Resequencing DCDC5 in the flanking region of an LD-SNP derived from a Kidney-yang deficiency syndrome family

Evidence-based Complementary and Alternative Medicine

Volumn 2011, Issue , 2011, Pages

  Ding, Wei Jun ^a   Zhou, Li Ping ^a   Liu, Wei Wei ^a   Zhang, Tian E ^a   Li, Wei Hong ^a   Tan, Ling Ling ^a   Li, Wan Zhen ^a   Qin, Yu Hua ^a   Yang, Hong Ya ^a   Duan, Azure ^a   Wang, Mi Qu ^a  

^a CHENGDU UNIVERSITY OF TRADITIONAL CHINESE MEDICINE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINE; DOUBLECORTIN; DOUBLECORTIN DOMAIN CONTAINING 5; GENOMIC DNA; GUANINE; LEUCINE TRANSFER RNA; LEUCINE TRANSFER RNA SYNTHETASE; PROLINE; UNCLASSIFIED DRUG;

ARTICLE; CLINICAL ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; DNA FLANKING REGION; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENE LOCATION; GENE SEQUENCE; GENETIC TRAIT; GENETIC VARIABILITY; GENOTYPE; HUMAN; KIDNEY DISEASE; KIDNEY YANG DEFICIENCY SYNDROME; MALE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SUBSTITUTION REACTION;

EID: 79959267838     PISSN: 1741427X     EISSN: 17414288     Source Type: Journal    
DOI: 10.1155/2011/215653     Document Type: Article

References (27)

1. Wang J. G., Pan L., Wu B., Wang M., Familial characteristics of kidney-yang deficiency and cold syndrome Journal of Toxicology and Environmental HealthPart A 2006 69 21 1939 1950 (Pubitemid 44423272)
2. Pan L., Wang M., Wang J. G., Wu B., Hui K. M., Clinical and molecular evaluation of warming and tonic herb treatment for sibling patients of a typical kidney-yang deficiency family American Journal of Chinese Medicine 2006 34 3 387 400 (Pubitemid 43740975)
3. Yang L., Wang M., Wu W., Zhang L., Transcriptome analysis of cold syndrome using microarray American Journal of Chinese Medicine 2007 35 4 609 620 (Pubitemid 47307699)
4. Wu B., Wang M., Wang J. G., Pan L., Hui K. M., Establishment of a discriminant mathematical model for diagnosis of deficiency-cold syndrome using gene expression profiling Journal of Alternative and Complementary Medicine 2006 12 8 751 761 (Pubitemid 44934089)
5. Dapprich J., Ferriola D., Magira E. E., Kunkel M., Monos D., SNP-specific extraction of haplotype-resolved targeted genomic regions Nucleic Acids Research 2008 36 15, article e94
6. Smyth D. J., Plagnol V., Walker N. M., Cooper J. D., Downes K., Yang J. H. M., Howson J. M. M., Stevens H., McManus R., Wijmenga C., Heap G. A., Dubois P. C., Clayton D. G., Hunt K. A., Van Heel D. A., Todd J. A., Shared and distinct genetic variants in type 1 diabetes and celiac disease The New England Journal of Medicine 2008 359 26 2767 2777
7. Wermter A. K., Reichwald K., Bch T., Geller F., Platzer C., Huse K., Hess C., Remschmidt H., Gudermann T., Preibisch G., Siegfried W., Goldschmidt H. P., Li W. D., Price R. A., Biebermann H., Krude H., Vollmert C., Wichmann H. E., Illig T., Srensen T. I. A., Astrup A., Larsen L. H., Pedersen O., Eberl D., Clment K., Blundell J., Wabitsch M., Schfer H., Platzer M., Hinney A., Hebebrand J., Mutation analysis of the MCHR1 gene in human obesity European Journal of Endocrinology 2005 152 6 851 862 (Pubitemid 40903575)
8. Ding W. J., Zeng Y. Z., Li W. H., Zhang T. E., Liu W. W., Teng X. K., Ma Y. X., Yan S. L., Wan J. M. F., Wang M. Q., Identification of linkage disequilibrium SNPs from a Kidney-yang deficiency syndrome pedigree American Journal of Chinese Medicine 2009 37 3 427 438
9. Ding W. J., Yan S. L., Zeng Y. Z., Duan A., Zheng T. E., Liu M., Tan C. E., Teng X., Wan J., Insufficient activity of MAPK pathway is a key monitor of Kidney-Yang Deficiency Syndrome Journal of Alternative and Complementary Medicine 2009 15 6 653 660
10. Horne B. D., Carlquist J. F., Cannon-Albright L. A., Muhlestein J. B., McKinney J. T., Kolek M. J., Clarke J. L., Anderson J. L., Camp N. J., High-resolution characterization of linkage disequilibrium structure and selection of tagging single nucleotide polymorphisms: application to the cholesteryl ester transfer protein gene Annals of Human Genetics 2006 70 4 524 534 (Pubitemid 43797358)
11. Middeldorp A., Jagmohan-Changur S., Helmer Q., Van der Klift H. M., Tops C. M. J., Vasen H. F. A., Devilee P., Morreau H., Houwing-Duistermaat J. J., Wijnen J. T., Van Wezel T., A procedure for the detection of linkage with high density SNP arrays in a large pedigree with colorectal cancer BMC Cancer 2007 7, article 6
12. Reiner O., Coquelle F. M., Peter B., Levy T., Kaplan A., Sapir T., Orr I., Barkai N., Eichele G., Bergmann S., The evolving doublecortin (DCX) superfamily BMC Genomics 2006 7, article 188
13. Nagase T., Kikuno R., Ishikawa K. I., Hirosawa M., Ohara O., Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro DNA Research 2000 7 2 143 150
14. Hoggart C. J., Whittaker J. C., De Iorio M., Balding D. J., Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies PLoS Genetics 2008 4 7
15. Weimer J. M., Anton E. S., Doubling up on microtubule stabilizers: synergistic functions of doublecortin-like kinase and doublecortin in the developing cerebral cortex Neuron 2006 49 1 3 4 (Pubitemid 43017178)
16. Liu Y., Chirino A. J., Misulovin Z., Leteux C., Feizi T., Nussenzweig M. C., Bjorkman P. J., Crystal structure of the cysteine-rich domain of mannose receptor complexed with a sulfated carbohydrate ligand Journal of Experimental Medicine 2000 191 7 1105 1115 (Pubitemid 30207674)
17. Liu Q., Zhou J., Daiger S. P., Farber D. B., Heckenlively J. R., Smith J. E., SulliVan L. S., Zuo J., Milam A. H., Pierce E. A., Identification and subcellular localization of the RP1 protein in human and mouse photoreceptors Investigative Ophthalmology and Visual Science 2002 43 1 22 32 (Pubitemid 34032436)
18. Seiradake E., Mao W., Hernandez V., Baker S. J., Plattner J. J., Alley M. R. K., Cusack S., Crystal structures of the human and fungal cytosolic Leucyl-tRNA synthetase editing domains: a structural basis for the rational design of antifungal benzoxaboroles Journal of Molecular Biology 2009 390 2 196 207
19. Lue S. W., Kelley S. O., A single residue in leucyl-tRNA synthetase affecting amino acid specificity and tRNA aminoacylation Biochemistry 2007 46 15 4466 4472 (Pubitemid 46625506)
20. Ingman M., Gyllensten U., SNP frequency estimation using massively parallel sequencing of pooled DNA European Journal of Human Genetics 2009 17 3 383 386
21. Peters E. J., Slager S. L., Jenkins G. D., Reinalda M. S., Garriock H. A., Shyn S. I., Kraft J. B., McGrath P. J., Hamilton S. P., Resequencing of serotonin-related genes and association of tagging SNPs to citalopram response Pharmacogenetics and Genomics 2009 19 1 1 10
22. Tarpey P. S., Smith R., Pleasance E., Whibley A., Edkins S., Hardy C., O'Meara S., Latimer C., Dicks E., Menzies A., Stephens P., Blow M., Greenman C., Xue Y., Tyler-Smith C., Thompson D., Gray K., Andrews J., Barthorpe S., Buck G., Cole J., Dunmore R., Jones D., Maddison M., Mironenko T., Turner R., Turrell K., Varian J., West S., Widaa S., Wray P., Teague J., Butler A., Jenkinson A., Jia M., Richardson D., Shepherd R., Wooster R., Tejada M. I., Martinez F., Carvill G., Goliath R., De Brouwer A. P. M., Van Bokhoven H., Van Esch H., Chelly J., Raynaud M., Ropers H. H., Abidi F. E., Srivastava A. K., Cox J., Luo Y., Mallya U., Moon J., Parnau J., Mohammed S., Tolmie J. L., Shoubridge C., Corbett M., Gardner A., Haan E., Rujirabanjerd S., Shaw M., Vandeleur L., Fullston T., Easton D. F., Boyle J., Partington M., Hackett A., Field M., Skinner C., Stevenson R. E., Bobrow M., Turner G., Schwartz C. E., Gecz J., Raymond F. L., Futreal P. A., Stratton M. R., A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation Nature Genetics 2009 41 5 535 543
23. Tocharoentanaphol C., Promso S., Zelenika D., Lowhnoo T., Tongsima S., Sura T., Chantratita W., Matsuda F., Mooney S., Sakuntabhai A., Evaluation of resequencing on number of tag SNPs of 13 atherosclerosis- related genes in Thai population Journal of Human Genetics 2008 53 1 74 86
24. Wang M. Q., Wu B., Feng R., An investigation report on the cold syndrome family Journal of Integrated TCM and Western Medicine 2003 12 22 2385 2386
25. Kim H. J., Hwang S. Y., Kim J. H., Park H. J., Lee S. G., Lee S. W., Joo J. C., Kim Y. K., Association between genetic polymorphism of multidrug resistance 1 gene and sasang constitutions Evidence-Based Complementary and Alternative Medicine 2009 6 1 73 80
26. Lampronti I., Khan M. T. H., Borgatti M., Bianchi N., Gambari R., Inhibitory effects of Bangladeshi medicinal plant extracts on interactions between transcription factors and target DNA sequences Evidence-Based Complementary and Alternative Medicine 2008 5 3 303 312
27. Nagashima K., Yoda T., Yagishita T., Taniguchi A., Hosono T., Kanosue K., Thermal regulation and comfort during a mild-cold exposure in young Japanese women complaining of unusual coldness Journal of Applied Physiology 2002 92 3 1029 1035 (Pubitemid 34670957)