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Volumn 64, Issue 1, 2011, Pages 15-25

Bacterial diversity in the bottom boundary layer of the inner continental shelf of Oregon, USA

Author keywords

16s rRNA gene; Continental shelf; Northeast pacific ocean; T RFLP

Indexed keywords

BACTERIA (MICROORGANISMS); CHROMATIALES; GAMMAPROTEOBACTERIA; PLANCTOMYCETES; ROSEOBACTER;

EID: 79959451104     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01504     Document Type: Article
Times cited : (10)

References (49)
  • 2
    • 25144475996 scopus 로고    scopus 로고
    • Marine microorganisms and global nutrient cycles
    • DOI 10.1038/nature04159, PII N04159
    • Arrigo KR (2005) Marine microorganisms and global nutrient cycles. Nature 437:349-355. (Pubitemid 41613490)
    • (2005) Nature , vol.437 , Issue.7057 , pp. 349-355
    • Arrigo, K.R.1
  • 3
    • 0036151745 scopus 로고    scopus 로고
    • Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean
    • DOI 10.1128/AEM.68.2.505-518.2002
    • Bano N, Hollibaugh JT (2002) Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl Environ Microbiol 68:505-518. (Pubitemid 34113034)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.2 , pp. 505-518
    • Bano, N.1    Hollibaugh, J.T.2
  • 4
    • 0032958469 scopus 로고    scopus 로고
    • Thiorhodospira sibirica gen. nov., sp. nov., a new alkaliphilic purple sulfur bacterium from a Siberian soda lake
    • Bryantseva I, Gorlenko VM, Kompantseva EI, Imhoff JF, Suling J, Mityushina L (1999) Thiorhodospira sibirica gen. nov., sp. nov., a new alkaliphilic purple sulfur bacterium from a Siberian soda lake. Int J Syst Bacteriol 49:697-703. (Pubitemid 29222362)
    • (1999) International Journal of Systematic Bacteriology , vol.49 , Issue.2 , pp. 697-703
    • Bryantseva, I.1
  • 6
    • 39349088120 scopus 로고    scopus 로고
    • Emergence of anoxia in the California current large marine ecosystem
    • DOI 10.1126/science.1149016
    • Chan F, Barth JA, Lubchenco J, Kirincich A, Weeks H, Peterson WT, Menge BA (2008) Emergence of anoxia in the California current large marine ecosystem. Science 319: 920. (Pubitemid 351263755)
    • (2008) Science , vol.319 , Issue.5865 , pp. 920
    • Chan, F.1    Barth, J.A.2    Lubchenco, J.3    Kirincich, A.4    Weeks, H.5    Peterson, W.T.6    Menge, B.A.7
  • 8
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong EF, Franks DG, Alldredge AL (1993) Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages. Limnol Oceanogr 38:924-934. (Pubitemid 24408401)
    • (1993) Limnology & Oceanography , vol.38 , Issue.5 , pp. 924-934
    • Delong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 11
    • 0018935706 scopus 로고
    • Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California
    • Fuhrman JA, Azam F (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California. Appl Environ Microbiol 39: 1085-1095. (Pubitemid 10001970)
    • (1980) Applied and Environmental Microbiology , vol.39 , Issue.6 , pp. 1085-1095
    • Fuhrman, J.A.1    Azam, F.2
  • 14
    • 0041029935 scopus 로고    scopus 로고
    • Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class Proteobacteria
    • Gonzalez JM, Kiene RP, Moran MA (1999) Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class Proteobacteria. Appl Environ Microbiol 65:3810-3819.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3810-3819
    • Gonzalez, J.M.1    Kiene, R.P.2    Moran, M.A.3
  • 16
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibro - bacter species in the Atlantic and Pacific Oceans
    • Gordon DA, Giovannoni SJ (1996) Detection of stratified microbial populations related to Chlorobium and Fibro - bacter species in the Atlantic and Pacific Oceans. Appl Environ Microbiol 62:1171-1177.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 17
    • 0022439379 scopus 로고
    • The continental-shelf bottom boundary-layer
    • Grant WD, Madsen OS (1986) The continental-shelf bottom boundary-layer. Annu Rev Fluid Mech 18:265-305.
    • (1986) Annu Rev Fluid Mech , vol.18 , pp. 265-305
    • Grant, W.D.1    Madsen, O.S.2
  • 18
    • 3042596603 scopus 로고    scopus 로고
    • Upwelling-driven nearshore hypoxia signals ecosystem and oceanographic changes in the northeast Pacific
    • DOI 10.1038/nature02605
    • Grantham BA, Chan F, Nielsen KJ, Fox DS and others (2004) Upwelling-driven nearshore hypoxia signals ecosystem and oceanographic changes in the northeast Pacific. Nature 429:749-754. (Pubitemid 38833124)
    • (2004) Nature , vol.429 , Issue.6993 , pp. 749-754
    • Grantham, B.A.1    Chan, F.2    Nielsen, K.J.3    Fox, D.S.4    Barth, J.A.5    Huyer, A.6    Lubchenco, J.7    Menge, B.A.8
  • 19
    • 48749128146 scopus 로고    scopus 로고
    • Abundant and diverse bacteria involved in DMSP degradation in marine surface waters
    • Howard EC, Sun S, Biers EJ, Moran MA (2008) Abundant and diverse bacteria involved in DMSP degradation in marine surface waters. Environ Microbiol 10:2397-2410.
    • (2008) Environ Microbiol , vol.10 , pp. 2397-2410
    • Howard, E.C.1    Sun, S.2    Biers, E.J.3    Moran, M.A.4
  • 20
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • DOI 10.1038/35054051
    • Karner MB, DeLong EF, Karl DM (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510. (Pubitemid 32144354)
    • (2001) Nature , vol.409 , Issue.6819 , pp. 507-510
    • Karner, M.B.1    Delong, E.F.2    Karl, D.M.3
  • 22
    • 59049088352 scopus 로고    scopus 로고
    • Detoxification of sulphidic African shelf waters by blooming chemolithotrophs
    • Lavik G, Stuhrmann T, Bruchert V, Van der Plas A and others (2009) Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature 457:581-586.
    • (2009) Nature , vol.457 , pp. 581-586
    • Lavik, G.1    Stuhrmann, T.2    Bruchert, V.3    Van Der, Plas.A.4
  • 24
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic archaea in the santa barbara channel
    • Massana R, Murray AE, Preston CM, DeLong EF (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol 63:50-56.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    Delong, E.F.4
  • 25
    • 25144481245 scopus 로고    scopus 로고
    • Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site
    • Morris RM, Vergin KL, Cho JC, Rappe MS, Carlson CA, Giovannoni SJ (2005) Temporal and spatial response of bac - terioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site. Limnol Oceanogr 50:1687-1696. (Pubitemid 41356448)
    • (2005) Limnology and Oceanography , vol.50 , Issue.5 , pp. 1687-1696
    • Morris, R.M.1    Vergin, K.L.2    Cho, J.-C.3    Rappe, M.S.4    Carlson, C.A.5    Giovannoni, S.J.6
  • 26
    • 33745768376 scopus 로고    scopus 로고
    • Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom
    • DOI 10.1111/j.1462-2920.2006.01029.x
    • Morris RM, Longnecker K, Giovannoni SJ (2006) Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom. Environ Microbiol 8: 1361-1370. (Pubitemid 44025330)
    • (2006) Environmental Microbiology , vol.8 , Issue.8 , pp. 1361-1370
    • Morris, R.M.1    Longnecker, K.2    Giovannoni, S.J.3
  • 27
    • 0028973868 scopus 로고
    • Primary production required to sustain global fisheries
    • Pauly D, Christensen V (1995) Primary production required to sustain global fisheries. Nature 374:255-257.
    • (1995) Nature , vol.374 , pp. 255-257
    • Pauly, D.1    Christensen, V.2
  • 29
    • 0038542838 scopus 로고    scopus 로고
    • Isolation and characterization of aggregate-forming sulfate-reducing and purple sulfur bacteria from the chemocline of meromictic Lake Cadagno, Switzerland
    • DOI 10.1016/S0168-6496(03)00107-7
    • Peduzzi S, Tonolla M, Hahn D (2003) Isolation and characterization of aggregate-forming sulfate-reducing and purple sulfur bacteria from the chemocline of meromictic Lake Cadagno, Switzerland. FEMS Microbiol Ecol 45:29-37. (Pubitemid 36694646)
    • (2003) FEMS Microbiology Ecology , vol.45 , Issue.1 , pp. 29-37
    • Peduzzi, S.1    Tonolla, M.2    Hahn, D.3
  • 30
    • 0031395502 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine coastal picoplankton 16s rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
    • Rappe MS, Kemp PF, Giovannoni SJ (1997) Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol Oceanogr 42:811-826. (Pubitemid 28278260)
    • (1997) Limnology and Oceanography , vol.42 , Issue.5 , pp. 811-826
    • Rappe, M.S.1    Kemp, P.F.2    Giovannoni, S.J.3
  • 31
    • 0033824875 scopus 로고    scopus 로고
    • Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
    • Rappe MS, Vergin K, Giovannoni SJ (2000) Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol Ecol 33:219-232.
    • (2000) FEMS Microbiol Ecol , vol.33 , pp. 219-232
    • Rappe, M.S.1    Vergin, K.2    Giovannoni, S.J.3
  • 32
    • 70349493025 scopus 로고    scopus 로고
    • Surface colonization by marine roseobacters: Integrating genotype and phenotype
    • Slightom RN, Buchan A (2009) Surface colonization by marine roseobacters: integrating genotype and phenotype. Appl Environ Microbiol 75:6027-6037.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6027-6037
    • Slightom, R.N.1    Buchan, A.2
  • 33
    • 62849125044 scopus 로고    scopus 로고
    • The photosynthetic apparatus and its regulation in the aerobic Gammaproteo-bacterium Congregibacter litoralis gen. nov. sp nov.
    • Spring S, Lunsdorf H, Fuchs BM, Tindall BJ (2009) The photosynthetic apparatus and its regulation in the aerobic Gammaproteo-bacterium Congregibacter litoralis gen. nov., sp nov. PLoS ONE 4:e4866.
    • (2009) PLoS ONE , vol.4
    • Spring, S.1    Lunsdorf, H.2    Fuchs, B.M.3    Tindall, B.J.4
  • 34
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
    • Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 178:591-599. (Pubitemid 26036628)
    • (1996) Journal of Bacteriology , vol.178 , Issue.3 , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    Delong, E.F.5
  • 35
    • 41849142283 scopus 로고    scopus 로고
    • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
    • DOI 10.1111/j.1462-2920.2007.01539.x
    • Stevens H, Ulloa O (2008) Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ Microbiol 10:1244-1259. (Pubitemid 351499241)
    • (2008) Environmental Microbiology , vol.10 , Issue.5 , pp. 1244-1259
    • Stevens, H.1    Ulloa, O.2
  • 36
    • 13944278075 scopus 로고    scopus 로고
    • Composition of free-living, aggregate-associated and sediment surface-associated bacterial communities in the German Wadden Sea
    • Stevens H, Brinkhoff T, Simon M (2005) Composition of freeliving, aggregate-associated and sediment surface-associated bacterial communities in the German Wadden Sea. Aquat Microb Ecol 38:15-30. (Pubitemid 40263298)
    • (2005) Aquatic Microbial Ecology , vol.38 , Issue.1 , pp. 15-30
    • Stevens, H.1    Brinkhoff, T.2    Simon, M.3
  • 37
    • 34247488726 scopus 로고    scopus 로고
    • The SAR92 clade: An abundant coastal clade of culturable marine bacteria possessing proteorhodopsin
    • DOI 10.1128/AEM.02559-06
    • Stingl U, Desiderio RA, Cho JC, Vergin KL, Giovannoni SJ (2007a) The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl Environ Microbiol 73:2290-2296. (Pubitemid 46649521)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.7 , pp. 2290-2296
    • Stingl, U.1    Desiderio, R.A.2    Cho, J.-C.3    Vergin, K.L.4    Giovannoni, S.J.5
  • 38
    • 34547775666 scopus 로고    scopus 로고
    • Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
    • DOI 10.1038/ismej.2007.49, PII ISMEJ200749
    • Stingl U, Tripp HJ, Giovannoni SJ (2007b) Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J 1:361-371. (Pubitemid 47227856)
    • (2007) ISME Journal , vol.1 , Issue.4 , pp. 361-371
    • Stingl, U.1    Tripp, H.J.2    Giovannoni, S.J.3
  • 39
    • 0035208354 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
    • DOI 10.1046/j.1462-2920.2001.00198.x
    • Suzuki MT, Beja O, Taylor LT, DeLong EF (2001) Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ Microbiol 3: 323-331. (Pubitemid 33141489)
    • (2001) Environmental Microbiology , vol.3 , Issue.5 , pp. 323-331
    • Suzuki, M.T.1    Beja, O.2    Taylor, L.T.3    DeLong, E.F.4
  • 40
    • 77954411154 scopus 로고    scopus 로고
    • Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria
    • Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ (2010) Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria. J Bacteriol 192:3842-3843.
    • (2010) J Bacteriol , vol.192 , pp. 3842-3843
    • Thrash, J.C.1    Cho, J.C.2    Ferriera, S.3    Johnson, J.4    Vergin, K.L.5    Giovannoni, S.J.6
  • 41
    • 0033848286 scopus 로고    scopus 로고
    • Bacteria in the cold deep-sea benthic boundary layer and sediment-water interface of the NE Atlantic
    • Turley C (2000) Bacteria in the cold deep-sea benthic boundary layer and sediment-water interface of the NE Atlantic. FEMS Microbiol Ecol 33:89-99.
    • (2000) FEMS Microbiol Ecol , vol.33 , pp. 89-99
    • Turley, C.1
  • 42
    • 0031927992 scopus 로고    scopus 로고
    • Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
    • Vergin KL, Urbach E, Stein JL, DeLong EF, Lanoil BD, Giovannoni SJ (1998) Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl Environ Microbiol 64:3075-3078. (Pubitemid 28363188)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.8 , pp. 3075-3078
    • Vergin, K.L.1    Urbach, E.2    Stein, J.L.3    DeLong, E.F.4    Lanoil, B.D.5    Giovannoni, S.J.6
  • 43
    • 70350502063 scopus 로고    scopus 로고
    • Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
    • Walsh DA, Zaikova E, Howes CG, Song YE and others (2009) Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578-582.
    • (2009) Science , vol.326 , pp. 578-582
    • Walsh, D.A.1    Zaikova, E.2    Howes, C.G.3    Song, Y.E.4
  • 44
    • 34547864862 scopus 로고    scopus 로고
    • The order Planctomycetales, including the genera Planctomyces, Pirellula, Gemmata, and Isosphaera, and the Candidatus genera Brocadia, Kuenenia, and Scalindua
    • Dworkin M (ed), 3rd edn. Springer-Verlag, New York, NY
    • Ward N, Staley JT, Fuerst JA, Giovannoni S, Schlesner H, Stackebrandt E (2006) The order Planctomycetales, including the genera Planctomyces, Pirellula, Gemmata, and Isosphaera, and the Candidatus genera Brocadia, Kuenenia, and Scalindua. In: Dworkin M (ed) The prokaryotes, 3rd edn. Springer-Verlag, New York, NY, p 757-793.
    • (2006) The Prokaryotes , pp. 757-793
    • Ward, N.1    Staley, J.T.2    Fuerst, J.A.3    Giovannoni, S.4    Schlesner, H.5    Stackebrandt, E.6
  • 45
    • 34548509019 scopus 로고    scopus 로고
    • Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes
    • DOI 10.1038/ismej.2007.63, PII ISMEJ200763
    • Woebken D, Teeling H, Wecker P, Dumitriu A and others (2007) Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes. ISME J 1: 419-435. (Pubitemid 47373248)
    • (2007) ISME Journal , vol.1 , Issue.5 , pp. 419-435
    • Woebken, D.1    Teeling, H.2    Wecker, P.3    Dumitriu, A.4    Kostadinov, I.5    Delong, E.F.6    Amann, R.7    Glockner, F.O.8
  • 48
    • 0017661043 scopus 로고
    • Production of volatile sulfur compounds during the decomposition of algal mats
    • Zinder SH, Doemel WN, Brock TD (1977) Production of volatile sulfur-compounds during decomposition of algal mats. Appl Environ Microbiol 34:859-860. (Pubitemid 8244883)
    • (1977) Applied and Environmental Microbiology , vol.34 , Issue.6 , pp. 859-860
    • Zinder, S.H.1    Doemel, W.N.2    Brock, T.D.3


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