-
1
-
-
0003030232
-
Transfer RNAs and aminoacyl-tRNA synthetases
-
CRC Press, Boca Raton, FL
-
Lapointe, J., and Giegé, R. (1991) Transfer RNAs and aminoacyl-tRNA synthetases, Translation in Eukaryotes, CRC Press, Boca Raton, FL.
-
(1991)
Translation in Eukaryotes
-
-
Lapointe, J.1
Giegé, R.2
-
2
-
-
0035788034
-
Formation of two classes of tRNA synthetases in relation to editing functions and genetic code
-
Ribas de Pouplana, L., and Schimmel, P. (2001) Formation of two classes of tRNA synthetases in relation to editing functions and genetic code, Cold Spring Harbor Symp. Quantum Biol. 66, 161-166.
-
(2001)
Cold Spring Harbor Symp. Quantum Biol
, vol.66
, pp. 161-166
-
-
Ribas de Pouplana, L.1
Schimmel, P.2
-
3
-
-
0033782994
-
Aminoacyl-tRNA synthesis
-
Ibba, M., and Söll, D. (2000) Aminoacyl-tRNA synthesis, Annu. Rev. Biochem. 69, 617-650.
-
(2000)
Annu. Rev. Biochem
, vol.69
, pp. 617-650
-
-
Ibba, M.1
Söll, D.2
-
4
-
-
0017326738
-
Editing mechanisms in protein synthesis. Rejection of valine by isoleucyl-tRNA synthetase
-
Fersht, A. R. (1977) Editing mechanisms in protein synthesis. Rejection of valine by isoleucyl-tRNA synthetase, Biochemistry 16, 1025-1030.
-
(1977)
Biochemistry
, vol.16
, pp. 1025-1030
-
-
Fersht, A.R.1
-
5
-
-
0032562707
-
Sieves in sequence
-
Fersht, A. R. (1998) Sieves in sequence, Science 280, 541.
-
(1998)
Science
, vol.280
, pp. 541
-
-
Fersht, A.R.1
-
6
-
-
0035917804
-
Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway
-
Döring, V., Mootz, H. D., Nangle, L. A., Hendrickson, T. L., de Crecy-Lagard, V., Schimmel, P., and Marliére, P. (2001) Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway, Science 292, 501-504.
-
(2001)
Science
, vol.292
, pp. 501-504
-
-
Döring, V.1
Mootz, H.D.2
Nangle, L.A.3
Hendrickson, T.L.4
de Crecy-Lagard, V.5
Schimmel, P.6
Marliére, P.7
-
7
-
-
0036190516
-
Mutational separation of two pathways for editing by a class I tRNA synthetase
-
Hendrickson, T. L., Nomanbhoy, T. K., de Crecy-Lagard, V., Fukai, S., Nureki, O., and Schimmel, P. (2002) Mutational separation of two pathways for editing by a class I tRNA synthetase, Mol. Cell 9, 353-362.
-
(2002)
Mol. Cell
, vol.9
, pp. 353-362
-
-
Hendrickson, T.L.1
Nomanbhoy, T.K.2
de Crecy-Lagard, V.3
Fukai, S.4
Nureki, O.5
Schimmel, P.6
-
8
-
-
1942471991
-
Groups on the side chain of T252 in Escherichia coli leucyl-tRNA synthetase are important for discrimination of amino acids and cell viability
-
Xu, M. G., Li, J., Du, X., and Wang, E. D. (2004) Groups on the side chain of T252 in Escherichia coli leucyl-tRNA synthetase are important for discrimination of amino acids and cell viability, Biochem. Biophys. Res. Commun. 318, 11-16.
-
(2004)
Biochem. Biophys. Res. Commun
, vol.318
, pp. 11-16
-
-
Xu, M.G.1
Li, J.2
Du, X.3
Wang, E.D.4
-
9
-
-
2342431929
-
Transfer RNA-dependent amino acid discrimination by aminoacyl-tRNA synthetases
-
Lapointe, J, and Brakier-Gingras, L, Eds, pp, Kluwer Academic/Plenum Publishers, New York
-
Hendrickson, T. L., and Schimmel, P. (2003) Transfer RNA-dependent amino acid discrimination by aminoacyl-tRNA synthetases, in Translation Mechanisms (Lapointe, J., and Brakier-Gingras, L., Eds.) pp 34-64, Kluwer Academic/Plenum Publishers, New York.
-
(2003)
Translation Mechanisms
, pp. 34-64
-
-
Hendrickson, T.L.1
Schimmel, P.2
-
10
-
-
0027081335
-
Intron locations and functional deletions in relation to the design and evolution of a subgroup of class I tRNA synthetases
-
Schimmel, P., Shepard, A., and Shiba, K. (1992) Intron locations and functional deletions in relation to the design and evolution of a subgroup of class I tRNA synthetases, Protein Sci. 1, 1387-1391.
-
(1992)
Protein Sci
, vol.1
, pp. 1387-1391
-
-
Schimmel, P.1
Shepard, A.2
Shiba, K.3
-
11
-
-
0034682566
-
Errors from selective disruption of the editing center in a tRNA synthetase
-
Hendrickson, T. L., Nomanbhoy, T. K., and Schimmel, P. (2000) Errors from selective disruption of the editing center in a tRNA synthetase, Biochemistry 39, 8180-8186.
-
(2000)
Biochemistry
, vol.39
, pp. 8180-8186
-
-
Hendrickson, T.L.1
Nomanbhoy, T.K.2
Schimmel, P.3
-
12
-
-
0032562571
-
Enzyme structure with two catalytic sites for double-sieve selection of substrate
-
Nureki, O., Vassylyev, D. G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Hendrickson, T. L., Schimmel, P., and Yokoyama, S. (1998) Enzyme structure with two catalytic sites for double-sieve selection of substrate, Science 280, 578-582.
-
(1998)
Science
, vol.280
, pp. 578-582
-
-
Nureki, O.1
Vassylyev, D.G.2
Tateno, M.3
Shimada, A.4
Nakama, T.5
Fukai, S.6
Konno, M.7
Hendrickson, T.L.8
Schimmel, P.9
Yokoyama, S.10
-
13
-
-
0029130510
-
Residues in a class I tRNA synthetase which determine selectivity of amino acid recognition in the context of tRNA
-
Schmidt, E., and Schimmel, P. (1995) Residues in a class I tRNA synthetase which determine selectivity of amino acid recognition in the context of tRNA, Biochemistry 34, 11204-11210.
-
(1995)
Biochemistry
, vol.34
, pp. 11204-11210
-
-
Schmidt, E.1
Schimmel, P.2
-
14
-
-
0029867730
-
Mutational analysis suggests the same design for editing activities of two tRNA synthetases
-
Lin, L., and Schimmel, P. (1996) Mutational analysis suggests the same design for editing activities of two tRNA synthetases, Biochemistry 35, 5596-5601.
-
(1996)
Biochemistry
, vol.35
, pp. 5596-5601
-
-
Lin, L.1
Schimmel, P.2
-
15
-
-
0034612210
-
CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function
-
Chen, J. F., Guo, N. N., Li, T., Wang, E. D., and Wang, Y. L. (2000) CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function, Biochemistry 39, 6726-6731.
-
(2000)
Biochemistry
, vol.39
, pp. 6726-6731
-
-
Chen, J.F.1
Guo, N.N.2
Li, T.3
Wang, E.D.4
Wang, Y.L.5
-
17
-
-
0037178055
-
Rational design to block amino acid editing of a tRNA synthetase
-
Mursinna, R. A., and Martinis, S. A. (2002) Rational design to block amino acid editing of a tRNA synthetase, J. Am. Chem. Soc. 124, 7286-7287.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 7286-7287
-
-
Mursinna, R.A.1
Martinis, S.A.2
-
18
-
-
0346096859
-
Molecular dissection of a critical specificity determinant within the amino acid editing domain leucyl-tRNA synthetase
-
Mursinna, R. A., Lee, K. W., Briggs, J. M., and Martinis, S. A. (2004) Molecular dissection of a critical specificity determinant within the amino acid editing domain leucyl-tRNA synthetase, Biochemistry 43, 155-165.
-
(2004)
Biochemistry
, vol.43
, pp. 155-165
-
-
Mursinna, R.A.1
Lee, K.W.2
Briggs, J.M.3
Martinis, S.A.4
-
19
-
-
0037961667
-
Structural and mechanistic basis of pre- and post-transfer editing by a leucyl-tRNA synthetase
-
Lincecum, T. L., Jr, Tukalo, M., Yaremchuk, A., Sproat, B. S., Eynde, W. V. D., Link, A., Calenbergh, S. V., Grotli, M., Martinis, S. A., and Cusack, S. (2003) Structural and mechanistic basis of pre- and post-transfer editing by a leucyl-tRNA synthetase, Mol. Cell 11, 951-963.
-
(2003)
Mol. Cell
, vol.11
, pp. 951-963
-
-
Lincecum Jr, T.L.1
Tukalo, M.2
Yaremchuk, A.3
Sproat, B.S.4
Eynde, W.V.D.5
Link, A.6
Calenbergh, S.V.7
Grotli, M.8
Martinis, S.A.9
Cusack, S.10
-
20
-
-
0037183472
-
Attenuation of editing activity of the Escherichia coli leucyl-tRNA synthetase allows incorporation of novel amino acids into proteins in vivo
-
Tang, Y., and Tirrell, D. A. (2002) Attenuation of editing activity of the Escherichia coli leucyl-tRNA synthetase allows incorporation of novel amino acids into proteins in vivo, Biochemistry 41, 10635-10641.
-
(2002)
Biochemistry
, vol.41
, pp. 10635-10641
-
-
Tang, Y.1
Tirrell, D.A.2
-
21
-
-
28244498723
-
Two conserved threonines collaborate in the Escherichia coli leucyl-tRNA synthetase amino acid editing mechanism
-
Zhai, Y., and Martinis, S. A. (2005) Two conserved threonines collaborate in the Escherichia coli leucyl-tRNA synthetase amino acid editing mechanism, Biochemistry 44, 15437-15443.
-
(2005)
Biochemistry
, vol.44
, pp. 15437-15443
-
-
Zhai, Y.1
Martinis, S.A.2
-
22
-
-
33644748247
-
Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination
-
Liu, Y., Liao, J., Zhu, B., Wang, E. D., and Ding, J. (2006) Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination, Biochem. J. 394, 399-407.
-
(2006)
Biochem. J
, vol.394
, pp. 399-407
-
-
Liu, Y.1
Liao, J.2
Zhu, B.3
Wang, E.D.4
Ding, J.5
-
23
-
-
0037449126
-
Towards understanding human mitochondrial leucine aminoacylation identity
-
Sohm, B., Frugier, M., Brulé, H., Olszak, K., Przykorska, A., and Florentz, C. (2003) Towards understanding human mitochondrial leucine aminoacylation identity, J. Mol. Biol. 328, 995-1010.
-
(2003)
J. Mol. Biol
, vol.328
, pp. 995-1010
-
-
Sohm, B.1
Frugier, M.2
Brulé, H.3
Olszak, K.4
Przykorska, A.5
Florentz, C.6
-
25
-
-
0035861685
-
Dual mode recognition of two isoacceptor tRNAs by mammalian mitochondrial seryl-tRNA synthetase
-
Shimada, N., Suzuki, T., and Wantanabe, K. (2001) Dual mode recognition of two isoacceptor tRNAs by mammalian mitochondrial seryl-tRNA synthetase, J. Biol. Chem. 276, 46770-46778.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 46770-46778
-
-
Shimada, N.1
Suzuki, T.2
Wantanabe, K.3
-
26
-
-
1342308088
-
Functional idiosyncrasies of tRNA isoacceptors in cognate and noncognate aminoacylation systems
-
Fender, A., Sissler, M., Florentz, C., and Giege, R. (2004) Functional idiosyncrasies of tRNA isoacceptors in cognate and noncognate aminoacylation systems, Biochimie 86, 21-29.
-
(2004)
Biochimie
, vol.86
, pp. 21-29
-
-
Fender, A.1
Sissler, M.2
Florentz, C.3
Giege, R.4
-
27
-
-
0035793701
-
How methionyl-tRNA synthetase creates its amino acid recognition pocket upon L-methionine binding
-
Serre, L., Verndon, G., Choinowski, T., Hervouet, N., Risler, J. L., and Zelwer, C. (2001) How methionyl-tRNA synthetase creates its amino acid recognition pocket upon L-methionine binding, J. Mol. Biol. 306, 863-876.
-
(2001)
J. Mol. Biol
, vol.306
, pp. 863-876
-
-
Serre, L.1
Verndon, G.2
Choinowski, T.3
Hervouet, N.4
Risler, J.L.5
Zelwer, C.6
-
28
-
-
0037013921
-
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
-
Newberry, K., Hou, Y. M., and Perona, J. J. (2002) Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase, EMBO J. 21, 2778-2787.
-
(2002)
EMBO J
, vol.21
, pp. 2778-2787
-
-
Newberry, K.1
Hou, Y.M.2
Perona, J.J.3
-
29
-
-
0034332436
-
tRNA aminoacylation by arginyl-tRNA synthetase: Induced conformations during substrate binding
-
Delagoutte, b., Moras, D., and Cavarelli, J. (2000) tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrate binding, EMBO J. 19, 5599-5610.
-
(2000)
EMBO J
, vol.19
, pp. 5599-5610
-
-
Delagoutte, B.1
Moras, D.2
Cavarelli, J.3
-
30
-
-
0037099498
-
Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition
-
Yaremchuk, A., Kriklivyi, I., Tukalo, M., and Cusack, S. (2002) Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition, EMBO J. 21, 3829-3840.
-
(2002)
EMBO J
, vol.21
, pp. 3829-3840
-
-
Yaremchuk, A.1
Kriklivyi, I.2
Tukalo, M.3
Cusack, S.4
-
31
-
-
0033622155
-
2.9A crystal structure of ligand-free tryptophanyl-tRNA synthetase: Domain movements fragment the adenine nucleotide binding site
-
Ilyin, V. A., Temple, B., Hu, M., Li, G., Yin, Y., Vachette, P., and Carter, C. W. J. (2000) 2.9A crystal structure of ligand-free tryptophanyl-tRNA synthetase: domain movements fragment the adenine nucleotide binding site, Protein Sci. 9, 218-231.
-
(2000)
Protein Sci
, vol.9
, pp. 218-231
-
-
Ilyin, V.A.1
Temple, B.2
Hu, M.3
Li, G.4
Yin, Y.5
Vachette, P.6
Carter, C.W.J.7
-
32
-
-
0034657687
-
The 2A crystal structure of leucyl-tRNA synthetase and its complex with a leucyladenylate analogue
-
Cusack, S., Yaremchuk, A., and Tukalo, M. (2000) The 2A crystal structure of leucyl-tRNA synthetase and its complex with a leucyladenylate analogue, EMBO J. 19, 2351-2361.
-
(2000)
EMBO J
, vol.19
, pp. 2351-2361
-
-
Cusack, S.1
Yaremchuk, A.2
Tukalo, M.3
-
33
-
-
32344451863
-
Free-energy simulations and experiments reveal long-range electrostatic interactions and substrate-assisted specificity in an aminoacyl-tRNA synthetase
-
Thompson, D., Plateau, P., and Simonson, T. (2006) Free-energy simulations and experiments reveal long-range electrostatic interactions and substrate-assisted specificity in an aminoacyl-tRNA synthetase, ChemBioChem 7, 337-344.
-
(2006)
ChemBioChem
, vol.7
, pp. 337-344
-
-
Thompson, D.1
Plateau, P.2
Simonson, T.3
-
34
-
-
0141653988
-
Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase
-
Zhang, C.-M., Perona, J. J., and Hou, Y. M. (2003) Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase, Biochemistry 42, 10931-10937.
-
(2003)
Biochemistry
, vol.42
, pp. 10931-10937
-
-
Zhang, C.-M.1
Perona, J.J.2
Hou, Y.M.3
-
35
-
-
0036312082
-
Dimerization of a pathogenic human mitochondrial tRNA
-
Wittenhagen, L. W., and Kelley, S. O. (2002) Dimerization of a pathogenic human mitochondrial tRNA, Nat. Struct. Biol. 9, 586-590.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 586-590
-
-
Wittenhagen, L.W.1
Kelley, S.O.2
-
36
-
-
0033951476
-
Expression and characterization of the human mitochondrial leucyl-tRNA synthetase
-
Bullard, J. M., Cai, Y. C., and Spremulli, L. L. (2000) Expression and characterization of the human mitochondrial leucyl-tRNA synthetase, Biochim. Biophys. Acta 1490, 245-258.
-
(2000)
Biochim. Biophys. Acta
, vol.1490
, pp. 245-258
-
-
Bullard, J.M.1
Cai, Y.C.2
Spremulli, L.L.3
-
37
-
-
0016437581
-
Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases
-
Fersht, A. R., Ashford, J. S., Bruton, C. J., Jakes, R., Koch, G. L. E., and Hartley, B. S. (1975) Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases, Biochemistry 14, 1-4.
-
(1975)
Biochemistry
, vol.14
, pp. 1-4
-
-
Fersht, A.R.1
Ashford, J.S.2
Bruton, C.J.3
Jakes, R.4
Koch, G.L.E.5
Hartley, B.S.6
-
38
-
-
14344250347
-
An aminoacyl-tRNA synthetase with a defunct editing site
-
Lue, S. W., and Kelley, S. O. (2005) An aminoacyl-tRNA synthetase with a defunct editing site, Biochemistry 44, 3010-3016.
-
(2005)
Biochemistry
, vol.44
, pp. 3010-3016
-
-
Lue, S.W.1
Kelley, S.O.2
-
40
-
-
0030962189
-
Structural and functional considerations of the aminoacylation reaction
-
Arnez, J. G., and Moras, D. (1997) Structural and functional considerations of the aminoacylation reaction, Trends Biochem. Sci. 22, 211-216.
-
(1997)
Trends Biochem. Sci
, vol.22
, pp. 211-216
-
-
Arnez, J.G.1
Moras, D.2
-
42
-
-
0035119935
-
Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase
-
Sekine, S., Nureki, O., Shimada, A., Vassylyev, D. G., and Yokoyama, S. (2001) Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase, Nat. Struct. Biol. 8, 203-206.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 203-206
-
-
Sekine, S.1
Nureki, O.2
Shimada, A.3
Vassylyev, D.G.4
Yokoyama, S.5
-
43
-
-
33744947970
-
Active-site assembly in glutaminyl-tRNA synthetase by tRNA-mediated induced fit
-
Uter, N. T., and Perona, J. J. (2006) Active-site assembly in glutaminyl-tRNA synthetase by tRNA-mediated induced fit, Biochemistry 45, 6858-6865.
-
(2006)
Biochemistry
, vol.45
, pp. 6858-6865
-
-
Uter, N.T.1
Perona, J.J.2
-
44
-
-
0038662765
-
tRNA-dependent active site assembly in a class I aminoacyl-tRNA synthetase
-
Sherlin, L. D., and Perona, J. J. (2003) tRNA-dependent active site assembly in a class I aminoacyl-tRNA synthetase, Structure 11, 591-603.
-
(2003)
Structure
, vol.11
, pp. 591-603
-
-
Sherlin, L.D.1
Perona, J.J.2
-
45
-
-
0031906815
-
The importance of tRNA backbone-mediated interactions with synthetase for aminoacylation
-
McClain, W. H., Schneider, J., Bhattacharya, S., and Gabriel, K. (1998) The importance of tRNA backbone-mediated interactions with synthetase for aminoacylation, Proc. Natl. Acad. Sci. U.S.A. 95, 460-465.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 460-465
-
-
McClain, W.H.1
Schneider, J.2
Bhattacharya, S.3
Gabriel, K.4
-
46
-
-
0027165755
-
Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase
-
Perona, J. J., Rould, M. A., and Steitz, T. A. (1993) Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase, Biochemistry 32, 8758-8771.
-
(1993)
Biochemistry
, vol.32
, pp. 8758-8771
-
-
Perona, J.J.1
Rould, M.A.2
Steitz, T.A.3
-
47
-
-
0027497871
-
-
de Prat, Gay, G., Duckworth, H. W., and Fersht, A. R. (1993) Modification of the amino acid specificity of tyrosyl-tRNA synthetase by protein engineering, FEBS Lett. 318, 167-171.
-
de Prat, Gay, G., Duckworth, H. W., and Fersht, A. R. (1993) Modification of the amino acid specificity of tyrosyl-tRNA synthetase by protein engineering, FEBS Lett. 318, 167-171.
-
-
-
-
48
-
-
0030033267
-
Aminoacyl-tRNA synthetases optimize both cognate tRNA recognition and discrimination against noncognate tRNAs
-
Sherman, J. M., and Söll, D. (1996) Aminoacyl-tRNA synthetases optimize both cognate tRNA recognition and discrimination against noncognate tRNAs, Biochemistry 35, 601-607.
-
(1996)
Biochemistry
, vol.35
, pp. 601-607
-
-
Sherman, J.M.1
Söll, D.2
-
50
-
-
0027269812
-
Use of binding energy in catalysis: Optimization of rate in a multistep reaction
-
Avis, J. M., and Fersht, A. R. (1993) Use of binding energy in catalysis: Optimization of rate in a multistep reaction, Biochemistry 32, 5321-5326.
-
(1993)
Biochemistry
, vol.32
, pp. 5321-5326
-
-
Avis, J.M.1
Fersht, A.R.2
|