Quantitative real-time PCR to determine allele number for the astringency locus by analysis of a linked marker in Diospyros kaki Thunb

Tree Genetics and Genomes

Volumn 5, Issue 3, 2009, Pages 483-492

  Akagi, Takashi ^a   Kanzaki, Shinya ^b   Gao, Mai ^a   Tao, Ryutaro ^a   Parfitt, Dan E ^c   Yonemori, Keizo ^a  

^a KYOTO UNIVERSITY   (Japan)

^b KINKI UNIVERSITY   (Japan)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

D. kaki; Genotype; Persimmon; Polyploid; Real time PCR

Indexed keywords

DIOSPYROS; DIOSPYROS KAKI;

EID: 67349161418     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-009-0202-4     Document Type: Article

References (37)

1. U Bond C Neal D Donnelly TC James 2004 Aneuploidy and copy number breakpoints in the genome of large yeasts mapped by microarray hybridization Curr Genet 45 360 370 (Pubitemid 38878482)
2. TL Burton BC Husband 2001 Fecundity and offspring ploidy in matings among diploid, triploid and tetraploid Chamerion angustifolium (Onagraceae): consequences for tetraploid establishment Heredity 87 573 582 (Pubitemid 34067645)
3. D Carputo A Barone L Frusciante 2000 2n gametes in the potato: essential ingredients for breeding and germplasm transfer Theor Appl Genet 101 805 813
4. E Chevreau Y Lespinasse M Gallet 1985 Inheritance of pollen enzymes and polyploidy origin of apple (Malus x domestica Borkh.) Theor Appl Genet 71 268 277
5. YA Choi R Tao K Yonemori A Sugiura 2003 Physical mapping of 45S rDNA by fluorescent in situ hybridization in persimmon (Diospyros kaki) and its wild relatives J Hort Sci Biotechnol 78 265 271 (Pubitemid 36380414)
6. SJ D'Surney LR Shugart CW Theodorakis 2001 Genetic markers and genotyping methodologies: an overview Ecotoxicology 10 201 204 (Pubitemid 32681926)
7. JI Doyle JL Doyle 1987 A rapid DNA isolation procedure for small quantities or fresh leaf tissue of woody plants BioTechniques 19 11 15
8. FAO (2007) ProdSTAT database. http://faostat.fao.org. Accessed 10 Oct 2007
9. Galbraith 2004 Cytometry and plant sciences: a personal retrospective Cytometry A 58 37 44 (Pubitemid 38337827)
10. M Gao R Tao K Miura AM Dandekar A Sugiura 2001 Transformation of Japanese persimmon (Diospyros kaki Thunb.) with apple cDNA encoding NADP-dependent sorbitol-6phosphate dehydrogenase Plant Sci 160 837 845 (Pubitemid 32332015)
11. A Hagberg S Ellerstorm 1959 The competition between diploid, tetraploid and aneuploid rye. Theoretical and practical aspect Hereditas 45 369 415
12. NR Hauck H Yamane R Tao AF Iezzoni 2006 Accumulation of nonfunctional S-haplotypes results in the breakdown of gametophytic self-incompatibility in tetraploid Prunus Genetics 172 1191 1198 (Pubitemid 43345450)
13. IM Henry BP Dilkes K Young B Watson H Wu L Comai 2005 Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response Genetics 170 1979 1988 (Pubitemid 41362847)
14. IM Henry BP Dilkes L Comai 2006 Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction Plant J 48 307 319 (Pubitemid 44484871)
15. Y Kanayama H Mori H Imaseki S Yamaki 1992 Nucleotide sequence of a cDNA encoding NADP-sorbitol-6-phosphate dehydrogenase from apple Plant Physiol 100 1607 1608
16. S Kanzaki A Sato M Yamada K Yonemori A Sugiura 2001 Identification of molecular markers linked to the trait of natural astringency loss of Japanese persimmon (Diospyros kaki) Fruit J Am Soc Hort Sci 126 1 51 55 (Pubitemid 32097454)
17. S Kanzaki A Sato M Yamada M Utsunomiya A Kitajima A Ikegami K Yonemori 2008 RFLP markers for the selection of pollination-constant and non-astringent (PCNA)-type persimmon and examination of the inheritance mode of the markers J Jpn Soc Hort Sci 77 28 32 (Pubitemid 351185038)
18. S Kanzaki M Yamada A Sato N Mitani N Utsunomiya K Yonemori 2008 Conversion of RFLP markers for the selection of pollination-constant and non-astringent type persimmons (Diospyros kaki Thunb.) into PCR-based markers J Jpn Soc Hort Sci 78 68 73
19. PM Lyrene N Vorsa JR Ballington 2003 Polyploidy and sexual polyploidization in the genus Vaccinium Euphytica 133 27 36 (Pubitemid 37216041)
20. G Maheswaran M Welander JF Hutchinson MW Graham D Richards 1992 Transformation of apple rootstock M26 with Agrobacterium-tumefaciens J Plant Physiol 139 560 568
21. I Namikawa M Higashi 1928 On the number of chromosomes in Diospyros kaki L. f. and Diospyros lotus L Bot Mag (Tokyo) 42 436 438
22. Y Ochshorn A Bar-Shira A Jonish Y Yaron 2006 Rapid prenatal diagnosis of aneuploidy for chromosome 21, 18, 13, and X by quantitative fluorescence polymerase chain reaction Fetal Diagn Ther 21 4 326 331 (Pubitemid 43875138)
23. Randolph 1935 Cytogenetics of tetraploid maize J Agric Res 50 591 605
24. M Rommel 1961 Aneuploidy, seed set and sterility in artificially induced autotetraploid Hordeum vulgare L Can J Genet Cytol 3 272 282
25. N Roux A Toloza Z Radecki FJ Zapata-Arias J Dolezel 2003 Rapid detection of aneuploidy in Musa using flow cytometry Plant Cell Rep 21 5 483 490 (Pubitemid 36211124)
26. R Scorza JM Cordts DW Ramming RL Emershad 1995 Transformation of grape (Vitis vinifera L.) zygotic-derived somatic embryos and regeneration of transgenic plants Plant Cell Rep 14 589 592
27. ™-derived transgenic maize Plant Cell Rep 20 948 954 (Pubitemid 34271241)
28. TaKaRa (2004) RR041A e.v.0408 ver. 2 protocol. http://www.takara-bio.eu/ pdf/SYBR.pdf. Accessed 3 April 2008
29. M Tamura R Tao K Yonemori N Utsunomiya A Sugiura 1998 Ploidy level and genome size of several Diospyros species J Jpn Soc Hort Sci 67 306 312 (Pubitemid 128468336)
30. The French-Italian Public Consortium for Grapevine Genome Characterization 2007 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Nature 449 463 468
31. T Tsujie M Takemura T Kimura S Koichiro T Tsutsui K Ogita M Ozaki Y Murata 2006 Rapid detection of trisomy 21 by gene dosage analysis using quantitative real-time polymerase chain reaction J Obstet Gynaecol Res 32 368 372 (Pubitemid 44050733)
32. CJ Wang L Harper WZ Cande 2006 High-resolution single-copy gene fluorescence in situ hybridization and its use in the construction of a cytogenetic map of maize chromosome 9 Plant Cell 18 529 544 (Pubitemid 43956159)
33. A Yamada R Tao 2006 High frequency sexual polyploidization observed in hexaploid Japanese persimmon (Diospyros kaki) 'Fujiwaragosho' J Hort Sci Biotechnol 81 402 408 (Pubitemid 43828926)
34. K Yonemori M Yamada A Sugiura 2000 Persimmon genetics and breeding Plant Breed Rev 19 191 225
35. K Yonemori C Honsho S Kanzaki H Ino A Ikegami A Kitajima A Sugiura DE Parfitt 2008 Sequence analyses of the ITS regions and the mat K gene for determining phylogenetic relationships of Diospyros kaki (persimmon) with other wild Diospyros (Ebenaceae) species Tree Gen Genomes 4 149 158 (Pubitemid 351214662)
36. DH Zhuang A Kitajima M Ishida 1990 Chromosome numbers of Diospyros kaki cultivars J Jpn Soc Hort Sci 59 289 297
37. B Zimmermann WF HolzgreveW S Hahn 2002 Novel real-time quantitative PCR test for trisomy 21 Clin Chem 48 362 363 (Pubitemid 34107277)