Ancient DNA analysis of human populations

American Journal of Physical Anthropology

Volumn 111, Issue 1, 2000, Pages 5-23

  Kolman, Connie J ^a,b   Tuross, Noreen ^a  

^a Smithsonian Center for Materials Research and Education   (United States)

^b NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM   (United States)

Author keywords

aDNA; Mitochondrial DNA; New World; PCR contamination

Indexed keywords

DNA; MITOCHONDRIAL DNA;

AMINO ACID SEQUENCE; ARTICLE; BONE; DNA SEQUENCE; HAPLOTYPE; HUMAN; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SKELETON;

ANIMALS; DNA; DNA, MITOCHONDRIAL; EVOLUTION; HOMINIDAE; HUMANS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; SPECIMEN HANDLING;

EID: 0033988047     PISSN: 00029483     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1096-8644(200001)111:1<5::AID-AJPA2>3.0.CO;2-3     Document Type: Article

References (44)

1. Anderson S, Bankier AT, Barrell BG, de Bruijn MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG. 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
2. Austin JJ, Ross AJ, Smith AB, Fortey RA, Thomas RH. 1997a. Problems of reproducibility - does geologically ancient DNA survive in amber-preserved insects? Proc R Soc Lond [Biol] 264:467-474.
3. Austin JJ, Smith AB, Thomas RH. 1997b. Palaeontology in a molecular world: the search for authentic ancient DNA. Trends Ecol Evol 12:303-306.
4. Cano RJ, Poinar HN, Pieniazek NJ, Acra A, Poinar GO. 1993. Amplification and sequencing of DNA from a 120-135-million-year-old weevil. Nature 363:536-538.
5. Colson IB, Bailey JF, Vercauteren M, Sykes BC, Hedges REM. 1997. The preservation of ancient DNA and bone diagenesis. Anc Biomole 1:109-117.
6. DeSalle R, Gatesy J, Wheeler W, Grimaldi D. 1992. DNA sequences from a fossil termite in Oligo-Miocene amber and their phylogenetic implications. Science 257:1933-1936.
7. DeSalle R, Barcia M, Wray C. 1993. PCR jumping in clones of 30 million-year-old DNA fragments from amber preserved termites (Mastotermes electrodominicus). Experientia 49:906-909.
8. Drancourt M, Aboudharam G, Signoli M, Dutour O, Raoult D. 1998. Detection of 400-year-old Yersinia pestis DNA in human dental pulp: an approach to the diagnosis of ancient septicemia. Proc Natl Acad Sei USA 95:12637-12640.
9. Fisher DL, Holland MM, Mitchell L, Sledzik PS, Webb Wilcox A, Wadhams M, Weedn VW. 1993. Extraction, evaluation, and amplification of DNA from decalcified and undecalcified United States Civil War bone. J Forensic Sci 38:60-68.
10. Forster P, Harding R, Torroni A, Bandelt H-J. 1996. Origin and evolution of Native American mtDNA variation: a reappraisal. Am J Hum Genet 59:935-945.
11. Golenberg EM, Giannassi DE, Clegg MT, Smiley CJ, Durbin M, Henderson D, Zurawski G. 1990. Chloroplast DNA sequence from a Miocene Magnolia species. Nature 344:656-658.
12. Greenberg JH, Turner CG II, Zegura SL. 1986. The settlement of the Americas: a comparison of the linguistic, dental, and genetic evidence. Curr Anthropol 27:477-497.
13. Handt O, Höss M, Krings M, Pääbo S. 1994. Ancient DNA: methodological challenges. Experientia 50:524-529.
14. Handt O, Krings M, Ward RH, Pääbo S. 1996. The retrieval of ancient human DNA sequences. Am J Hum Genet 59:368-376.
15. Hedges SB, Schweitzer MH. 1995. Detecting dinosaur DNA. Science 268:1191-1192.
16. Horai S, Hayasaka K. 1990. Intraspecific nucleotide sequence differences in the major noncoding region of human mitochondrial DNA. Am J Hum Genet 46:828-842.
17. Horai S, Kondo R, Nakagawa-Hattori Y, Hayashi S, Sonoda S, Tajima K. 1993. Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol Biol Evol 10:23-47.
18. Höss M, Pääbo S. 1993. DNA extraction from Pleistocene bones by a silica-based purification method. Nucleic Acids Res 21:3913-3914.
19. Jackson PJ, Hugh-Jones ME, Adair DM, Green G, Hill KK, Kuske CR, Grinberg LM, Abramova FA, Keim P. 1998. PCR analysis of tissue samples from the 1979 Sverdlovsk anthrax victims: the presence of multiple Bacillus anthracis strains in different victims. Proc Natl Acad Sei USA 95:1224-1229.
20. Kolman CJ, Bermingham E. 1997. Mitochondrial and nuclear DNA diversity in the Chocó and Chibcha Amerinds of Panama. Genetics 147:1289-1302.
21. Kolman CJ, Bermingham E, Cooke R, Ward RH, Arias T, Guionneau-Sinclair F. 1995. Reduced mtDNA diversity in the Ngöbé of Panamá. Genetics 140:275-283.
22. Kolman CJ, Sambuughin N, Bermingham E. 1996. Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142:1321-1334.
23. Krings M, Stone A, Schmitz RW, Krainitzki H, Stoneking M, Pääbo S. 1997. Neandertal DNA sequences and the origin of modern humans. Cell 90:19-30.
24. Lahermo P, Sajantila A, Sistonen P, Lukka M, Aula P, Peltonen L, Savontaus M-L. 1996. The genetic relationships between the Finns and the Finnish Saami (Lapps): analysis of nuclear DNA and mtDNA. Am J Hum Genet 58:1309-1322.
25. Lindahl T. 1993. Recovery of antediluvian DNA. Nature 365:700.
26. Merriwether DA, Rothhammer F, Ferrell RE. 1995. Distribution of the four founding lineage haplotypes in native Americans suggests a single wave of migration for the New World. Am J Phys Anthropol 98:411-430.
27. Pääbo S, Irwin DM, Wilson AC. 1990. DNA damage promotes jumping between templates during enzymatic amplification. J Biol Chem 265:4718-4721.
28. Poinar HN, Höss M, Bada JL, Pääbo S. 1996. Amino acid racemization and the preservation of ancient DNA. Science 272:864-866.
29. Richards MB, Sykes BC, Hedges REM. 1995. Authenticating DNA extracted from ancient skeletal remains. J Archeol Sci 22:291-299.
30. Richards M, Côrte-Real H, Forster P, Macaulay V, Wilkinson-Herbots H, Demaine A, Papiha S, Hedges R, Bandelt H-J, Sykes B. 1996. Paleolithic and neolithic lineages in the European mitochondrial gene pool. Am J Hum Genet 59:185-203.
31. Ruano G, Pagliaro EM, Schwartz TR, Lamy K, Messina D, Gaensslen RE, Lee HC. 1992. Heat-soaked PCR: an efficient method for DNA amplification with applications to forensic analysis. Biotechniques 13:266-274.
32. Salo WL, Aufderheide AD, Buikstra J, Holcomb TA. 1994. Identification of Mycobacterium tuberculosis DNA in a pre-Columbian Peruvian mummy. Proc Natl Acad Sci USA 91:2091-2094.
33. Sarkar G, Sommer SS. 1990. Shedding light on PCR contamination. Nature 343:27.
34. Sidow A, Wilson AC, Pääbo S. 1991. Bacterial DNA in Clarkia fossils. Philos Trans R Soc Lond [Biol] 333:429-433.
35. Stone AC, Stoneking M. 1998. mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. Am J Hum Genet 62:1153-1170.
36. Torroni A, Schurr TG, Yang C-C, Szathmary EJE, Williams RC, Schanfield MS, Troup GA, Knowler WC, Lawrence DN, Weiss KM, Wallace DC. 1992. Native American mitochondrial DNA analysis indicates that the Amerind and Nadene populations were founded by two independent migrations. Genetics 130:153-162.
37. Torroni A, Schurr TG, Cabell MF, Brown MD, Neel JV, Larsen M, Smith DG, Vullo CM, Wallace DC. 1993. Asian affinities and continental radiation of the four founding Native American mtDNAs. Am J Hum Genet 53:563-590.
38. Torroni A, Huoponen K, Franclacci P, Petrozzi M, Morelli L, Scozzari R, Obinu D, Savontaus M-L, Wallace DC. 1996. Classification of European mtDNAs from an analysis of three European populations. Genetics 144:1835-1850.
39. Wan C-Y, Wilkins TA. 1993. Spermidine facilitates PCR amplification of target DNA. PCR Methods Applic 3:208-210.
40. Ward RH, Frazier BL, Dew-Jager K, Pääbo S. 1991. Extensive mitochondrial diversity within a single Amerindian tribe. Proc Natl Acad Sei USA 88:8720-8724.
41. Ward RH, Redd A, Valencia D, Frazier B, Pääbo S. 1993. Genetic and linguistic differentiation in the Americas. Proc Natl Acad Sci USA 90:10663-10667.
42. Watson E, Forster P, Richards M, Bandelt H-J. 1997. Mitochondrial footprints of human expansions in Africa. Am J Hum Genet 61:691-704.
43. Woodward SR, Weyand NJ, Bunnell M. 1994. DNA sequence from Cretaceous period bone fragments. Science 266:1229-1232.
44. Wrischnik LA, Higuchi RG, Stoneking M, Erlich HA, Arnheim N, Wilson AC. 1987. Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA. Nucleic Acids Res 15:529-542.