Quantitative metrics of overlaps in Grinnellian niches: Advances and possible drawbacks

Global Ecology and Biogeography

Volumn 20, Issue 6, 2011, Pages 915-927

  Rodder D ^a,b   Engler, J O ^a,b  

^a UNIVERSITY OF TRIER   (Germany)

^b ZOOLOGISCHES FORSCHUNGSMUSEUM ALEXANDER KOENIG   (Germany)

Author keywords

Environmental space; Geographic space; Niche conservatism; Niche evolution; Niche shift; North America; Salamanders; Simulated environment; Simulated species; Species distribution model

Indexed keywords

AMPHIBIAN; COMPUTER SIMULATION; DISCRIMINANT ANALYSIS; ECOLOGICAL MODELING; ERROR ANALYSIS; GEOGRAPHICAL REGION; NICHE OVERLAP; PERFORMANCE ASSESSMENT; PRINCIPAL COMPONENT ANALYSIS; QUANTITATIVE ANALYSIS; RANGE SIZE;

NORTH AMERICA;

GRINNELLIA; PLETHODONTIDAE; SALAMANDROIDEA;

EID: 79958765292     PISSN: 1466822X     EISSN: 14668238     Source Type: Journal    
DOI: 10.1111/j.1466-8238.2011.00659.x     Document Type: Article

References (65)

1. Anderson, R.P. & Raza, A. (2010) The effect of the extent of the study region on GIS models of species geographic distribution and estimates of niche evolution: preliminary tests with montane rodents (genus Nephelomys) in Venezuela. Journal of Biogeography, 37, 1378-1393.
2. Araújo, M.B. & New, M. (2007) Ensemble forecasting of species distributions. Trends in Ecology and Evolution, 22, 42-47.
3. Beyer, H.L. (2004) Hawth's analyses tool for ArcGIS. Available at: (accessed 25 May 2010).
4. Bloom, S.A. (1981) Similarity indices in community studies: potential pitfalls. Marine Ecology - Progress Series, 5, 125-128.
5. Bray, J.R. & Curtis, J.T. (1957) An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs, 27, 325-349.
6. Broennimann, O., Treier, U.A., Müller-Schärer, H., Thuiller, W., Peterson, A.T. & Guisan, A. (2007) Evidence of climatic niche shift during biological invasion. Ecology Letters, 10, 701-709.
7. Colwell, R.K. & Rangel, T.F. (2009) Hutchinson's duality: the one and future niche. Proceedings of the National Academy of Science USA, 106, 19651-19658.
8. Diniz-Filho, J.A.F., Terribile, L.C., Cruz, M.J.R.D. & Vieira, L.C.G. (2010) Hidden patterns of phylogenetic non-stationarity overwhelm comparative analyses of niche conservatism and divergence. Global Ecology and Biogeography, 19, 916-926.
9. Dolédec, S., Chessel, D. & Gimaret-Carpentier, C. (2000) Niche separation in community analysis: a new method. Ecology, 81, 2914-2927.
10. Dormann, C.F., Gruber, B., Winter, M. & Herrmann, D. (2010) Evolution of climate niches in European mammals? Biology Letters, 6, 229-232.
11. Elith, J. & Graham, C.G. (2009) Do they/how do they/why do they differ? - on finding reasons for differing performance of species distributions models. Ecography, 32, 66-77.
12. Elith, J. & Leathwick, J. (2009) Species distribution models: ecological explanation and prediction across space and time. Annual Reviews in Ecology, Evolution, and Systematics, 40, 677-697.
13. Elith, J., Kearney, M. & Phillips, S. (2010) The art of modelling range-shifting species. Methods in Ecology and Evolution, 1, 330-342.
14. Elton, C. (1927) Animal ecology. Sedgwick and Jackson, London.
15. Evans, M.E., Smith, S.A., Flynn, R.S. & Donoghue, M.J. (2009) Climate, niche evolution, and diversification of the 'bird-cage' evening primroses (Oenothera, sections Anogra and Kleinia). The American Naturalist, 173, 225-240.
16. Fitzpatrick, M.C., Weltzin, J.F., Sanders, N.J. & Dunn, R.R. (2007) The biogeography of prediction error: why does the introduced range of the fire ant over-predict its native range? Global Ecology and Biogeography, 16, 24-33.
17. Godsoe, W. (2010) I can't define the niche but I know it when I see it: a formal link between statistical theory and the ecological niche. Oikos, 119, 53-60.
18. Graham, C.H., Ron, S.R., Santos, J.C., Schneider, C.J. & Moritz, C. (2004) Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs. Evolution, 58, 1781-1793.
19. Grinnell, J. (1917) The niche-relationships of the California thrasher. Auk, 34, 427-433.
20. Guisan, A. & Thuiller, W. (2005) Predicting species distribution: more than simple habitat models. Ecology Letters, 8, 993-1009.
21. Guisan, A. & Zimmermann, N. (2000) Predictive habitat distribution models in ecology. Ecological Modelling, 135, 147-186.
22. Heikkinen, R.K., Luoto, M., Araújo, M.B., Virkkala, R., Thuiller, W. & Sykes, M.T. (2006) Methods and uncertainties in bioclimatic envelope modeling under climate change. Progress in Physical Geography, 30, 751-777.
23. Hijmans, R.J., Cameron, S.E., Parra, J.L., Jones, P.G. & Jarvis, A. (2005a) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25, 1965-1978.
24. Hijmans, R.J., Guarino, L., Jarvis, A., O'Brien, R., Mathur, P., Bussink, C., Cruz, M., Barrantes, I. & Rojas, E. (2005b) DIVA-GIS Version 5.2, Manual. Available at: (accessed 20 May 2010).
25. Horn, H.S. (1966) Measurement of overlap in comparative ecological studies. The American Naturalist, 100, 419-423.
26. Hutchinson, G.E. (1957) Concluding remarks. Cold Spring Harbor Symposia on Quantitative Biology, 22, 415-427.
27. Hutchinson, G.E. (1978) An introduction to population ecology. Yale University Press, New Haven, CT.
28. Jackson, S.T. & Overpeck, J.T. (2000) Responses of plant populations and communities to environmental changes of the late Quaternary. Palaeobiology, 26, 194-220.
29. Jakob, S.S., Heibl, C., Rödder, D. & Blattner, F.R. (2010) Population demography influences climatic niche evolution: evidence from diploid American Hordeum species (Poaceae). Molecular Ecology, 19, 1423-1438.
30. Jiménez-Valverde, A., Lobo, J.M. & Hortal, J. (2008) Not as good as they seem: the importance of concepts in species distribution modelling. Diversity and Distributions, 14, 885-890.
31. Knouft, J.H., Losos, J.B., Glor, R.E. & Kolbe, J.J. (2006) Phylogenetic analysis of the evolution of the niche in lizards of the Anolis sagrei group. Ecology, 87, 29-38.
32. Kohn, A.J. & Riggs, A.C. (1982) Sample size dependence in measures of proportional similarity. Marine Ecology - Progress Series, 9, 147-151.
33. Kozak, K.H. & Wiens, J.J. (2006) Does niche conservatism promote speciation? A case study in North American salamanders. Evolution, 60, 2604-2621.
34. Krebs, C.J. (1989) Ecological methodology. Harper and Row, New York.
35. Legendre, P. & Gallagher, E.D. (2001) Ecologically meaningful transformations for ordination of species data. Oecologia, 129, 271-280.
36. Legendre, P. & Legendre, L. (1998) Numerical ecology, 2nd edn. Elsevier, Amsterdam, The Netherlands.
37. Liu, C., Pam, M., Dawson, T.P. & Pearson, R.G. (2005) Selecting thresholds of occurrence in the prediction of species distributions. Ecography, 28, 385-393.
38. Lobo, J.M., Jiménez-Valverde, A. & Real, R. (2008) AUC: a misleading measure of the performance of predictive distribution models. Global Ecology and Biogeography, 17, 145-151.
39. McCormack, J.E., Zellmer, A.J. & Knowles, L.L. (2010) Does niche divergence accompany allopatric divergence in Aphelocoma Jays as predicted under ecological speciation?: insights from tests with niche models. Evolution, 64, 1231-1244.
40. Manel, S., Williams, H.C. & Ormerod, S.J. (2001) Evaluating presence-absence models in ecology: the need to account for prevalence. Journal of Applied Ecology, 38, 921-931.
41. Medley, K.A. (2010) Niche shifts during the global invasion of the Asian tiger mosquito, Aedes albopictus Skuse (Culicidae), revealed by reciprocal distribution models. Global Ecology and Biogeography, 19, 122-133.
42. Nakazato, T., Warren, D.L. & Moyle, L.C. (2010) Ecological and geographic modes of species divergence in wild tomatoes. American Journal of Botany, 97, 680-693.
43. Pearce, J. & Ferrier, S. (2000) Evaluating the predictive performance of habitat models developed using logistic regression. Ecological Modelling, 133, 225-245.
44. Pearman, P.B., Guisan, A., Broennimann, O. & Randin, C.F. (2008) Niche dynamics in space and time. Trends in Ecology and Evolution, 23, 149-158.
45. Peterson, A.T. & Vieglais, D.A. (2001) Predicting species invasions using ecological niche modeling: new approaches from bioinformatics attack a pressing problem. BioScience, 51, 363-371.
46. Peterson, A.T., Soberón, J. & Sánchez-Cordero, V. (1999) Conservatism of ecological niches in evolutionary time. Science, 285, 1265-1267.
47. Phillips, S.J. & Dudík, M. (2008) Modeling of species distributions with Maxent: new extensions and comprehensive evaluation. Ecography, 31, 161-175.
48. Phillips, S.J., Anderson, R.P. & Schapire, R.E. (2006) Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190, 231-259.
49. Pianka, E.R. (1973) The structure of lizard communities. Annual Review of Ecology and Systematics, 4, 53-74.
50. Puliam, H.R. (2000) On the relationship between niche and distribution. Ecology Letters, 3, 349-361.
51. Pyron, R.A. & Burbrink, F.T. (2009) Lineage diversification in a widespread species: roles for niche divergence and conservatism in the common kingsnake, Lampropeltis getula. Molecular Ecology, 18, 3443-3457.
52. R Development Core Team (2010) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: (accessed 11 November 2010).
53. Renkonen, O. (1938) Statistisch-ökologische Untersuchungen über die terrestrische Käferwelt der finnischen Bruchmoore. Annales Zoologici Societatis Zoologicae-Botanicae Fennicae 'Vanamo', 6, 1-231.
54. Ricklefs, R.E. & Lau, M. (1980) Bias and dispersion of overlap indices: results of some Monte Carlo simulations. Ecology, 61, 1019-1024.
55. Rödder, D. & Lötters, S. (2009) Niche shift versus niche conservatism? Climatic characteristics of the native and invasive ranges of the Mediterranean house gecko (Hemidactylus turcicus). Global Ecology and Biogeography, 18, 674-687.
56. Rödder, D. & Lötters, S. (2010) Explanative power of variables used in species distribution modelling: an issue of general model transferability or niche shift in the invasive greenhouse frog (Eleutherodactylus planirostris). Naturwissenschaften, 97, 781-796.
57. Rödder, D. & Schulte, U. (2010) Potential loss of genetic variability despite well established network of reserves: the case of the Iberian endemic lizard Lacerta schreiberi. Biodiversity and Conservation, 19, 2651-2666.
58. Rödder, D., Schmidtlein, S., Veith, M. & Lötters, S. (2009) Alien invasive slider turtle in unpredicted habitat: a matter of niche shift or of predictors studied? PLoS ONE, 4, e7843.
59. Smith, E.P. & Zaret, T.M. (1982) Bias in estimating niche overlap. Ecology, 63, 1248-1253.
60. Soberón, J. (2007) Grinnellian and Eltonian niches and geographic distributions of species. Ecology Letters, 10, 1115-1123.
61. Soberón, J. & Nakamura, M. (2009) Niches and distributional areas: concepts, methods, and assumptions. Proceedings of the National Academy of Sciences USA, 106, 19644-19650.
62. Soberón, J. & Peterson, A.T. (2005) Interpretation of models of fundamental ecological niches and species' distributional areas. Biodiversity Informatics, 2, 1-10.
63. Thuiller, W., Lavorel, S., Sykes, M.T. & Araújo, M.B. (2006) Using niche-based modelling to assess the impact of climate change on tree functional diversity in Europe. Diversity and Distributions, 12, 49-60.
64. Warren, D.L., Glor, R.E. & Turelli, M. (2008) Environmental niche equivalency versus conservatism: quantitative approaches to niche evolution. Evolution, 62, 2868-2883.
65. Wiens, J.J. & Graham, C.H. (2005) Niche conservatism: integrating evolution, ecology, and conservation biology. Annual Reviews in Ecology and Systematics, 36, 519-539.