frenkel, D.2
-
16
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Rothlisberger D, Khersonsky O, Wollacott AM, Jiang L, Dechancie J, et al. (2008) Kemp elimination catalysts by computational enzyme design. Nature 453: 190-U4.
-
(2008)
Nature
, vol.453
, pp. 4-190
-
-
Rothlisberger, D.1
Khersonsky, O.2
Wollacott, A.M.3
Jiang, L.4
Dechancie, J.5
-
17
-
-
0034691565
-
Optimal shapes of compact strings
-
Maritan A, Micheletti C, Trovato A, Banavar JR, (2000) Optimal shapes of compact strings. Nature 406: 287-290.
-
(2000)
Nature
, vol.406
, pp. 287-290
-
-
Maritan, A.1
Micheletti, C.2
Trovato, A.3
Banavar, J.R.4
-
18
-
-
2542617639
-
Geometry and symmetry presculpt the free-energy landscape of proteins
-
Hoang T, Trovato A, Seno F, Banavar J, Maritan A, (2004) Geometry and symmetry presculpt the free-energy landscape of proteins. P Natl Acad Sci USA 101: 7960-7964.
-
(2004)
P Natl Acad Sci USA
, vol.101
, pp. 7960-7964
-
-
Hoang, T.1
Trovato, A.2
Seno, F.3
Banavar, J.4
Maritan, A.5
-
19
-
-
33646868070
-
Helical structures from an isotropic homopolymer model
-
Magee JE, Victor V, Lue L, (2006) Helical structures from an isotropic homopolymer model. Phys Rev Lett 96: 2078028.
-
(2006)
Phys Rev Lett
, vol.96
, pp. 2078028
-
-
Magee, J.E.1
Victor, V.2
Lue, L.3
-
20
-
-
33646466620
-
Common attributes of native-state structures of proteins, disordered proteins, and amyloid
-
Hoang T, Marsella L, Trovato A, Seno F, Banavar J, et al. (2006) Common attributes of native-state structures of proteins, disordered proteins, and amyloid. P Natl Acad Sci USA 103: 6883-6888.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 6883-6888
-
-
Hoang, T.1
Marsella, L.2
Trovato, A.3
Seno, F.4
Banavar, J.5
-
21
-
-
66349114059
-
First-principles design of nanomachines
-
Banavar JR, Cieplak M, Hoanga TX, Maritan A, (2011) First-principles design of nanomachines. P Natl Acad Sci USA 106: 6900-6903.
-
(2011)
P Natl Acad Sci USA
, vol.106
, pp. 6900-6903
-
-
Banavar, J.R.1
Cieplak, M.2
Hoanga, T.X.3
Maritan, A.4
-
22
-
-
0033954256
-
Announcing the worldwide protein data bank
-
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat T, et al. (2000) Announcing the worldwide protein data bank. Nuc Acid Res 28: 235-242.
-
(2000)
Nuc Acid Res
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
-
23
-
-
23544481384
-
Proteins
-
W.H.Freeman & Co Ltd 2nd Revised edition
-
Creighton, (1992) Proteins. W.H.Freeman & Co Ltd 2nd Revised edition.
-
(1992)
-
-
Creighton1
-
24
-
-
0033005899
-
Pair potentials for protein folding: Choice of reference states and sensitivity of predicted native states to variations in the interaction schemes
-
Betancourt M, Thirumalai D, (1999) Pair potentials for protein folding: Choice of reference states and sensitivity of predicted native states to variations in the interaction schemes. Protein Science 8: 361-369.
-
(1999)
Protein Science
, vol.8
, pp. 361-369
-
-
Betancourt, M.1
Thirumalai, D.2
-
25
-
-
0034610275
-
Three-helix-bundle protein in a ramachandran model
-
Irbäck A, Sjunnesson F, Wallin S, (2000) Three-helix-bundle protein in a ramachandran model. P Natl Acad Sci USA 97: 13614-13618.
-
(2000)
P Natl Acad Sci USA
, vol.97
, pp. 13614-13618
-
-
Irbäck, A.1
Sjunnesson, F.2
Wallin, S.3
-
26
-
-
0003938370
-
In Predictions of Protein Structure and the Principles of Protein Conformation
-
Springer
-
Dolittle R, (1989) In Predictions of Protein Structure and the Principles of Protein Conformation. Springer pp. 599-623.
-
(1989)
, pp. 599-623
-
-
Dolittle, R.1
-
27
-
-
0027234766
-
Engineering of stable and fast-folding sequences of model proteins
-
Shakhnovich E, Gutin A, (1993) Engineering of stable and fast-folding sequences of model proteins. P Natl Acad Sci USA 90: 7195-7199.
-
(1993)
P Natl Acad Sci USA
, vol.90
, pp. 7195-7199
-
-
Shakhnovich, E.1
Gutin, A.2
-
28
-
-
4243719017
-
New algorithm for protein design
-
Deutsch J, Kurosky T, (1996) New algorithm for protein design. Phys Rev Lett 76: 323-326.
-
(1996)
Phys Rev Lett
, vol.76
, pp. 323-326
-
-
Deutsch, J.1
Kurosky, T.2
-
29
-
-
40849116814
-
Maximum entropy approach for deducing amino acid interactions in proteins
-
Seno F, Trovato A, Banavar JR, Maritan A, (2008) Maximum entropy approach for deducing amino acid interactions in proteins. Phys Rev Lett 100: 1-4.
-
(2008)
Phys Rev Lett
, vol.100
, pp. 1-4
-
-
Seno, F.1
Trovato, A.2
Banavar, J.R.3
Maritan, A.4
-
30
-
-
0003399724
-
Understanding Molecular Simulations
-
Accademic Press
-
Frenkel D, Smit B, (2002) Understanding Molecular Simulations. Accademic Press.
-
(2002)
-
-
Frenkel, D.1
Smit, B.2
-
31
-
-
0000787540
-
Modified configurational bias monte carlo method for simulation of polymer systems
-
Vendruscolo M, (1997) Modified configurational bias monte carlo method for simulation of polymer systems. J Chem Phys 106: 2970-2976.
-
(1997)
J Chem Phys
, vol.106
, pp. 2970-2976
-
-
Vendruscolo, M.1
-
32
-
-
28444461529
-
Predicting the tolerance of proteins to random amino acid substitution
-
Wilke C, Bloom J, Drummond D, Raval A, (2005) Predicting the tolerance of proteins to random amino acid substitution. Biophys J 89: 3714-3720.
-
(2005)
Biophys J
, vol.89
, pp. 3714-3720
-
-
Wilke, C.1
Bloom, J.2
Drummond, D.3
Raval, A.4
-
33
-
-
36449005847
-
Ground-state of random copolymers and the discrete random energy-model
-
Gutin A, Shakhnovich E, (1993) Ground-state of random copolymers and the discrete random energy-model. J Chem Phys 98: 8174-8177.
-
(1993)
J Chem Phys
, vol.98
, pp. 8174-8177
-
-
Gutin, A.1
Shakhnovich, E.2
-
34
-
-
24944462252
-
Virtual-move parallel tempering
-
Coluzza I, Frenkel D, (2005) Virtual-move parallel tempering. ChemPhysChem 6: 1779-1783.
-
(2005)
ChemPhysChem
, vol.6
, pp. 1779-1783
-
-
Coluzza, I.1
Frenkel, D.2
-
35
-
-
11144230021
-
Speed-up of monte carlo simulations by sampling of rejected states
-
Frenkel D, (2004) Speed-up of monte carlo simulations by sampling of rejected states. P Natl Acad Sci USA 101: 17571-17575.
-
(2004)
P Natl Acad Sci USA
, vol.101
, pp. 17571-17575
-
-
Frenkel, D.1
-
36
-
-
79551662403
-
Accounting for protein-solvent contacts facilitates design of non- aggregating lattice proteins
-
Abeln S, Frenkel D, (2011) Accounting for protein-solvent contacts facilitates design of non- aggregating lattice proteins. Biophys J 100: 693-700.
-
(2011)
Biophys J
, vol.100
, pp. 693-700
-
-
Abeln, S.1
Frenkel, D.2
-
38
-
-
84871731691
-
Protein Data Bank website
-
Available:. Accesed 2011 May 20
-
Protein Data Bank website. Available: www.pdb.org. Accesed 2011 May 20.
-
-
-
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