메뉴 건너뛰기




Volumn 24, Issue 7, 2011, Pages 1618-1625

Signature of selection on the rhodopsin gene in the marine radiation of American seven-spined gobies (Gobiidae, Gobiosomatini)

Author keywords

Adaptive radiation; Elacatinus; Opsin genes; Photic environment; Photoreceptor; Phylogeny; Spectral tuning mechanism

Indexed keywords

RHODOPSIN;

EID: 79959339569     PISSN: 1010061X     EISSN: 14209101     Source Type: Journal    
DOI: 10.1111/j.1420-9101.2011.02290.x     Document Type: Article
Times cited : (6)

References (54)
  • 1
    • 0042208362 scopus 로고    scopus 로고
    • Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    • Anisimova, M., Nielsen, R. & Yang, Z.H. 2003. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164: 1229-1236.
    • (2003) Genetics , vol.164 , pp. 1229-1236
    • Anisimova, M.1    Nielsen, R.2    Yang, Z.H.3
  • 2
    • 0028289475 scopus 로고
    • Molecular determinants of human red/green color discrimination
    • Asenjo, A.B., Rim, J. & Oprian, D.D. 1994. Molecular determinants of human red/green color discrimination. Neuron 12: 1131-1138.
    • (1994) Neuron , vol.12 , pp. 1131-1138
    • Asenjo, A.B.1    Rim, J.2    Oprian, D.D.3
  • 3
    • 0037307413 scopus 로고    scopus 로고
    • Signatures of natural selection in the human genome
    • Bamshad, M. & Wooding, S.P. 2003. Signatures of natural selection in the human genome. Nat. Rev. Genet. 4: 99A-111A.
    • (2003) Nat. Rev. Genet. , vol.4
    • Bamshad, M.1    Wooding, S.P.2
  • 5
    • 0002578564 scopus 로고
    • Western Atlantic 7-spined gobies with descriptions of ten new species and a new genus and comments on Pacific relatives
    • Böhlke, J.E. & Robins, C.R. 1968. Western Atlantic 7-spined gobies with descriptions of ten new species and a new genus and comments on Pacific relatives. Proc. Acad. Nat. Sci. Philadelphia 120: 45-174.
    • (1968) Proc. Acad. Nat. Sci. Philadelphia , vol.120 , pp. 45-174
    • Böhlke, J.E.1    Robins, C.R.2
  • 6
    • 0030034406 scopus 로고
    • The visual pigments of fish
    • Bowmaker, J.K. 1995. The visual pigments of fish. Prog. Retin. Eye Res. 15: 1-31.
    • (1995) Prog. Retin. Eye Res. , vol.15 , pp. 1-31
    • Bowmaker, J.K.1
  • 7
    • 51349093264 scopus 로고    scopus 로고
    • Evolution of vertebrate visual pigments
    • Bowmaker, J.K. 2008. Evolution of vertebrate visual pigments. Vision Res. 48: 2022-2041.
    • (2008) Vision Res. , vol.48 , pp. 2022-2041
    • Bowmaker, J.K.1
  • 8
    • 0033304234 scopus 로고    scopus 로고
    • Modes of speciation: marine Indo-West Pacific
    • Briggs, J.C. 1999. Modes of speciation: marine Indo-West Pacific. Bull. Mar. Sci. 65: 645-656.
    • (1999) Bull. Mar. Sci. , vol.65 , pp. 645-656
    • Briggs, J.C.1
  • 9
    • 77953824017 scopus 로고    scopus 로고
    • Fishes as living tracers of connectivity in the tropical western North Atlantic: I. Distribution of the neon gobies, genus Elacatinus (Pisces: Gobiidae)
    • Colin, P.L. 2010. Fishes as living tracers of connectivity in the tropical western North Atlantic: I. Distribution of the neon gobies, genus Elacatinus (Pisces: Gobiidae). Zootaxa 2370: 36-52.
    • (2010) Zootaxa , vol.2370 , pp. 36-52
    • Colin, P.L.1
  • 10
    • 33845535826 scopus 로고    scopus 로고
    • Spatial and temporal scales of adaptive divergence in marine fishes and the implications for conservation
    • Conover, D.O., Clarke, L.M., Munch, S.B. & Wagner, G.N. 2006. Spatial and temporal scales of adaptive divergence in marine fishes and the implications for conservation. J. Fish Biol. 69: 21-47.
    • (2006) J. Fish Biol. , vol.69 , pp. 21-47
    • Conover, D.O.1    Clarke, L.M.2    Munch, S.B.3    Wagner, G.N.4
  • 11
    • 79959365607 scopus 로고    scopus 로고
    • Catalog of Fishes electronic version.
    • Eschmeyer, W.N. 2010. Catalog of Fishes electronic version..
    • (2010)
    • Eschmeyer, W.N.1
  • 12
    • 0032512420 scopus 로고    scopus 로고
    • Mechanism of spectral tuning in the dolphin visual pigments
    • Fasick, J.I. & Robinson, P.R. 1998. Mechanism of spectral tuning in the dolphin visual pigments. Biochemistry 37: 433-438.
    • (1998) Biochemistry , vol.37 , pp. 433-438
    • Fasick, J.I.1    Robinson, P.R.2
  • 13
    • 0344441394 scopus 로고    scopus 로고
    • Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae
    • Goetze, E. 2003. Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae. Proc. R. Soc. Lond. B Biol. Sci. 270: 2321-2331.
    • (2003) Proc. R. Soc. Lond. B Biol. Sci. , vol.270 , pp. 2321-2331
    • Goetze, E.1
  • 14
    • 0043202953 scopus 로고
    • Revision of the Eastern Pacific species of the genus Barbulifer (Pisces, Gobiidae)
    • Hoese, D.F. & Larson, H.K. 1985. Revision of the Eastern Pacific species of the genus Barbulifer (Pisces, Gobiidae). Copeia 1985: 333-339.
    • (1985) Copeia , vol.1985 , pp. 333-339
    • Hoese, D.F.1    Larson, H.K.2
  • 15
    • 0029922071 scopus 로고    scopus 로고
    • Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish in Lake Baikal
    • Hunt, D.M., Fitzgibbon, J., Slobodyanyuk, S.J. & Bowmaker, J.K. 1996. Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish in Lake Baikal. Vision Res. 36: 1217-1224.
    • (1996) Vision Res. , vol.36 , pp. 1217-1224
    • Hunt, D.M.1    Fitzgibbon, J.2    Slobodyanyuk, S.J.3    Bowmaker, J.K.4
  • 16
    • 0035745760 scopus 로고    scopus 로고
    • The molecular basis for spectral tuning of rod visual pigments in deep-sea fish
    • Hunt, D.M., Dulai, K.S., Partridge, J.C., Cottrill, P. & Bowmaker, J.K. 2001. The molecular basis for spectral tuning of rod visual pigments in deep-sea fish. J. Exp. Biol. 204: 3333-3344.
    • (2001) J. Exp. Biol. , vol.204 , pp. 3333-3344
    • Hunt, D.M.1    Dulai, K.S.2    Partridge, J.C.3    Cottrill, P.4    Bowmaker, J.K.5
  • 18
    • 79551628290 scopus 로고    scopus 로고
    • Speciation along a depth gradient in a marine adaptive radiation
    • Ingram, T. 2011. Speciation along a depth gradient in a marine adaptive radiation. Proc. R. Soc. Lond. B Biol. Sci. 278: 613-618.
    • (2011) Proc. R. Soc. Lond. B Biol. Sci. , vol.278 , pp. 613-618
    • Ingram, T.1
  • 19
    • 53349160059 scopus 로고    scopus 로고
    • In sight of speciation
    • Kirkpatrick, M. & Price, T. 2008. In sight of speciation. Nature 455: 601-602.
    • (2008) Nature , vol.455 , pp. 601-602
    • Kirkpatrick, M.1    Price, T.2
  • 20
    • 70349878538 scopus 로고    scopus 로고
    • To see in different seas: spatial variation in the rhodopsin gene of the sand goby (Pomatoschistus minutus)
    • Larmuseau, M.H.D., Raeymaekers, J.A.M., Ruddick, K.G., Van Houdt, J.K.J. & Volckaert, F.A.M. 2009. To see in different seas: spatial variation in the rhodopsin gene of the sand goby (Pomatoschistus minutus). Mol. Ecol. 18: 4227-4239.
    • (2009) Mol. Ecol. , vol.18 , pp. 4227-4239
    • Larmuseau, M.H.D.1    Raeymaekers, J.A.M.2    Ruddick, K.G.3    Van Houdt, J.K.J.4    Volckaert, F.A.M.5
  • 21
    • 77950065272 scopus 로고    scopus 로고
    • High molecular diversity in the rhodopsin gene in closely related goby fishes: a role for visual pigments in adaptive speciation?
    • Larmuseau, M.H.D., Huyse, T., Vancampenhout, K., Van Houdt, J.K.J. & Volckaert, F.A.M. 2010a. High molecular diversity in the rhodopsin gene in closely related goby fishes: a role for visual pigments in adaptive speciation? Mol. Phylogenet. Evol. 55: 689-698.
    • (2010) Mol. Phylogenet. Evol. , vol.55 , pp. 689-698
    • Larmuseau, M.H.D.1    Huyse, T.2    Vancampenhout, K.3    Van Houdt, J.K.J.4    Volckaert, F.A.M.5
  • 22
    • 77952682719 scopus 로고    scopus 로고
    • Differential modes of selection on the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus
    • Larmuseau, M.H.D., Vancampenhout, K., Raeymaekers, J.A.M., Van Houdt, J.K.J. & Volckaert, F.A.M. 2010b. Differential modes of selection on the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus. Mol. Ecol. 19: 2256-2268.
    • (2010) Mol. Ecol. , vol.19 , pp. 2256-2268
    • Larmuseau, M.H.D.1    Vancampenhout, K.2    Raeymaekers, J.A.M.3    Van Houdt, J.K.J.4    Volckaert, F.A.M.5
  • 24
    • 0001317159 scopus 로고
    • Gobiidae
    • In: (P.J.P. Whitehead, M.-L. Bauchot, J.C. Hureau, J. Nielsen & E. Tortononese, eds) - UNESCO, Paris.
    • Miller, P.J. 1986. Gobiidae. In: Fishes of the North-Eastern Atlantic and Mediterranean (P.J.P. Whitehead, M.-L. Bauchot, J.C. Hureau, J. Nielsen & E. Tortononese, eds), pp. 1019-1085. UNESCO, Paris.
    • (1986) Fishes of the North-Eastern Atlantic and Mediterranean , pp. 1019-1085
    • Miller, P.J.1
  • 25
    • 0003728605 scopus 로고    scopus 로고
    • 4th edn. John Wiley and Sons, New York.
    • Nelson, J.S. 2006. Fishes of the World, 4th edn. John Wiley and Sons, New York.
    • (2006) Fishes of the World
    • Nelson, J.S.1
  • 26
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen, R. & Yang, Z.H. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.H.2
  • 28
    • 0027086652 scopus 로고
    • Marine speciation on a small planet
    • Palumbi, S.R. 1992. Marine speciation on a small planet. Trends Ecol. Evol. 7: 114-118.
    • (1992) Trends Ecol. Evol. , vol.7 , pp. 114-118
    • Palumbi, S.R.1
  • 29
    • 0028164409 scopus 로고
    • Genetic-divergence, reproductive isolation, and marine speciation
    • Palumbi, S.R. 1994. Genetic-divergence, reproductive isolation, and marine speciation. Annu. Rev. Ecol. Syst. 25: 547-572.
    • (1994) Annu. Rev. Ecol. Syst. , vol.25 , pp. 547-572
    • Palumbi, S.R.1
  • 30
    • 0037414879 scopus 로고    scopus 로고
    • Why gobies are like hobbits
    • Palumbi, S.R. & Warner, R.R. 2003. Why gobies are like hobbits. Science 299: 51-52.
    • (2003) Science , vol.299 , pp. 51-52
    • Palumbi, S.R.1    Warner, R.R.2
  • 31
    • 70449455430 scopus 로고    scopus 로고
    • Ecological speciation in marine v. freshwater fishes
    • Puebla, O. 2011. Ecological speciation in marine v. freshwater fishes. J. Fish Biol. 75: 960-996.
    • (2011) J. Fish Biol. , vol.75 , pp. 960-996
    • Puebla, O.1
  • 32
    • 34250629722 scopus 로고    scopus 로고
    • Colour pattern as a single trait driving speciation in Hypoplectrus coral reef fishes?
    • Puebla, O., Bermingham, E., Guichard, F. & Whiteman, E. 2007. Colour pattern as a single trait driving speciation in Hypoplectrus coral reef fishes? Proc. R. Soc. Lond. B Biol. Sci. 274: 1265-1271.
    • (2007) Proc. R. Soc. Lond. B Biol. Sci. , vol.274 , pp. 1265-1271
    • Puebla, O.1    Bermingham, E.2    Guichard, F.3    Whiteman, E.4
  • 33
    • 68349134846 scopus 로고    scopus 로고
    • Elacatinus lobeli, a new cleaning goby from Belize and Honduras
    • Randall, J.E. & Colin, P.L. 2009. Elacatinus lobeli, a new cleaning goby from Belize and Honduras. Zootaxa 2173: 31-40.
    • (2009) Zootaxa , vol.2173 , pp. 31-40
    • Randall, J.E.1    Colin, P.L.2
  • 34
    • 67651071302 scopus 로고    scopus 로고
    • A literature review of the sponge-dwelling gobiid fishes of the genus Elacatinus from the western Atlantic, with description of two new Caribbean species
    • Randall, J.E. & Lobel, P.S. 2009. A literature review of the sponge-dwelling gobiid fishes of the genus Elacatinus from the western Atlantic, with description of two new Caribbean species. Zootaxa 2133: 1-19.
    • (2009) Zootaxa , vol.2133 , pp. 1-19
    • Randall, J.E.1    Lobel, P.S.2
  • 36
    • 0042697498 scopus 로고    scopus 로고
    • Rapid speciation and ecological divergence in the American seven-spined gobies (Gobiidae, Gobiosomatini) inferred from a molecular phylogeny
    • Rüber, L., Van Tassell, J.L. & Zardoya, R. 2003. Rapid speciation and ecological divergence in the American seven-spined gobies (Gobiidae, Gobiosomatini) inferred from a molecular phylogeny. Evolution 57: 1584-1598.
    • (2003) Evolution , vol.57 , pp. 1584-1598
    • Rüber, L.1    Van Tassell, J.L.2    Zardoya, R.3
  • 37
    • 2942529169 scopus 로고    scopus 로고
    • Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp
    • Schroth, W., Jarms, G., Streit, B. & Schierwater, B. 2002. Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp. BMC Evol. Biol. 2: 1.
    • (2002) BMC Evol. Biol. , vol.2 , pp. 1
    • Schroth, W.1    Jarms, G.2    Streit, B.3    Schierwater, B.4
  • 39
    • 77954073378 scopus 로고    scopus 로고
    • Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth
    • Sivasundar, A. & Palumbi, S.R. 2010. Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth. J. Evol. Biol. 23: 1159-1169.
    • (2010) J. Evol. Biol. , vol.23 , pp. 1159-1169
    • Sivasundar, A.1    Palumbi, S.R.2
  • 41
    • 17244374513 scopus 로고    scopus 로고
    • Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi
    • Sugawara, T., Terai, Y., Imai, H., Turner, G.F., Koblmüller, S., Sturmbauer, C. et al. 2005. Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi. Proc. Natl Acad. Sci. USA 102: 5448-5453.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 5448-5453
    • Sugawara, T.1    Terai, Y.2    Imai, H.3    Turner, G.F.4    Koblmüller, S.5    Sturmbauer, C.6
  • 42
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 43
    • 14844349438 scopus 로고    scopus 로고
    • Marine radiations at small geographic scales: speciation in neotropical reef gobies (Elacatinus)
    • Taylor, M.S. & Hellberg, M.E. 2005. Marine radiations at small geographic scales: speciation in neotropical reef gobies (Elacatinus). Evolution 59: 374-385.
    • (2005) Evolution , vol.59 , pp. 374-385
    • Taylor, M.S.1    Hellberg, M.E.2
  • 44
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang, Z.H. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.H.1
  • 45
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang, Z.H. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15: 568-573.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
    • Yang, Z.H.1
  • 46
    • 0033692959 scopus 로고    scopus 로고
    • Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A
    • Yang, Z.H. 2000. Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A. J. Mol. Evol. 51: 423-432.
    • (2000) J. Mol. Evol. , vol.51 , pp. 423-432
    • Yang, Z.H.1
  • 47
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang, Z.H. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.H.1
  • 48
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z.H., Nielsen, R., Goldman, N. & Pedersen, A.-M. 2000a. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.H.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.-M.4
  • 49
    • 0033800170 scopus 로고    scopus 로고
    • Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites
    • Yang, Z.H., Swanson, W.J. & Vacquier, V.D. 2000b. Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites. Mol. Biol. Evol. 17: 1446-1455.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1446-1455
    • Yang, Z.H.1    Swanson, W.J.2    Vacquier, V.D.3
  • 50
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang, Z.H., Wong, W.S.W. & Nielsen, R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1107-1118
    • Yang, Z.H.1    Wong, W.S.W.2    Nielsen, R.3
  • 51
    • 0034002482 scopus 로고    scopus 로고
    • Molecular evolution of vertebrate visual pigments
    • Yokoyama, S. 2000. Molecular evolution of vertebrate visual pigments. Prog. Retin. Eye Res. 19: 385-419.
    • (2000) Prog. Retin. Eye Res. , vol.19 , pp. 385-419
    • Yokoyama, S.1
  • 52
    • 6344268959 scopus 로고    scopus 로고
    • The molecular basis of adaptive evolution of squirrelfish rhodopsins
    • Yokoyama, S. & Takenaka, N. 2004. The molecular basis of adaptive evolution of squirrelfish rhodopsins. Mol. Biol. Evol. 21: 2071-2078.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 2071-2078
    • Yokoyama, S.1    Takenaka, N.2
  • 53
    • 0028953871 scopus 로고
    • Rhodopsin from the fish, Astyanax- Role of tyrosine-261 in the red shift
    • Yokoyama, R., Knox, B.E. & Yokoyama, S. 1995. Rhodopsin from the fish, Astyanax- Role of tyrosine-261 in the red shift. Invest. Ophthalmol. Vis. Sci. 36: 939-945.
    • (1995) Invest. Ophthalmol. Vis. Sci. , vol.36 , pp. 939-945
    • Yokoyama, R.1    Knox, B.E.2    Yokoyama, S.3
  • 54
    • 34247237235 scopus 로고    scopus 로고
    • Modulation of the absorption maximum of rhodopsin by amino acids in the C-terminus
    • Yokoyama, S., Tada, T. & Yamato, T. 2007. Modulation of the absorption maximum of rhodopsin by amino acids in the C-terminus. Photochem. Photobiol. 83: 236-241.
    • (2007) Photochem. Photobiol. , vol.83 , pp. 236-241
    • Yokoyama, S.1    Tada, T.2    Yamato, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.