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Volumn 283, Issue 1, 2011, Pages 122-135

Modeling non-homologous end joining

Author keywords

DNA repair pathway; Sequential model; Two phase model

Indexed keywords

ARTEMIS; DNA DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT; KU ANTIGEN; LIGASE IV; NUCLEAR PROTEIN; PROTEIN KINASE; UNCLASSIFIED DRUG; XRCC4 PROTEIN;

EID: 79958288747     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2011.05.015     Document Type: Article
Times cited : (17)

References (32)
  • 2
    • 39549114009 scopus 로고    scopus 로고
    • Differential regulation of the cellular response to DNA double-strand breaks in G1
    • Barlow J.H., Lisby M., Rothstein R. Differential regulation of the cellular response to DNA double-strand breaks in G1. Mol. Cell. 2008, 30:73-85.
    • (2008) Mol. Cell. , vol.30 , pp. 73-85
    • Barlow, J.H.1    Lisby, M.2    Rothstein, R.3
  • 3
    • 0032971199 scopus 로고    scopus 로고
    • Absence of DNA ligase IV protein in XR-1 cells: evidence for stabilization by XRCC4
    • Bryans M., Valenzano M.C., Stamato T.D. Absence of DNA ligase IV protein in XR-1 cells: evidence for stabilization by XRCC4. Mutat. Res. 1999, 433:53-58.
    • (1999) Mutat. Res. , vol.433 , pp. 53-58
    • Bryans, M.1    Valenzano, M.C.2    Stamato, T.D.3
  • 4
    • 15444370124 scopus 로고    scopus 로고
    • Processing of DNA for non-homologous end-joining by cell-free extract
    • Budman J., Chu G. Processing of DNA for non-homologous end-joining by cell-free extract. EMBO J. 2005, 24(4):849-860.
    • (2005) EMBO J. , vol.24 , Issue.4 , pp. 849-860
    • Budman, J.1    Chu, G.2
  • 5
    • 34247602569 scopus 로고    scopus 로고
    • Interaction of the Ku heterodimer with the DNA ligase IV/XRCC4 complex and its regulation by DNA-PK
    • Costantini S., Woodbine L., Andreoli L., Jeggo P.A., Vindigni A. Interaction of the Ku heterodimer with the DNA ligase IV/XRCC4 complex and its regulation by DNA-PK. DNA Repair 2007, 6:712-722.
    • (2007) DNA Repair , vol.6 , pp. 712-722
    • Costantini, S.1    Woodbine, L.2    Andreoli, L.3    Jeggo, P.A.4    Vindigni, A.5
  • 6
    • 39749184636 scopus 로고    scopus 로고
    • Biological kinetics model of DSB repair and induction of γ-H2AX foci by non-homologous end joining
    • Cucinotta F.A., Pluth H.M., Anderson J.M., Harper J.V., O'Neill P. Biological kinetics model of DSB repair and induction of γ-H2AX foci by non-homologous end joining. Radiat. Res. 2008, 169:214-222.
    • (2008) Radiat. Res. , vol.169 , pp. 214-222
    • Cucinotta, F.A.1    Pluth, H.M.2    Anderson, J.M.3    Harper, J.V.4    O'Neill, P.5
  • 7
    • 28544448011 scopus 로고    scopus 로고
    • Autophosphorylation of DNA-dependent protein kinase regulates DNA end processing and may also alter double-strand break repair pathway choice
    • Cui X.P., Yu Y.P., Gupta S., MCho Y., Lees-Miller S.P., Meek K. Autophosphorylation of DNA-dependent protein kinase regulates DNA end processing and may also alter double-strand break repair pathway choice. Mol. Cell. Biol. 2005, 25:10842-10852.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 10842-10852
    • Cui, X.P.1    Yu, Y.P.2    Gupta, S.3    MCho, Y.4    Lees-Miller, S.P.5    Meek, K.6
  • 8
    • 0037124373 scopus 로고    scopus 로고
    • Synapsis of DNA ends by DNA-dependent protein kinase
    • DeFazio L.G., Stansel R.M., Griffith J.D., Chu G. Synapsis of DNA ends by DNA-dependent protein kinase. EMBO J. 2002, 21(3):3192-3200.
    • (2002) EMBO J. , vol.21 , Issue.3 , pp. 3192-3200
    • DeFazio, L.G.1    Stansel, R.M.2    Griffith, J.D.3    Chu, G.4
  • 9
    • 33748872519 scopus 로고    scopus 로고
    • Interplay between Ku, 2006. Artemis, and the DNA-dependent protein kinase catalytic subunit at DNA ends. J. Biol. Chem. 281(38)
    • Drouet, J., Frit, P., Delteil, C., de Villartay, J.P., Salles, B., Calsou, P., 2006. Interplay between Ku, 2006. Artemis, and the DNA-dependent protein kinase catalytic subunit at DNA ends. J. Biol. Chem. 281(38), 27784-27793.
    • (2006) , pp. 27784-27793
    • Drouet, J.1    Frit, P.2    Delteil, C.3    de Villartay, J.P.4    Salles, B.5    Calsou, P.6
  • 10
    • 0036566036 scopus 로고    scopus 로고
    • Mammalian Ku86 mediates chromosomal fusions and apoptosis caused by critically short telomeres
    • Espejel S., Franco S., Rodríguez-Perales S., Bouffler S.D., Cigudosa J.C., Blasco M.A. Mammalian Ku86 mediates chromosomal fusions and apoptosis caused by critically short telomeres. EMBO J. 2002, 21(9):2207-2219.
    • (2002) EMBO J. , vol.21 , Issue.9 , pp. 2207-2219
    • Espejel, S.1    Franco, S.2    Rodríguez-Perales, S.3    Bouffler, S.D.4    Cigudosa, J.C.5    Blasco, M.A.6
  • 11
    • 34250627892 scopus 로고
    • Geometric singular perturbation for ordinary differential equations
    • Fenichel N. Geometric singular perturbation for ordinary differential equations. J. Differential Equation 1979, 31:53-98.
    • (1979) J. Differential Equation , vol.31 , pp. 53-98
    • Fenichel, N.1
  • 13
    • 0000391880 scopus 로고    scopus 로고
    • Evidence for DNA-PK-dependent and -independent DNA double-strand break repair pathways in mammalian cells as a function of the cell cycle
    • Lee S.E., Mitchell R.A., Cheng A., Hendrickson E.A. Evidence for DNA-PK-dependent and -independent DNA double-strand break repair pathways in mammalian cells as a function of the cell cycle. Mol. Cell. Biol. 1997, 17(3):1425-1433.
    • (1997) Mol. Cell. Biol. , vol.17 , Issue.3 , pp. 1425-1433
    • Lee, S.E.1    Mitchell, R.A.2    Cheng, A.3    Hendrickson, E.A.4
  • 14
    • 0025224761 scopus 로고
    • Human cells contain a DNA-activated protein kinase that phosphorylate simian virus 40T antigen, mouse p53, and the human Ku autoantigen
    • Lees-Miller S.P., Chen Y.R., Anderson C.W. Human cells contain a DNA-activated protein kinase that phosphorylate simian virus 40T antigen, mouse p53, and the human Ku autoantigen. Mol. Cell. Biol. 1990, 10:6472-6481.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 6472-6481
    • Lees-Miller, S.P.1    Chen, Y.R.2    Anderson, C.W.3
  • 15
    • 59849089955 scopus 로고    scopus 로고
    • Repair of ionizing-induced DNA double-strand breaks by non-homologous end-joining
    • Mahaney B.L., Meek K., Lees-Miller S.P. Repair of ionizing-induced DNA double-strand breaks by non-homologous end-joining. Biochem. J. 2009, 417:639-650.
    • (2009) Biochem. J. , vol.417 , pp. 639-650
    • Mahaney, B.L.1    Meek, K.2    Lees-Miller, S.P.3
  • 16
    • 33845484385 scopus 로고    scopus 로고
    • Dynamic assembly of end-joining complexes requires interaction between Ku70/80 and XRCC4. Proc. Natl. Acad. Sci. USA 103, 18597-18602
    • Mari, P.O., Florea, B.I., Persengiev, S.P., Bruggenwirth, N.S., Modesti, M., et al., 2006. Dynamic assembly of end-joining complexes requires interaction between Ku70/80 and XRCC4. Proc. Natl. Acad. Sci. USA 103, 18597-18602.
    • (2006)
    • Mari, P.O.1    Florea, B.I.2    Persengiev, S.P.3    Bruggenwirth, N.S.4    Modesti, M.5
  • 18
    • 3242875642 scopus 로고    scopus 로고
    • The DNA-dependent protein kinase: the director at the end
    • Meek K., Gupta S., Ramsden D.A., Lees-Miller S.P. The DNA-dependent protein kinase: the director at the end. Immunol. Rev. 2004, 200(1):132-141.
    • (2004) Immunol. Rev. , vol.200 , Issue.1 , pp. 132-141
    • Meek, K.1    Gupta, S.2    Ramsden, D.A.3    Lees-Miller, S.P.4
  • 19
  • 20
    • 0023018810 scopus 로고
    • Characterization of the DNA-binding protein antigen Ku recognized by autoantibodies from patients with rheumatic disorders
    • Mimori T., Hardin J.A., Steitz J.A. Characterization of the DNA-binding protein antigen Ku recognized by autoantibodies from patients with rheumatic disorders. J. Biol. Chem. 1986, 261:2274-2278.
    • (1986) J. Biol. Chem. , vol.261 , pp. 2274-2278
    • Mimori, T.1    Hardin, J.A.2    Steitz, J.A.3
  • 21
    • 79960616484 scopus 로고    scopus 로고
    • Structural biology of DNA repair: spatial organizational of the multicomponent complexes of non-homologous end joining
    • Ochi T., Sibanda B.L., Wu Q., Chirgradz D.Y., Bolanos-Barcia V.M., Blundell T. Structural biology of DNA repair: spatial organizational of the multicomponent complexes of non-homologous end joining. J. Nucleic Acids 2010, 2010:621-695.
    • (2010) J. Nucleic Acids , vol.2010 , pp. 621-695
    • Ochi, T.1    Sibanda, B.L.2    Wu, Q.3    Chirgradz, D.Y.4    Bolanos-Barcia, V.M.5    Blundell, T.6
  • 22
    • 13744257619 scopus 로고    scopus 로고
    • Differential activation of DNA-PK based on DNA strand orientation and sequences bias
    • Pawelczak K.S., Andrews B.J., Turchi J.J. Differential activation of DNA-PK based on DNA strand orientation and sequences bias. Nucleic Acid Res. 2005, 33:152-161.
    • (2005) Nucleic Acid Res. , vol.33 , pp. 152-161
    • Pawelczak, K.S.1    Andrews, B.J.2    Turchi, J.J.3
  • 24
    • 79960607271 scopus 로고    scopus 로고
    • Non-homologous end joining in cell-free extracts
    • Sharma S., Raghavan S.C. Non-homologous end joining in cell-free extracts. J. Nucleic Acids 2010, 2010:389129.
    • (2010) J. Nucleic Acids , vol.2010 , pp. 389129
    • Sharma, S.1    Raghavan, S.C.2
  • 25
    • 34249938518 scopus 로고    scopus 로고
    • Cernunnos/XLF promotes the ligation of mismatched and noncohesive DNA ends. Proc. Natl. Acad. Sci. USA 104
    • Tsai, C.J., Kim, S.A., Chu, G., 2007. Cernunnos/XLF promotes the ligation of mismatched and noncohesive DNA ends. Proc. Natl. Acad. Sci. USA 104, 7851-7856.
    • (2007) , pp. 7851-7856
    • Tsai, C.J.1    Kim, S.A.2    Chu, G.3
  • 26
    • 0034548910 scopus 로고    scopus 로고
    • Cisplatin-DNA adducts inhibit translocation of the Ku subunits of DNA-PK
    • Turchi J.J., Henkels K.M., Zhou Y. Cisplatin-DNA adducts inhibit translocation of the Ku subunits of DNA-PK. Nucleic Acid Res. 2000, 28:4634-4641.
    • (2000) Nucleic Acid Res. , vol.28 , pp. 4634-4641
    • Turchi, J.J.1    Henkels, K.M.2    Zhou, Y.3
  • 28
    • 41549155601 scopus 로고    scopus 로고
    • From DNA end chemistry to cell-cycle response: the importance of structure, even when it's broken
    • Wyman C., Warmerdam D.O., Kanaar R. From DNA end chemistry to cell-cycle response: the importance of structure, even when it's broken. Mol. Cell. 2008, 30:5-6.
    • (2008) Mol. Cell. , vol.30 , pp. 5-6
    • Wyman, C.1    Warmerdam, D.O.2    Kanaar, R.3
  • 30
    • 45749124305 scopus 로고    scopus 로고
    • Live cell imaging of XLF and XRCC4 reveals a oval view of protein assembly in the non-homologous end-joining pathway
    • Yano Y., Chen D.J. Live cell imaging of XLF and XRCC4 reveals a oval view of protein assembly in the non-homologous end-joining pathway. Cell Cycle 2008, 7(10):1321-1325.
    • (2008) Cell Cycle , vol.7 , Issue.10 , pp. 1321-1325
    • Yano, Y.1    Chen, D.J.2
  • 31
    • 67349246802 scopus 로고    scopus 로고
    • CtIP-BRCA1 modulates the choice of DNA double-strand break repair pathway throughout the cell cycle
    • Yun M.H., Hiom K. CtIP-BRCA1 modulates the choice of DNA double-strand break repair pathway throughout the cell cycle. Nature 2009, 459(7245):460-463.
    • (2009) Nature , vol.459 , Issue.7245 , pp. 460-463
    • Yun, M.H.1    Hiom, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.