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Volumn 86, Issue 2, 2011, Pages 182-187

Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures

Author keywords

Fatty acid analysis; FT IR spectroscopy; Mixed cultures; Polyhydroxybutyrate; Pseudomonas putida; Rhodococcus ruber

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACTERIUM CULTURE; BIOMASS; CONTROLLED STUDY; FATTY ACID ANALYSIS; GROWTH CURVE; INFRARED SPECTROSCOPY; MICROBIAL COMMUNITY; MICROBIAL POPULATION DYNAMICS; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; QUANTITATIVE ANALYSIS; RHODOCOCCUS; RHODOCOCCUS RUBER; RNA FINGERPRINTING;

EID: 79959741245     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.05.001     Document Type: Article
Times cited : (11)

References (45)
  • 1
    • 33748427775 scopus 로고    scopus 로고
    • Rapid detection and identification of Pseudomonas aeruginosa and Escherichia coli as pure and mixed cultures in bottled drinking water using Fourier transform infrared spectroscopy and multivariate analysis
    • Al-Qadiri H.M., Al-Holy M.A., Lin M.S., Alami N.I., Cavinato A.G., Rasco B.A. Rapid detection and identification of Pseudomonas aeruginosa and Escherichia coli as pure and mixed cultures in bottled drinking water using Fourier transform infrared spectroscopy and multivariate analysis. J. Agric. Food Chem. 2006, 54:5749-5754.
    • (2006) J. Agric. Food Chem. , vol.54 , pp. 5749-5754
    • Al-Qadiri, H.M.1    Al-Holy, M.A.2    Lin, M.S.3    Alami, N.I.4    Cavinato, A.G.5    Rasco, B.A.6
  • 2
    • 33747066076 scopus 로고    scopus 로고
    • Fourier transform infrared spectroscopy, detection and identification of Escherichia coli O157: H7 and Alicyclobacillus strains in apple juice
    • Al-Qadiri H.M., Lin M.S., Cavinato A.G., Rasco B.A. Fourier transform infrared spectroscopy, detection and identification of Escherichia coli O157: H7 and Alicyclobacillus strains in apple juice. Int. J. Food Microbiol. 2006, 111:73-80.
    • (2006) Int. J. Food Microbiol. , vol.111 , pp. 73-80
    • Al-Qadiri, H.M.1    Lin, M.S.2    Cavinato, A.G.3    Rasco, B.A.4
  • 3
    • 0033839931 scopus 로고    scopus 로고
    • Accumulation and mobilization of storage lipids by Rhodococcus opacus PD630 and Rhodococcus ruber NCIMB 40126
    • Alvarez H.M., Kalscheuer R., Steinbüchel A. Accumulation and mobilization of storage lipids by Rhodococcus opacus PD630 and Rhodococcus ruber NCIMB 40126. Appl. Microbiol. Biotechnol. 2000, 54:218-223.
    • (2000) Appl. Microbiol. Biotechnol. , vol.54 , pp. 218-223
    • Alvarez, H.M.1    Kalscheuer, R.2    Steinbüchel, A.3
  • 4
    • 0035370087 scopus 로고    scopus 로고
    • The identification of microorganisms by fluorescence in situ hybridisation
    • Amann R., Fuchs B.M., Behrens S. The identification of microorganisms by fluorescence in situ hybridisation. Curr. Opin. Biotechnol. 2001, 12:231-236.
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 6
    • 0035219970 scopus 로고    scopus 로고
    • Physiology, regulation, and limits of the synthesis of poly(3HB)
    • Babel W., Ackermann J.U., Breuer U. Physiology, regulation, and limits of the synthesis of poly(3HB). Adv. Biochem. Eng. Biotechnol. 2001, 71:125-157.
    • (2001) Adv. Biochem. Eng. Biotechnol. , vol.71 , pp. 125-157
    • Babel, W.1    Ackermann, J.U.2    Breuer, U.3
  • 8
    • 58149330647 scopus 로고    scopus 로고
    • Reliable identification of closely related Issatchenkia and Pichia species using artificial neural network analysis of Fourier-transform infrared spectra
    • Büchl N.R., Wenning M., Seiler H., Mietke-Hofmann H., Scherer S. Reliable identification of closely related Issatchenkia and Pichia species using artificial neural network analysis of Fourier-transform infrared spectra. Yeast. 2008, 25:787-798.
    • (2008) Yeast. , vol.25 , pp. 787-798
    • Büchl, N.R.1    Wenning, M.2    Seiler, H.3    Mietke-Hofmann, H.4    Scherer, S.5
  • 9
    • 58649114673 scopus 로고    scopus 로고
    • FT-IR spectroscopic characteristics of differently cultivated Escherichia coli
    • Filip Z., Hermann S., Demnerova K. FT-IR spectroscopic characteristics of differently cultivated Escherichia coli. Czech. J. Food. Sci. 2008, 26:458-463.
    • (2008) Czech. J. Food. Sci. , vol.26 , pp. 458-463
    • Filip, Z.1    Hermann, S.2    Demnerova, K.3
  • 10
    • 4143073761 scopus 로고    scopus 로고
    • FT-IR spectroscopic characteristics of differently cultivated Bacillus subtilis
    • Filip Z., Herrmann S., Kubat J. FT-IR spectroscopic characteristics of differently cultivated Bacillus subtilis. Microbiol. Res. 2004, 159:257-262.
    • (2004) Microbiol. Res. , vol.159 , pp. 257-262
    • Filip, Z.1    Herrmann, S.2    Kubat, J.3
  • 11
    • 29044440038 scopus 로고    scopus 로고
    • FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi
    • Fischer G., Braun S., Thissen R., Dott W. FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi. J. Microbiol. Methods. 2006, 64:63-77.
    • (2006) J. Microbiol. Methods. , vol.64 , pp. 63-77
    • Fischer, G.1    Braun, S.2    Thissen, R.3    Dott, W.4
  • 12
    • 0029147966 scopus 로고
    • Natural selection of PAH-degrading bacterial guilds at coal-tar disposal sites
    • Ghiorse W.C., Herrick J.B., Sandoli R.L., Madsen E.L. Natural selection of PAH-degrading bacterial guilds at coal-tar disposal sites. Environ. Health Perspect. 1995, 103(Suppl 5):107-111.
    • (1995) Environ. Health Perspect. , vol.103 , Issue.SUPPL. 5 , pp. 107-111
    • Ghiorse, W.C.1    Herrick, J.B.2    Sandoli, R.L.3    Madsen, E.L.4
  • 13
    • 34249777533 scopus 로고    scopus 로고
    • Biological hydrogen production from nitrogen-deficient substrates
    • Hafner S.D. Biological hydrogen production from nitrogen-deficient substrates. Biotechnol. Bioeng. 2007, 97:435-437.
    • (2007) Biotechnol. Bioeng. , vol.97 , pp. 435-437
    • Hafner, S.D.1
  • 14
    • 34748886657 scopus 로고    scopus 로고
    • Past: paleontological statistics software package for education and data analysis
    • Hammer Ø., Harper D.A.T., Paul D.R. Past: paleontological statistics software package for education and data analysis. Palaeontol Electronica 2001, vol. 4.
    • (2001) Palaeontol Electronica , vol.4
    • Hammer, Ø.1    Harper, D.A.T.2    Paul, D.R.3
  • 15
    • 37149022578 scopus 로고    scopus 로고
    • Rapid identification of fatty acid methyl esters using a multidimensional gas chromatography-mass spectrometry database
    • Härtig C. Rapid identification of fatty acid methyl esters using a multidimensional gas chromatography-mass spectrometry database. J. Chromatogr. A. 2008, 1177:159-169.
    • (2008) J. Chromatogr. A. , vol.1177 , pp. 159-169
    • Härtig, C.1
  • 16
    • 71249114781 scopus 로고    scopus 로고
    • Intertwined interspecies relationships: approaches to untangle the microbial network
    • Haruta S., Kato S., Yamamoto K., Igarashi Y. Intertwined interspecies relationships: approaches to untangle the microbial network. Environ. Microbiol. 2009, 11:2963-2969.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2963-2969
    • Haruta, S.1    Kato, S.2    Yamamoto, K.3    Igarashi, Y.4
  • 17
    • 0025869171 scopus 로고
    • Accumulation of a poly(hydroxyalkanoate) copolymer containing primarily 3-hydroxyvalerate from simple carbohydrate substrates by Rhodococcus sp. NCIMB 40126
    • Haywood G.W., Anderson A.J., Williams D.R., Dawes E.A., Ewing D.F. Accumulation of a poly(hydroxyalkanoate) copolymer containing primarily 3-hydroxyvalerate from simple carbohydrate substrates by Rhodococcus sp. NCIMB 40126. Int. J. Biol. Macromol. 1991, 13:83-88.
    • (1991) Int. J. Biol. Macromol. , vol.13 , pp. 83-88
    • Haywood, G.W.1    Anderson, A.J.2    Williams, D.R.3    Dawes, E.A.4    Ewing, D.F.5
  • 18
    • 0028835685 scopus 로고
    • Identification of some bacterial-cell components by FT-IR spectroscopy
    • Helm D., Naumann D. Identification of some bacterial-cell components by FT-IR spectroscopy. FEMS Microbiol. Lett. 1995, 126:75-79.
    • (1995) FEMS Microbiol. Lett. , vol.126 , pp. 75-79
    • Helm, D.1    Naumann, D.2
  • 19
    • 33846785316 scopus 로고    scopus 로고
    • Improvement in ammonium removal efficiency in wastewater treatment by mixed culture of Alcaligenes faecalis no. 4 and L1
    • Joo H.S., Hirai M., Shoda M. Improvement in ammonium removal efficiency in wastewater treatment by mixed culture of Alcaligenes faecalis no. 4 and L1. J. Biosci. Bioeng. 2007, 103:66-73.
    • (2007) J. Biosci. Bioeng. , vol.103 , pp. 66-73
    • Joo, H.S.1    Hirai, M.2    Shoda, M.3
  • 20
    • 70349396621 scopus 로고    scopus 로고
    • Multivariate concentration determination using principal component regression with residual analysis
    • Keithley R.B., Heien M.L., Wightman R.M. Multivariate concentration determination using principal component regression with residual analysis. Trac-Trends in Analytical Chemistry. 2009, 28:1127-1136.
    • (2009) Trac-Trends in Analytical Chemistry. , vol.28 , pp. 1127-1136
    • Keithley, R.B.1    Heien, M.L.2    Wightman, R.M.3
  • 21
    • 70149102453 scopus 로고    scopus 로고
    • Identification of Yersinia enterocolitica at the species and subspecies levels by Fourier transform infrared spectroscopy
    • Kuhm A.E., Suter D., Felleisen R., Rau J. Identification of Yersinia enterocolitica at the species and subspecies levels by Fourier transform infrared spectroscopy. Appl. Environ. Microbiol. 2009, 75:5809-5813.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5809-5813
    • Kuhm, A.E.1    Suter, D.2    Felleisen, R.3    Rau, J.4
  • 22
    • 0342864805 scopus 로고    scopus 로고
    • Rapid and reliable identification of food-borne yeasts by Fourier-transform infrared spectroscopy
    • Kümmerle M., Scherer S., Seiler H. Rapid and reliable identification of food-borne yeasts by Fourier-transform infrared spectroscopy. Appl. Environ. Microbiol. 1998, 64:2207-2214.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2207-2214
    • Kümmerle, M.1    Scherer, S.2    Seiler, H.3
  • 23
    • 33845907136 scopus 로고    scopus 로고
    • An alternative infrared spectroscopy assay for the quantification of polysaccharides in bacterial samples
    • Marcotte L., Kegelaer G., Sandt C., Barbeau J., Lafleur M. An alternative infrared spectroscopy assay for the quantification of polysaccharides in bacterial samples. Anal. Biochem. 2007, 361:7-14.
    • (2007) Anal. Biochem. , vol.361 , pp. 7-14
    • Marcotte, L.1    Kegelaer, G.2    Sandt, C.3    Barbeau, J.4    Lafleur, M.5
  • 24
    • 0037036699 scopus 로고    scopus 로고
    • Population analysis of a binary bacterial culture by multi-parametric flow cytometry
    • Müller S., Sträuber H., Lösche A., Babel W. Population analysis of a binary bacterial culture by multi-parametric flow cytometry. J. Biotechnol. 2002, 97:163-176.
    • (2002) J. Biotechnol. , vol.97 , pp. 163-176
    • Müller, S.1    Sträuber, H.2    Lösche, A.3    Babel, W.4
  • 25
    • 34250090314 scopus 로고
    • The differentiation and identification of pathogenic bacteria using FT-IR and multivariate statistical-analysis
    • Naumann D., Fijala V., Labischinski H. The differentiation and identification of pathogenic bacteria using FT-IR and multivariate statistical-analysis. Mikrochim Acta. 1988, 1:373-377.
    • (1988) Mikrochim Acta. , vol.1 , pp. 373-377
    • Naumann, D.1    Fijala, V.2    Labischinski, H.3
  • 26
    • 0026413442 scopus 로고
    • Microbiological characterizations by FT-IR spectroscopy
    • Naumann D., Helm D., Labischinski H. Microbiological characterizations by FT-IR spectroscopy. Nature. 1991, 351:81-82.
    • (1991) Nature. , vol.351 , pp. 81-82
    • Naumann, D.1    Helm, D.2    Labischinski, H.3
  • 27
    • 0002617883 scopus 로고
    • Characterization and identification of microorganisms by FT-IR spectroscopy and FT-IR microscopy
    • Plenum Press, NY, F.G. Priest, A. Ramos-Cormenzana, B.J. Tindall (Eds.)
    • Naumann D., Helm D., Schultz C. Characterization and identification of microorganisms by FT-IR spectroscopy and FT-IR microscopy. Bacterial diversity and systematics 1994, 67-85. Plenum Press, NY. F.G. Priest, A. Ramos-Cormenzana, B.J. Tindall (Eds.).
    • (1994) Bacterial diversity and systematics , pp. 67-85
    • Naumann, D.1    Helm, D.2    Schultz, C.3
  • 28
    • 0003087415 scopus 로고    scopus 로고
    • What can infrared spectroscopy tell us about the structure and composition of intact bacterial cells?
    • Wiley-Liss, Inc., New York, H.H. Mantsch, D. Chapman (Eds.)
    • Naumann D., Schultz C., Helm D. What can infrared spectroscopy tell us about the structure and composition of intact bacterial cells?. Infrared spectroscopy of biomolecules 1996, 279-310. Wiley-Liss, Inc., New York. H.H. Mantsch, D. Chapman (Eds.).
    • (1996) Infrared spectroscopy of biomolecules , pp. 279-310
    • Naumann, D.1    Schultz, C.2    Helm, D.3
  • 29
    • 84886639359 scopus 로고
    • Fourier transform-infrared spectroscopic methods for microbial ecology-analysis of bacteria, bacteria-polymer mixtures and biofilms
    • Nichols P.D., Henson J.M., Guckert J.B., Nivens D.E., White D.C. Fourier transform-infrared spectroscopic methods for microbial ecology-analysis of bacteria, bacteria-polymer mixtures and biofilms. J. Microbiol. Methods. 1985, 4:79-94.
    • (1985) J. Microbiol. Methods. , vol.4 , pp. 79-94
    • Nichols, P.D.1    Henson, J.M.2    Guckert, J.B.3    Nivens, D.E.4    White, D.C.5
  • 30
    • 0034106886 scopus 로고    scopus 로고
    • Quantification of micro-organisms in binary mixed populations by Fourier transform infrared (FT-IR) spectroscopy
    • Oberreuter H., Mertens F., Seiler H., Scherer S. Quantification of micro-organisms in binary mixed populations by Fourier transform infrared (FT-IR) spectroscopy. Lett. Appl. Microbiol. 2000, 30:85-89.
    • (2000) Lett. Appl. Microbiol. , vol.30 , pp. 85-89
    • Oberreuter, H.1    Mertens, F.2    Seiler, H.3    Scherer, S.4
  • 31
    • 4644275324 scopus 로고    scopus 로고
    • Evaluation of the robustness of FT-IR spectra of Lactobacilli towards changes in the bacterial growth conditions
    • Oust A., Moretro T., Kirschner C., Narvhus J.A., Kohler A. Evaluation of the robustness of FT-IR spectra of Lactobacilli towards changes in the bacterial growth conditions. FEMS Microbiol. Lett. 2004, 239:111-116.
    • (2004) FEMS Microbiol. Lett. , vol.239 , pp. 111-116
    • Oust, A.1    Moretro, T.2    Kirschner, C.3    Narvhus, J.A.4    Kohler, A.5
  • 32
    • 0029089413 scopus 로고
    • Short-chain fatty acids modulate growth of Lactobacilli in mixed culture fermentations with propionibacteria
    • Perez Chaia A., Strasser de Saad A.M., de Ruiz Holgado A.P., Oliver G. Short-chain fatty acids modulate growth of Lactobacilli in mixed culture fermentations with propionibacteria. Int. J. Food Microbiol. 1995, 26:365-374.
    • (1995) Int. J. Food Microbiol. , vol.26 , pp. 365-374
    • Perez Chaia, A.1    Strasser de Saad, A.M.2    de Ruiz Holgado, A.P.3    Oliver, G.4
  • 33
    • 33744806666 scopus 로고    scopus 로고
    • Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches
    • Ramsey P.W., Rillig M.C., Feris K.P., Holben W.E., Gannon J.E. Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches. Pedobiologia. 2006, 50:275-280.
    • (2006) Pedobiologia. , vol.50 , pp. 275-280
    • Ramsey, P.W.1    Rillig, M.C.2    Feris, K.P.3    Holben, W.E.4    Gannon, J.E.5
  • 34
    • 33846907141 scopus 로고    scopus 로고
    • Differentiation of Listeria monocytogenes serovars by using artificial neural network analysis of Fourier-transformed infrared spectra
    • Rebuffo-Scheer C.A., Schmitt J., Scherer S. Differentiation of Listeria monocytogenes serovars by using artificial neural network analysis of Fourier-transformed infrared spectra. Appl. Environ. Microbiol. 2007, 73:1036-1040.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1036-1040
    • Rebuffo-Scheer, C.A.1    Schmitt, J.2    Scherer, S.3
  • 35
    • 64549162927 scopus 로고    scopus 로고
    • Direct spectroscopic (FTIR) detection of intraspecific binary contaminations in yeast cultures
    • Rellini P., Roscini L., Fatichenti F., Morini P., Cardinali G. Direct spectroscopic (FTIR) detection of intraspecific binary contaminations in yeast cultures. FEMS Yeast Res. 2009, 9:460-467.
    • (2009) FEMS Yeast Res. , vol.9 , pp. 460-467
    • Rellini, P.1    Roscini, L.2    Fatichenti, F.3    Morini, P.4    Cardinali, G.5
  • 37
    • 33947422447 scopus 로고    scopus 로고
    • Variations in 13C/12C and D/H enrichment factors of aerobic bacterial fuel oxygenate degradation
    • Rosell M., Barcelo D., Rohwerder T., Breuer U., Gehre M., Richnow H.H. Variations in 13C/12C and D/H enrichment factors of aerobic bacterial fuel oxygenate degradation. Environ. Sci. Technol. 2007, 41:2036-2043.
    • (2007) Environ. Sci. Technol. , vol.41 , pp. 2036-2043
    • Rosell, M.1    Barcelo, D.2    Rohwerder, T.3    Breuer, U.4    Gehre, M.5    Richnow, H.H.6
  • 40
    • 0031107877 scopus 로고    scopus 로고
    • Artificial dental plaque biofilm model systems
    • Sissons C.H. Artificial dental plaque biofilm model systems. Adv. Dent. Res. 1997, 11:110-126.
    • (1997) Adv. Dent. Res. , vol.11 , pp. 110-126
    • Sissons, C.H.1
  • 41
    • 57449118500 scopus 로고    scopus 로고
    • Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
    • Smith C.J., Osborn A.M. Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol. Ecol. 2009, 67:6-20.
    • (2009) FEMS Microbiol. Ecol. , vol.67 , pp. 6-20
    • Smith, C.J.1    Osborn, A.M.2
  • 42
    • 0001115425 scopus 로고
    • Infrared spectophotometry as a means for identification of bacteria
    • Stevenson H.J.R., Bolduan O.E.A. Infrared spectophotometry as a means for identification of bacteria. Science. 1952, 116:111-113.
    • (1952) Science. , vol.116 , pp. 111-113
    • Stevenson, H.J.R.1    Bolduan, O.E.A.2
  • 43
    • 33847224177 scopus 로고    scopus 로고
    • FTIR spectroscopy in medical mycology: applications to the differentiation and typing of Candida
    • Toubas D., Essendoubi M., Adt I., Pinon J.M., Manfait M., Sockalingum G.D. FTIR spectroscopy in medical mycology: applications to the differentiation and typing of Candida. Anal. Bioanal. Chem. 2007, 387:1729-1737.
    • (2007) Anal. Bioanal. Chem. , vol.387 , pp. 1729-1737
    • Toubas, D.1    Essendoubi, M.2    Adt, I.3    Pinon, J.M.4    Manfait, M.5    Sockalingum, G.D.6
  • 44
    • 0036275064 scopus 로고    scopus 로고
    • Species diversity improves the efficiency of mercury-reducing biofilms under changing environmental conditions
    • Von Canstein H., Kelly S., Li Y., Wagner-Dobler I. Species diversity improves the efficiency of mercury-reducing biofilms under changing environmental conditions. Appl. Environ. Microbiol. 2002, 68:2829-2837.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2829-2837
    • Von Canstein, H.1    Kelly, S.2    Li, Y.3    Wagner-Dobler, I.4
  • 45
    • 60849110263 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa PAO1 pyocin production affects population dynamics within mixed-culture biofilms
    • Waite R.D., Curtis M.A. Pseudomonas aeruginosa PAO1 pyocin production affects population dynamics within mixed-culture biofilms. J. Bacteriol. 2009, 191:1349-1354.
    • (2009) J. Bacteriol. , vol.191 , pp. 1349-1354
    • Waite, R.D.1    Curtis, M.A.2


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