Phylogenetic analysis of the human ancient mitochondrial DNA

Journal of Archaeological Science

Volumn 31, Issue 10, 2004, Pages 1339-1348

  Adachi, Noboru ^a   Umetsu, Kazuo ^b   Takigawa, Wataru ^a   Sakaue, Kazuhiro ^a  

^a TOHOKU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b YAMAGATA UNIVERSITY   (Japan)

Author keywords

Amplified product length polymorphisms; Ancient DNA; Mitochondrial DNA; Population study; Single nucleotide polymorphisms

Indexed keywords

PHYLOGENETICS;

EID: 4544348419     PISSN: 03054403     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jas.2004.02.011     Document Type: Article

References (25)

1. Alves-Silva J. Santos M.D.S. Guimarães P.E.M. Ferreira A.C.S. Bandelt H.J. Pena S.D.J. Prado V.F. The ancestry of Brazilian mtDNA linages American Journal of Human Genetics 67 2000 444-461
2. Andrews R.M. Kubacka I. Chinnery P.F. Lightowlers R.N. Turnbull D.M. Howell N. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA Nature Genetics 23 1999 147
3. Bandelt H.J. Lahermo P. Richards M. Macaulay V. Detecting errors in mtDNA data by phylogenetic analysis International Journal of Legal Medicine 115 2001 64-69
4. Fox C.L. Mitochondrial DNA haplogroups in four tribes from Tierra del Fuego-Patagonia: influences about the peopling of Americas Human Biology 68 1996 855-871
5. Gilbert M.T.P. Willerslev E. Hansen A.J. Barnes I. Rudbeck L. Lynnerup N. Cooper A. Distribution patterns of postmortem damage in human mitochondrial DNA American Journal of Human Genetics 72 2003 32-47
6. Kikuchi I. Famines in early-modern Japan 1997 1-260 Yoshikawa-Koubunnkan, Ltd Tokyo
7. Kito H. Edo system as a civilization 2002 34-55 Koudansya, Ltd Tokyo
8. Kivisild T. Tolk H.V. Parik J. Wang Y. Papiha S.S. Bandelt H.J. Villems R. The emerging limbs and twigs of the East Asian mtDNA tree Molecular Biology and Evolution 19 10 2002 1737-1751
9. Y. Koida, The History of Nangou Village, Nangou Village, Aomori, 1995, pp. 433-481 (in Japanese)
10. Kolman C.J. Tuross N. Ancient DNA analysis of human populations American Journal of Physical Anthropology 111 2000 5-23
11. Kong Q.-P. Yao Y.-G. Sun C. Bandelt H.J. Zhu C.-L. Zhang Y.-P. Phylogeny of East Asian mitochondrial DNA lineages inferred from complete sequences American Journal of Human Genetics 73 2003 671-676
12. Macaulay V. Richards M. Hickey E. Vega E. Cruciani F. Guida V. Scozzari R. Bonné-Tamir B. Sykes B. Torroni A. The emerging tree of west Eurasian mtDNAs: a synthesis of control-region sequence and RFLPs American Journal of Human Genetics 64 1999 232-249
13. Maruyama S. Minaguchi K. Saitou N. Sequence polymorphisms of the mitochondrial DNA control region and phylogenetic analysis of mtDNA lineages in the Japanese populations International Journal of Legal Medicine 117 2003 218-225
14. Oota H. Saitou N. Matsushita T. Ueda S. A genetic study of 2000-year-old human remains from Japan using mitochondrial DNA sequences American Journal of Physical Anthropology 98 1995 133-145
15. Oota H. Saitou N. Matsushita T. Ueda S. Molecular genetic analysis of remains of a 2000-year-old human population in China-and its relevance for the origin of the modern Japanese population American Journal of Human Genetics 64 1999 250-258
16. Parr R.L. Carlyle S.W. O'Rourke D. Ancient DNA analysis of Fremont Amerindians of the Great Salt Lake wetlands American Journal of Physical Anthropology 99 1996 507-518
17. Quintana-Murci L. Semino O. Bandelt H.J. Passarino G. McElreavey K. Santachiara-Benerecetti A.S. Genetic evidence for an early exit of Homo sapiens sapiens from Africa through eastern Africa Nature Genetics 23 1999 437-441
18. T. Sato, A summary of ruins and artifacts in Edo period, in: Aomori Board of Education (Eds.), The Hatanai Site VIII, Aomori: Aomori Prefecture, 2002, pp. 320-338 (in Japanese)
19. Shinoda K. Kanai S. Intracemetry genetic analysis at the Nakazuma Jomon site in Japan by mitochondrial DNA sequencing Anthropological Science 107 1999 129-140
20. Stone A.C. Stoneking M. mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the new world American Journal of Human Genetics 62 1998 1153-1170
21. W. Takigawa, Y. Kawakubo, T. Maeda, K. Sakaue, F. Saeki, J. Sawada, N. Adachi, H. Imoto, S. Eba, H. Kitamura, M. Kondo, Y. Dodo, About the skeletons unearthed from the Hatanai site, in: Aomori Board of Education (Eds.), The Hatanai Site VIII, Aomori: Aomori Prefecture, 2002, pp. 254-282 (in Japanese)
22. Torroni A. Richards M. Macaulay V. Foster P. Villems R. Nørby S. Savontaus M.L. Huoponen K. Scozzari R. Bandelt H.J. mtDNA haplogroups and frequency patterns in Europe American Journal of Human Genetics 66 2000 1173-1177
23. Umetsu K. Tanaka M. Yuasa I. Saitou N. Takeyasu T. Fuku N. Naito E. Ago K. Nakayashiki N. Miyoshi A. Kashimura S. Watanabe G. Osawa M. Multiplex amplified product-length polymorphism analysis for rapid detection of human mitochondrial DNA variations Electrophoresis 22 2001 3533-3538
24. Yao Y.-G. Kong Q.-P. Bandelt H.J. Kivisild T. Zhang Y.-P. Phylogenetic differentiation of mitochondrial DNA in Han Chinese American Journal of Human Genetics 70 2002 635-651
25. Yao Y.-G. Kong Q.-P. Man X.-Y. Bandelt H.J. Zhang Y.-P. Reconstructing the evolutionary history of China: a caveat about inferences drawn from ancient DNA Molecular Biology and Evolution 20 2 2003 214-219