메뉴 건너뛰기




Volumn 210, Issue 1-3, 2011, Pages 102-109

Analysis of ancient human DNA and primer contamination: One step backward one step forward

Author keywords

Ancient human DNA; Authenticity; Contamination; PCR; Primers

Indexed keywords

MITOCHONDRIAL DNA;

EID: 79959545055     PISSN: 03790738     EISSN: 18726283     Source Type: Journal    
DOI: 10.1016/j.forsciint.2011.02.010     Document Type: Article
Times cited : (15)

References (62)
  • 1
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindhal T. Instability and decay of the primary structure of DNA. Nature 1993, 362:709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindhal, T.1
  • 5
    • 0141540851 scopus 로고    scopus 로고
    • Hypersensitive PCR, ancient human mtDNA and contamination
    • Yang D.Y., Eng B., Saunders S.R. Hypersensitive PCR, ancient human mtDNA and contamination. Hum. Biol. 2003, 75:355-364.
    • (2003) Hum. Biol. , vol.75 , pp. 355-364
    • Yang, D.Y.1    Eng, B.2    Saunders, S.R.3
  • 8
    • 40249119658 scopus 로고    scopus 로고
    • The impact of DNA contamination of bone samples in forensic case analysis and anthropological research
    • Wurmb-Schwark N.V., Heinrich A., Freudenberg M., Gebühr M., Schwark T. The impact of DNA contamination of bone samples in forensic case analysis and anthropological research. Leg. Med. 2008, 10:125-130.
    • (2008) Leg. Med. , vol.10 , pp. 125-130
    • Wurmb-Schwark, N.V.1    Heinrich, A.2    Freudenberg, M.3    Gebühr, M.4    Schwark, T.5
  • 9
    • 33750054970 scopus 로고    scopus 로고
    • Identification of the authentic ancient DNA in a human bone contaminated with modern DNA
    • Bouwman A.S., Chilvers E.R., Brown K.A., Brown T.A. Identification of the authentic ancient DNA in a human bone contaminated with modern DNA. Am. J. Phys. Anthropol. 2006, 131:428-431.
    • (2006) Am. J. Phys. Anthropol. , vol.131 , pp. 428-431
    • Bouwman, A.S.1    Chilvers, E.R.2    Brown, K.A.3    Brown, T.A.4
  • 11
    • 33646167599 scopus 로고    scopus 로고
    • Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA
    • Gilbert M.T.P., Hansen A.J., Willerslev E., Turner-Walker G., Collins M. Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA. Int. J. Osteoarchaeol. 2006, 16:156-164.
    • (2006) Int. J. Osteoarchaeol. , vol.16 , pp. 156-164
    • Gilbert, M.T.P.1    Hansen, A.J.2    Willerslev, E.3    Turner-Walker, G.4    Collins, M.5
  • 13
    • 0028840845 scopus 로고
    • Evidence of contamination in PCR laboratory disposables
    • Schmidt T., Hummel S., Herrmann B. Evidence of contamination in PCR laboratory disposables. Naturwissenschaften 1995, 82:423-431.
    • (1995) Naturwissenschaften , vol.82 , pp. 423-431
    • Schmidt, T.1    Hummel, S.2    Herrmann, B.3
  • 14
    • 0035695157 scopus 로고    scopus 로고
    • Use of DNase to eliminate contamination in ancient DNA analysis
    • Eshleman J., Smith D.G. Use of DNase to eliminate contamination in ancient DNA analysis. Electrophoresis 2001, 22:4316-4319.
    • (2001) Electrophoresis , vol.22 , pp. 4316-4319
    • Eshleman, J.1    Smith, D.G.2
  • 16
    • 25144473574 scopus 로고    scopus 로고
    • Use of bleach to eliminate contaminating DNA from the surface of bones and teeth
    • Kemp B.M., Smith D.G. Use of bleach to eliminate contaminating DNA from the surface of bones and teeth. Forensic Sci. Int. 2005, 154:53-61.
    • (2005) Forensic Sci. Int. , vol.154 , pp. 53-61
    • Kemp, B.M.1    Smith, D.G.2
  • 17
    • 41949090660 scopus 로고    scopus 로고
    • On the elimination of extraneous DNA in fossil human teeth with hypochlorite
    • Dissing J., Kristinsdottir M.A., Friis C. On the elimination of extraneous DNA in fossil human teeth with hypochlorite. J. Arch. Sci. 2008, 35:1445-1452.
    • (2008) J. Arch. Sci. , vol.35 , pp. 1445-1452
    • Dissing, J.1    Kristinsdottir, M.A.2    Friis, C.3
  • 18
    • 0001215415 scopus 로고
    • Authenticating DNA extracted from ancient skeletal remains
    • Richards M.B., Sykes B.C. Authenticating DNA extracted from ancient skeletal remains. J. Arch. Sci. 1995, 22:291-299.
    • (1995) J. Arch. Sci. , vol.22 , pp. 291-299
    • Richards, M.B.1    Sykes, B.C.2
  • 19
    • 0033988047 scopus 로고    scopus 로고
    • Ancient DNA analysis of human populations
    • Kolman C.J., Tuross N. Ancient DNA analysis of human populations. Am. J. Phys. Anthropol. 2000, 111:5-23.
    • (2000) Am. J. Phys. Anthropol. , vol.111 , pp. 5-23
    • Kolman, C.J.1    Tuross, N.2
  • 20
    • 85044710452 scopus 로고    scopus 로고
    • Ancient DNA: do it right or not at all
    • Cooper A., Poinar H.N. Ancient DNA: do it right or not at all. Sciences 2000, 289:1139.
    • (2000) Sciences , vol.289 , pp. 1139
    • Cooper, A.1    Poinar, H.N.2
  • 21
    • 85023036487 scopus 로고    scopus 로고
    • The top 10 list: criteria of authenticity for DNA from ancient and forensic samples
    • Poinar H.N. The top 10 list: criteria of authenticity for DNA from ancient and forensic samples. Int. Cong. Ser. 2003, 1239:575-579.
    • (2003) Int. Cong. Ser. , vol.1239 , pp. 575-579
    • Poinar, H.N.1
  • 22
    • 0344679863 scopus 로고
    • Removal of colouring, inhibitors of PCR, and the carrier effect of PCR contamination from ancient DNA samples
    • Cooper A. Removal of colouring, inhibitors of PCR, and the carrier effect of PCR contamination from ancient DNA samples. Anc. DNA Newslett. 1992, 1:31-32.
    • (1992) Anc. DNA Newslett. , vol.1 , pp. 31-32
    • Cooper, A.1
  • 25
    • 0038024442 scopus 로고    scopus 로고
    • Anthropologists cast doubt on human DNA evidence
    • Abbot A. Anthropologists cast doubt on human DNA evidence. Nature 2003, 423:468.
    • (2003) Nature , vol.423 , pp. 468
    • Abbot, A.1
  • 26
    • 0037492880 scopus 로고    scopus 로고
    • Were Cro-Magnons too like us for DNA to tell?
    • Barbujani G., Bertorelle G. Were Cro-Magnons too like us for DNA to tell?. Nature 2003, 424:127.
    • (2003) Nature , vol.424 , pp. 127
    • Barbujani, G.1    Bertorelle, G.2
  • 27
    • 78651469244 scopus 로고    scopus 로고
    • Les sépultures de l'atoll de Temoe (archipel des Gambier)
    • Murail P., Conte E. Les sépultures de l'atoll de Temoe (archipel des Gambier). Doss. Archéol. Polyn. 2005, 4:164-172.
    • (2005) Doss. Archéol. Polyn. , vol.4 , pp. 164-172
    • Murail, P.1    Conte, E.2
  • 28
    • 78651517008 scopus 로고    scopus 로고
    • Human ancient and extant mtDNA from the Gambier Islands (French Polynesia): evidence for an early Melanesian maternal contribution and new perspectives into the settlement of Easternmost Polynesia
    • Deguilloux M.F., Pemonge M.H., Dubut V., Hughes S., Hänni C., Chollet L., Conte E., Murail P. Human ancient and extant mtDNA from the Gambier Islands (French Polynesia): evidence for an early Melanesian maternal contribution and new perspectives into the settlement of Easternmost Polynesia. Am. J. Phys. Anthropol. 2011, 144:248-257.
    • (2011) Am. J. Phys. Anthropol. , vol.144 , pp. 248-257
    • Deguilloux, M.F.1    Pemonge, M.H.2    Dubut, V.3    Hughes, S.4    Hänni, C.5    Chollet, L.6    Conte, E.7    Murail, P.8
  • 33
    • 0031883919 scopus 로고    scopus 로고
    • Analyse paléogénétique des sujets de la grotte sépulcrale d'Elzarreko Karbia (Bronze ancien, Pays Basque)
    • Fily M.L., Crubézy E., Courtaud P., Keyser C., Ebrard D., Ludes B. Analyse paléogénétique des sujets de la grotte sépulcrale d'Elzarreko Karbia (Bronze ancien, Pays Basque). CR Acad. Sci. 1998, 321:79-85.
    • (1998) CR Acad. Sci. , vol.321 , pp. 79-85
    • Fily, M.L.1    Crubézy, E.2    Courtaud, P.3    Keyser, C.4    Ebrard, D.5    Ludes, B.6
  • 34
    • 0033064929 scopus 로고    scopus 로고
    • DNA preservation: a microsatellite-DNA study on ancient skeletal remains
    • Burger J., Hummel S., Hermann B., Henke W. DNA preservation: a microsatellite-DNA study on ancient skeletal remains. Electrophoresis 1999, 20:1722-1728.
    • (1999) Electrophoresis , vol.20 , pp. 1722-1728
    • Burger, J.1    Hummel, S.2    Hermann, B.3    Henke, W.4
  • 35
    • 0033358674 scopus 로고    scopus 로고
    • An mtDNA analysis in ancient Basque populations: implications for haplogroup V as a marker for a major paleolithic expansion from southwestern Europe
    • Izagirre N., De La Rua C. An mtDNA analysis in ancient Basque populations: implications for haplogroup V as a marker for a major paleolithic expansion from southwestern Europe. Am. J. Hum. Genet. 1999, 65:199-207.
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 199-207
    • Izagirre, N.1    De La Rua, C.2
  • 36
    • 0345435181 scopus 로고    scopus 로고
    • Demonstration and semi-quantification of mtDNA from human dentine and its relation to age
    • Mörnstad H., Pfeiffer H., Yoon C., Teivens A. Demonstration and semi-quantification of mtDNA from human dentine and its relation to age. Int. J. Leg. Med. 1999, 112:98-100.
    • (1999) Int. J. Leg. Med. , vol.112 , pp. 98-100
    • Mörnstad, H.1    Pfeiffer, H.2    Yoon, C.3    Teivens, A.4
  • 41
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter M., Jaenicke V., Serre D., Haeseler A.A., Pääbo S. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 2001, 29:4793-4799.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    Haeseler, A.A.4    Pääbo, S.5
  • 42
    • 0035199540 scopus 로고    scopus 로고
    • Pitfalls in the analysis of mitochondrial DNA from ancient specimens and the consequences for forensic DNA analysis: the historical case of the putative heart of Louis XVII
    • Jehaes E., Toprak K., Vanderheyden N., Pfeiffer H., Cassiman J.J., Brinkmann B., Decorte R. Pitfalls in the analysis of mitochondrial DNA from ancient specimens and the consequences for forensic DNA analysis: the historical case of the putative heart of Louis XVII. Int. J. Leg. Med. 2001, 115:135-141.
    • (2001) Int. J. Leg. Med. , vol.115 , pp. 135-141
    • Jehaes, E.1    Toprak, K.2    Vanderheyden, N.3    Pfeiffer, H.4    Cassiman, J.J.5    Brinkmann, B.6    Decorte, R.7
  • 43
    • 0035039279 scopus 로고    scopus 로고
    • Ancient mitochondrial DNA evidence for prehistoric population movement: the Numic expansion
    • Kaestle F.A., Smith D.G. Ancient mitochondrial DNA evidence for prehistoric population movement: the Numic expansion. Am. J. Phys. Anthropol. 2001, 115:1-12.
    • (2001) Am. J. Phys. Anthropol. , vol.115 , pp. 1-12
    • Kaestle, F.A.1    Smith, D.G.2
  • 46
    • 0037085492 scopus 로고    scopus 로고
    • Enzymatic repair of selected cross-linked homoduplex molecules enhances nuclear gene rescue from Pompeii and Herculaneum remains
    • Di Bernardo G., Del Gaudio S., Cammarota M., Galderisi U., Cascino A., Cipollaro M. Enzymatic repair of selected cross-linked homoduplex molecules enhances nuclear gene rescue from Pompeii and Herculaneum remains. Nucleic Acids Res. 2002, 30:e16.
    • (2002) Nucleic Acids Res. , vol.30
    • Di Bernardo, G.1    Del Gaudio, S.2    Cammarota, M.3    Galderisi, U.4    Cascino, A.5    Cipollaro, M.6
  • 48
    • 0037931471 scopus 로고    scopus 로고
    • Degradation of DNA in artificially charred wheat seeds
    • Threadgold J., Brown T.A. Degradation of DNA in artificially charred wheat seeds. J. Arch. Sci. 2003, 30:1067-1076.
    • (2003) J. Arch. Sci. , vol.30 , pp. 1067-1076
    • Threadgold, J.1    Brown, T.A.2
  • 49
    • 4544348419 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human ancient mitochondrial DNA
    • Adachi N., Umetsu K., Takigawa W., Sakaue K. Phylogenetic analysis of the human ancient mitochondrial DNA. J. Arch. Sci. 2004, 31:1339-1348.
    • (2004) J. Arch. Sci. , vol.31 , pp. 1339-1348
    • Adachi, N.1    Umetsu, K.2    Takigawa, W.3    Sakaue, K.4
  • 50
    • 9444282009 scopus 로고    scopus 로고
    • Molecular genetic characteristics of medieval populations of the Russian north
    • Kulikov E.E., Buzhilova A.P., Poltaraus A.B. Molecular genetic characteristics of medieval populations of the Russian north. Russ. J. Genet. 2004, 40:1-9.
    • (2004) Russ. J. Genet. , vol.40 , pp. 1-9
    • Kulikov, E.E.1    Buzhilova, A.P.2    Poltaraus, A.B.3
  • 51
    • 0346009097 scopus 로고    scopus 로고
    • Non random DNA damage resulting from heat treatment: implications for sequence analysis of ancient DNA
    • Banerjee M., Brown T.A. Non random DNA damage resulting from heat treatment: implications for sequence analysis of ancient DNA. J. Arch. Sci. 2004, 31:59-63.
    • (2004) J. Arch. Sci. , vol.31 , pp. 59-63
    • Banerjee, M.1    Brown, T.A.2
  • 52
    • 1942469380 scopus 로고    scopus 로고
    • Spiking of contemporary human template DNA with ancient DNA extracts induces mutations under PCR and generates non-authentic mitochondrial sequences
    • Pusch C.M., Bachmann L. Spiking of contemporary human template DNA with ancient DNA extracts induces mutations under PCR and generates non-authentic mitochondrial sequences. Mol. Biol. Evol. 2004, 21:957-964.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 957-964
    • Pusch, C.M.1    Bachmann, L.2
  • 54
    • 1642325925 scopus 로고    scopus 로고
    • A simple duplex-PCR to evaluate the DNA quality of anthropological and forensic samples prior short tandem repeat typing
    • Wurmb-Schwark N.V., Schwark T., Harbeck M., Oehmichen M. A simple duplex-PCR to evaluate the DNA quality of anthropological and forensic samples prior short tandem repeat typing. Leg. Med. 2004, 6:80-88.
    • (2004) Leg. Med. , vol.6 , pp. 80-88
    • Wurmb-Schwark, N.V.1    Schwark, T.2    Harbeck, M.3    Oehmichen, M.4
  • 57
    • 28944434866 scopus 로고    scopus 로고
    • Tracing the phylogeography of human populations in Britain based on 4th-11th century mtDNA genotypes
    • Töpf A., Gilbert M.T.P., Dumbacher J.P., Hoelzel A.R. Tracing the phylogeography of human populations in Britain based on 4th-11th century mtDNA genotypes. Mol. Biol. Evol. 2006, 23:152-161.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 152-161
    • Töpf, A.1    Gilbert, M.T.P.2    Dumbacher, J.P.3    Hoelzel, A.R.4
  • 60
    • 14744297241 scopus 로고    scopus 로고
    • Contamination controls when preparing archaeological remains for ancient DNA analysis
    • Yang D.Y., Watt K. Contamination controls when preparing archaeological remains for ancient DNA analysis. J. Arch. Sci. 2004, 32:331-336.
    • (2004) J. Arch. Sci. , vol.32 , pp. 331-336
    • Yang, D.Y.1    Watt, K.2
  • 62
    • 27144476169 scopus 로고    scopus 로고
    • Mosaic of ancient mitochondrial DNA: positive indicators of nonauthenticity
    • Bandelt H.J. Mosaic of ancient mitochondrial DNA: positive indicators of nonauthenticity. Eur. J. Hum. Genet. 2005, 13:1106-1112.
    • (2005) Eur. J. Hum. Genet. , vol.13 , pp. 1106-1112
    • Bandelt, H.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.