Haplotype composition at the color locus is a major genetic determinant of skin color variation in vitis 3labruscana grapes

Theoretical and Applied Genetics

Volumn 122, Issue 7, 2011, Pages 1427-1438

  Azuma, Akifumi ^a   Udo, Yukinobu ^b   Sato, Akihiko ^a   Mitani, Nobuhito ^a   Kono, Atsushi ^a   Ban, Yusuke ^a   Yakushiji, Hiroshi ^a   Koshita, Yoshiko ^a   Kobayashi, Shozo ^a  

^a NATIONAL INSTITUTE OF FRUIT TREE SCIENCE   (Japan)

^b Yamanashi Fruit Tree Experiment Station   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHOCYANIN CONTENT; EUROPEAN SPECIES; GENETIC CONTROL; GENETIC FACTORS; HAPLOTYPES; QUANTITATIVE REAL TIME PCR; SKIN COLOR; VITIS VINIFERA;

ANTHOCYANINS; FRUITS; GENES; POLYMERASE CHAIN REACTION;

COLOR;

ANTHOCYANIN;

ALLELE; ARTICLE; BREEDING; FRUIT; GENETICS; GRAPE; HAPLOTYPE; METABOLISM; PIGMENTATION; PLANT CHROMOSOME; PLANT GENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEEDLING; SINGLE NUCLEOTIDE POLYMORPHISM; TETRAPLOIDY;

ALLELES; ANTHOCYANINS; BREEDING; CHROMOSOMES, PLANT; FRUIT; GENES, PLANT; HAPLOTYPES; PIGMENTATION; POLYMORPHISM, SINGLE NUCLEOTIDE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEEDLING; TETRAPLOIDY; VITIS;

VITACEAE; VITIS; VITIS LABRUSCA; VITIS VINIFERA;

EID: 79958722011     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1542-7     Document Type: Article

References (44)

1. Akagi T, Kanzaki S, Gao M, Tao R, Parfitt DE, Yonemori K., (2009) Quantitative real-time PCR to determine allele number for the astringency locus by analysis of a linked marker in Diospyros kaki Thunb. Tree Genet Gen 5:483-492
2. Azuma A, Kobayashi S, Yakushiji H, Yamada M, Mitani N, Sato A., (2007) VvmybA1 genotype determines grape skin color. Vitis 46:154-155
3. Azuma A, Kobayashi S, Mitani N, Shiraishi M, Yamada M, Ueno T, Kono A, Yakushiji H, Koshita Y., (2008) Genomic and genetic analysis of Myb-related genes that regulate anthocyanin biosynthesis in grape berry skin. Theor Appl Genet 117:1009-1019
4. Azuma A, Kobayashi S, Goto-Yamamoto N, Shiraishi M, Mitani N, Yakushiji H, Koshita Y., (2009) Color recovery in berries of grape (Vitis vinifera L.) 'Benitaka', a bud sport of 'Italia', is caused by a novel allele at the VvmybA1 locus. Plant Sci 176:470-478
5. Bogs J, Jaffé FW, Takos AM, Walker AR, Robinson SP (2007) The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development. Plant Physiol 143:1347-1361
6. Castellarin SD, Matthews MA, Gaspere GD, Gambetta GA., (2007) Water deficits accelerate ripening and induce changes in gene expression regulating flavonoid biosynthesis in grape berries. Planta 227:101-112
7. Deluc L, Barrieu F, Marchive C, Lauvergeat V, Decendit A, Richard T, Carde JP, Mérillon JM, Hamdi S., (2006) Characterization of a grapevine R2R3-MYB transcription factor that regulates the phenylpropanoid pathway. Plant Physiol 140:499-511
8. Deluc L, Bogs J, Walker AR, Ferrier T, Decendit A, Merillon JM, Robinson SP, Barrieu F., (2008) The transcription factor VvMYB5b contributes to the regulation of anthocyanin and proanthocyanin biosynthesis in developing grape berries. Plant Physiol 147:2041-2053
9. Doligez A, Bouquet A, Danglot Y, Lahogue F, Riaz S, Meredith CP, Edwards KJ., (2002) Genetic mapping of grapevine (Vitis vinifera L.) applied to the detection of QTLs for seedlessness and berry weight. Theor Appl Genet 105:780-795
10. Einset J, Pratt C (1975) Grapes. In: Janick J, Moore JN., (eds) Advances in fruit breeding. Purdue University Press, West Lafayette, pp 130-153
11. Fischer BM, Salakhutdinov I, Akkurt M, Eibach R, Edwards KJ, Topfer R, Zyprian EM., (2004) Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine. Theor Appl Genet 108:501-515
12. Fournier-Level A, Le Cunff L, Gomez C, Doligez A, Ageorges A, Roux C, Bertrand Y, Souquet JM, Cheynier V, This P (2009) Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) berry: a quantitative trait locus to quantitative trait nucleotide integrated study. Genetics 183:1127-1139
13. Fournier-Level A, Lacombe T, Le Cunff L, Boursiquot JM, This P (2010) Evolution of the VvMybA gene family, the majo determinant of berry colour in cultivated grapevine (Vitis vinifera L.). Heredity 104:351-362
14. Giannetto S, Velasco R, Troggio M, Malacarne G, Storchi P, Cancellier S, De Nardi B, Crespan M (2008) A PCR-based diagnostic tool for distinguishing grape skin color mutants. Plant Sci 175:402-409
15. Hedrick UP (1908) The grapes of New York. Albany J B Company, State Printers
16. Hedrick UP (1925) Systematic pomology. Macmillan, New York
17. Henry IM, Dilkes BP, Comai L (2006) Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction. Plant J 48:307-319
18. Hiratsuka S, Onodera H, Kawai Y, Kubo T, Itoh H, Wada R (2001) ABA and sugar effects on anthocyanin formation in grape berry cultured in vitro. Sci Hort 90:121-130
19. Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, ezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-467
20. Jeong ST, Goto-Yamamoto N, Kobayashi S, Esaka M (2004) Effects of plant hormones and shading on the accumulation of anthocyanins and the expression of anthocyanin biosynthetic genes in grape berry skins. Plant Sci 167:247-252
21. Kataoka I, Kubo Y, Sugiura A, Tomana T (1984) effects of temperature, cluster shading and some growth regulators on L-phenylalanine ammonia-lyase activity and anthocyanin accumulation on black grapes. Mem Coll Agric Kyoto Univ 124:35-44
22. Kataoka I, Sugiyama A, Beppu K (2003) Role of ultraviolet radiation in accumulation of anthocyanin in berries of 'Gros Colman' grapes (Vitis vinifera L.). J Jpn Soc Hort Sci 72:1-6
23. Kliewer WM, Torres RE (1972) Effect of controlled day and night temperatures on grape coloration. Am J Enol Vitic 23:71-77
24. Kobayashi S, Ishimaru M, Hiraoka K, Honda C (2002) Myb-related genes of the Kyoho grape (Vitis labruscana) regulate anthocyanin biosynthesis. Planta 215:924-933
25. Kobayashi S, Goto-Yamamoto N, Hirochika H (2004) Retrotransposon-induced mutations in grape skin color. Science 304:982
26. Kobayashi S, Goto-Yamamoto N, Hirochika H (2005) Association of VvmybA1 gene expression with anthocyanin production in grape (Vitis vinifera) skin-color mutants. J Jpn Soc Hort Sci 74:196-203
27. Koes R, Verweij W, Quattrocchio F (2005) Flavonoids; a colorful model for the regulation and evolution of biochemical pathways. Trends Plant Sci 10:236-242
28. Lijavetzky D, Ruiz-Garcia L, Cabezas JA, de Andres MT, Bravo G, Ibanez A, Carreno J, Cabello F, Ibanez J, Martinez-Zapater JM (2006) Molecular genetics of berry colour variation in table grape. Mol Gen Genom 276:427-435
29. Matus JT, Aquea F, Arce-Johnson P (2008) Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes. BMC Plant Biol 8:83
30. Matus JT, Loyola R, Vega A, Peña-Neira A, Bordeu E, Arce-Johnson P, Alcalde JA (2009) Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera. J Exp Bot 60:853-867
31. Mitani N, Azuma A, Fukai E, Hirochika H, Kobayashi S (2009) A retrotransposon-inserted VvmybA1a allele has been spread among cultivars of Vitis vinifera but not in North American and East Asian Vitis species. Vitis 48:55-56
32. Mori K, Goto-Yamamoto N, Kitayama M, Hashizume K (2007) Loss of anthocyanins in red-wine grape under high temperature. J Exp Bot 58:1935-1945
33. Salmaso M, Malacarne G, Troggio M, Faes G, Stefanini M, Grando MS, Velasco R (2008) A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes. Theor Appl Genet 116:1129-1143
34. Shiraishi M, Yamada M, Mitani N, Ueno T (2007) A rapid determination method for anthocyanin profiling in grape genetic resources. J Jpn Soc Hort Sci 76:28-35
35. Snyder E (1937) Grape development and improvement. In: Yearbook of agriculture 1937. Washington, DC, pp 631-664
36. Terrier N, Torregrosa L, Ageorges A, Vialet S, Verriès C, Cheynier V, Romieu C (2009) Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in grapevine and suggests additional targets in the pathway. Plant Physiol 149:1028-1041
37. This P, Lacombe T, Cadle-Davidson M, Owens CL (2007) Wine grape (Vitis vinifera L.) color associates with allelic variation in the domestication gene VvmybA1. Theor Appl Genet 114:723-730
38. Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Dematte L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando SM, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, Van de Peer Y, Salamini F, Viola R (2007) A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2:e1326
39. Walker AR, Lee E, Robinson SP (2006) Two new grape cultivars, bud sports of Cabernet Sauvignon bearing pale-coloured berries, are the result of deletion of two regulatory genes of the berry colour locus. Plant Mol Biol 62:623-635
40. Walker AR, Lee E, Bogs J, McDavid DAJ, Thomas MR, Robinson SP (2007) White grapes arose through the mutation of two similar and adjacent regulatory genes. Plant J 49:772-785
41. Winkler AJ, Cook JA, Kliewer WM, Lider LA (1974) General viticulture. University of California Press, Berkley.
42. Yakushiji H, Kobayashi S, Goto Yamamoto N, Jeong ST, Sueta T, Mitani N, Azuma A (2006) A skin color mutation of grapevine, from black-skinned 'Pinot Noir' to white-skinned 'Pinot Blanc' is caused by the deletion of the functional VvmybA1 allele. Biosci Biotechnol Biochem 70:1506-1508
43. Yamane T, Jeong ST, Goto-Yamamoto N, Koshita Y, Kobayashi S (2006) Effects of temperature on anthocyanin biosynthesis in grape berry skins. Am J Enol Vitic 57:54-59
44. Zheng Y, Tian L, Liu H, Pan Q, Zhan J, Huang W (2009) Sugars induce anthocyanin accumulation and flavanone 3-hydroxylase expression in grape berries. Plant Growth Regul 58:251-260