What's black and white about the grey matter?

Neuroinformatics

Volumn 9, Issue 2-3, 2011, Pages 167-179

  Douglas, Rodney J ^a   Martin, Kevan A C ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Canonical cortical circuits; Golgi stain; High throughput circuit reconstruction; Law of Dynamic Polarisation; Neuron Doctrine

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; BRAIN CORTEX; BRAIN MAPPING; COMPUTER SIMULATION; CYTOLOGY; HISTORY; HUMAN; NEUROANATOMICAL TRACT TRACING; NEUROANATOMY; NEUROPHYSIOLOGY; PHYSIOLOGY; REVIEW;

ANIMALS; BRAIN MAPPING; CEREBRAL CORTEX; COMPUTER SIMULATION; HISTORY, 19TH CENTURY; HISTORY, 20TH CENTURY; HISTORY, 21ST CENTURY; HUMANS; MODELS, NEUROLOGICAL; NEUROANATOMICAL TRACT-TRACING TECHNIQUES; NEUROANATOMY; NEUROPHYSIOLOGY;

EID: 79958176378     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-011-9106-1     Document Type: Review

References (84)

1. Ananthanarayanan, R., Esser, S. K., Simon, H. D., & Modha, D. S. (2009). The cat is out of the bag: Cortical Simulations with 10-9 neurons and 10-13 synapses. Supercomputing 09: Proceedings of the ACM/IEEE SC2009 Conference on High Performance Networking and Computing, Nov 14-20, 2009, Portland, OR.
2. Y Banitt KA Martin I Segev 2007 A biologically realistic model of contrast invariant orientation tuning by thalamocortical synaptic depression The Journal of Neuroscience 27 10230 10239 17881529 10.1523/JNEUROSCI.1640-07.2007 1:CAS:528:DC%2BD2sXhtFahsbfL (Pubitemid 47450466)
3. HB Barlow 1972 A neuron doctrine for perceptual psychology Perception 1 371 394 4377168 10.1068/p010371 1:STN:280:DyaE2M3hslehsA%3D%3D
4. Barlow, H. B. (1977). Performance, perception, dark-light, and gain boxes. In E. Pöppel, R. Held, & J. E. Dowling (Eds.), Neuronal mechanisms in visual perception (pp. 394-397). Cambridge: Neurosciences Research Program Bulletin 15, MIT Press. (Pubitemid 8259846)
5. Barlow, H. B. (1980). Cortical function: A tentative theory and preliminary test. In D. McFadden (Ed.), Neural mechanisms in behaviour (pp. 143-171). New York: Springer.
6. P Barone A Batardiere K Knoblauch H Kennedy 2000 Laminar distribution of neurons in extrastriate areas projecting to visual areas V1 and V4 correlates with the hierarchical rank and indicates the operation of a distance rule The Journal of Neuroscience 20 3263 3281 10777791 1:CAS:528:DC%2BD3cXivFKhtLs%3D (Pubitemid 30263144)
7. Bas, E., & Erdogmus, D. (2011). Principal curves as skeletons of tubular objects: locally characterizing the structures of axons. Neuroinformatics, THIS ISSUE.
8. T Binzegger RJ Douglas KAC Martin 2004 A quantitative map of the circuit of cat primary visual cortex The Journal of Neuroscience 24 8441 8453 15456817 10.1523/JNEUROSCI.1400-04.2004 1:CAS:528:DC%2BD2cXosVOjtrw%3D (Pubitemid 39313766)
9. T Binzegger RJ Douglas KAC Martin 2009 Topology and dynamics of the canonical circuit of cat V1 Neural Networks 22 1071 1078 19632814 10.1016/j.neunet.2009.07.011 1:STN:280:DC%2BD1MnmtFSluw%3D%3D
10. ES Boyden F Zhang E Bamberg G Nagel K Deisseroth 2005 Millisecond-timescale, genetically targeted optical control of neural activity Nature Neuroscience 8 1263 1268 16116447 10.1038/nn1525 1:CAS:528: DC%2BD2MXpt1egtrc%3D (Pubitemid 43348147)
11. V Braitenberg F Lauria 1960 Toward a mathematical description of the grey substance of nervous systems Nuovo Cimento 18 1135 1151
12. Braitenberg, V., & Schüz, A. (1991). Peters' rule and White's exceptions. In: Anatomy of the cortex (pp. 109-112). Berlin: Springer.
13. Cajal, S. R. (1913-1914). Estudios Sobre la Degeneración y Regeneración del Sistema Nervioso, Moya. 'Cajal's Degeneration and Regeneration of the Nervous System', OUP New York. Reprinted and edited with additional translations by J DeFelipe, J. and EG Jones, (1991).
14. Cajal, S. R. (1921). Histology of the visual cortex of the cat. Archivos de Neurobiologia, 2, 338-362. In. J. DeFelipe & E. G. Jones (Eds.), Cajal of the cerebral cortex (pp. 495-523). New York: OUP.
15. Cajal, S. R. (1937). Recollections of my life. Translated by EH Craigie, J Cano. 1989 Philadephia PA Am Philos. Soc.
16. EM Callaway 2008 Transneuronal circuit tracing with neurotropic viruses Current Opinion in Neurobiology 18 617 623 19349161 10.1016/j.conb.2009.03.007 1:CAS:528:DC%2BD1MXmtVKksL8%3D
17. Chothani, P., Mehta, V., & Stepanyants, A. (2011). Automated tracing of neurites from light microscopy stacks of images. Neuroinformatics, THIS ISSUE.
18. YE Cohen RA Andersen 2002 A common reference frame for movement plans in the posterior parietal cortex Nature Reviews. Neuroscience 3 553 562 12094211 10.1038/nrn873 1:CAS:528:DC%2BD38XkvFKksb4%3D (Pubitemid 135706665)
19. Crick, F. H. C. In V. S. Ramachandran (1985). The neurobiology of perception. Perception 14, 97-103.
20. NM da Costa KAC Martin 2009 Selective targeting of the dendrites of corticothalamic cells by thalamic afferents in area 17 of the cat The Journal of Neuroscience 29 13919 13928 19890002 10.1523/JNEUROSCI.2785-09.2009
21. da Costa, N. M., & Martin, K. A. C. (2010). Whose cortical column would that be? Frontiers Neuroanat, 4, 16.
22. RJ Douglas KAC Martin 1991 Opening the grey box TINS 14 286 293 1719675 1:STN:280:DyaK38%2FlsF2qsg%3D%3D
23. RJ Douglas KAC Martin 2007 Recurrent neuronal circuits in the neocortex Current Biology 17 R496 R500 17610826 10.1016/j.cub.2007.04.024 1:CAS:528:DC%2BD2sXntFarsLk%3D (Pubitemid 46990871)
24. RJ Douglas KAC Martin D Whitteridge 1989 A canonical microcircuit for neocortex Neural Computation 1 480 488 10.1162/neco.1989.1.4.480
25. Eccles, J. C., Ito, M., & Szentágothai, J. (1967). The Cerebellum as a Neuronal Machine. New York: Springer. 343 pp.
26. GN Elston 2002 Cortical heterogeneity: implications for visual processing and polysensory integration Journal of Neurocytology 31 317 335 12815250 10.1023/A:1024182228103 (Pubitemid 36877379)
27. Elston, G. N., Benavides-Piccione, R., & DeFelipe, J. (2001). The pyramidal cell in cognition: a comparative study in human and monkey. Journal of Neuroscience, 21, RC163, 1-5.
28. DJ Felleman DC Van Essen 1991 Distributed hierarchical processing in the primate cerebral cortex Cerebral Cortex 1 1 47 1822724 10.1093/cercor/1.1.1-a 1:STN:280:DyaK38zltlGmsg%3D%3D
29. D Ferster S LeVay 1978 The axonal arborizations of lateral geniculate neurons in the striate cortex of the cat The Journal of Comparative Neurology 182 923 944 103938 10.1002/cne.901820510 1:STN:280:DyaE1M%2FovFSisg%3D%3D (Pubitemid 9074908)
30. Fulton, J. F. (1949). Physiology of the nervous system (pp. 288-312). New York: OUP.
31. Gilbert, C.D. (1983). Microcircuitry of the visual cortex. Annu Rev Neurosci. 6, 217-247. (Pubitemid 13101464)
32. CD Gilbert TN Wiesel 1979 Morphology and intracortical projections of functionally characterized neurons in the cat visual cortex Nature 280 120 125 552600 10.1038/280120a0 1:STN:280:DyaL3M%2Flt1antw%3D%3D (Pubitemid 9221733)
33. Gilbert, C. D., & Wiesel, T. N. (1981). Laminar specialization and intracortical connections in cat primary visual cortex. In F. O. Schmitt, F. G. Worden, G. Adelman, & S. G. Dennis (Eds.), The organization of the cerebral cortex (pp. 163-191). Cambridge: MIT.
34. S Haeusler K Schuch W Maass 2009 Motif distribution, dynamical properties, and computational performance of two data-based cortical microcircuit templates Journal of Physiology - Paris 103 73 87 10.1016/j.jphysparis.2009.05.006
35. KJ Hayworth N Kasthuri R Schalek JW Lichtman 2006 Automating the collection of ultrathin serial sections for large volume TEM reconstructions Microscopy and Microanalysis 12 86 87 10.1017/S1431927606066268 CUP (Pubitemid 44718751)
36. DJ Heeger EP Simoncelli JA Movshon 1996 Computational models of cortical visual processing Proceedings of the National Academy of Sciences of the United States of America 93 623 627 8570605 10.1073/pnas.93.2.623 1:CAS:528: DyaK28XnslOntQ%3D%3D (Pubitemid 26041138)
37. J Heinzle K Hepp KAC Martin 2007 A microcircuit model of the frontal eye fields The Journal of Neuroscience 27 9341 9353 17728448 10.1523/JNEUROSCI.0974- 07.2007 1:CAS:528:DC%2BD2sXhtVaksL7F (Pubitemid 47358213)
38. J Heinzle K Hepp KAC Martin 2010 A biologically realistic cortical model of eye movement control in reading Psychological Review 117 808 830 20658854 10.1037/a0019575
39. M Helmstaedter CP de Kock D Feldmeyer RM Bruno B Sakmann 2007 Reconstruction of an average cortical column in silico Brain Research Reviews 55 193 203 17822776 10.1016/j.brainresrev.2007.07.011 1:STN:280: DC%2BD2sngvF2gtQ%3D%3D (Pubitemid 47538764)
40. M Helmstaedter KL Briggman W Denk 2008 3D structural imaging of the brain with photons and electrons Current Opinion in Neurobiology 18 633 641 19361979 10.1016/j.conb.2009.03.005 1:CAS:528:DC%2BD1MXmtVKksL0%3D
41. CC Hilgetag MA O'Neill MP Young 1996 Indeterminate organization of the visual system Science 271 776 777 8628990 10.1126/science.271.5250.776 1:CAS:528:DyaK28Xptlyjsw%3D%3D (Pubitemid 26058925)
42. ML Hines H Markram F Schürmann 2008 Fully implicit parallel stimulation of single neurons Journal of Computational Neuroscience 25 439 448 18379867 10.1007/s10827-008-0087-5
43. JC Horton DL Adams 2005 The cortical column: a structure without a function Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 360 837 862 15937015 10.1098/rstb.2005.1623 (Pubitemid 40885668)
44. Hubel, D. H., & Wiesel, T. N. (1962). Receptive fields, binocular interaction and functional architecture in the cat's visual cortex. J. Physiol, 160, 106-154.
45. EM Izhikevich GM Edelman 2008 Large-scale model of mammalian thalamocortical systems PNAS 105 3593 3598 18292226 10.1073/pnas.0712231105 1:CAS:528:DC%2BD1cXjtlarsbw%3D (Pubitemid 351723597)
46. N Kalisman G Silberberg H Markram 2005 The neocortical microcircuit as a tabula rasa Proceedings of the National Academy of Sciences of the United States of America 102 880 885 15630093 10.1073/pnas.0407088102 1:CAS:528: DC%2BD2MXis1Cqtrg%3D (Pubitemid 40282759)
47. N Kasthuri JW Lichtman 2007 The rise of the 'projectome' Nature Methods 4 307 308 17396125 10.1038/nmeth0407-307 1:CAS:528:DC%2BD2sXkt1eqsro%3D (Pubitemid 46766971)
48. N Kasthuri JW Lichtman 2010 Neurocartography Neuropsychopharmacology 35 342 343 20010709 10.1038/npp.2009.138
49. M Kouh T Poggio 2008 A canonical neural circuit for cortical nonlinear operations Neural Computation 20 1427 1451 18254695 10.1162/neco.2008.02-07-466
50. JW Lichtman J Livet JR Sanes 2008 A technicolour approach to the connectome Nature Reviews. Neuroscience 9 417 422 18446160 10.1038/nrn2391 1:CAS:528:DC%2BD1cXmtVahurw%3D
51. Lorente de Nó, R. (1949). "Cerebral cortex: architecture, intracortical connections, motor projections," in Physiology of the Nervous System, ed. J. F. Fulton (New York: Oxford University Press), 288-312.
52. Lorente de Nó, R. (1992). The cerebral cortex of the mouse, a first contribution-the acoustic cortex. Somatosensory and Motor Research. 9, 3-36, translated by A. Fairen, J. Regidor, L. Kruger, from the original, La corteza cerebral raton, primera contribucion- la corteza acustica, Trabajos del Laboratorio de Investigaciones Biologicas de la Universidad de Madrid, 20 (1922) 41-78.
53. Markov, N. T., Misery, P., Falchier, A., Lamy, C., Vezoli, J., Quilodran, R., et al. (2010). Weight consistency specifies regularities of Macaque Cortical Networks. Cerebral Cortex, (in press).
54. H Markram 2006 The blue brain project Nature Reviews. Neuroscience 7 153 160 16429124 10.1038/nrn1848 1:CAS:528:DC%2BD28XlvFSjsg%3D%3D (Pubitemid 43151601)
55. H Markram 2008 Fixing the location and dimensions of functional neocortical columns HFSP Journal 2 132 135 19404466 10.2976/1.2919545
56. Markram, H. (2010). http://www.ted.com/talks/henry-markram- supercomputing-the-brain-s-secrets.html.
57. HS Meyer VC Wimmer M Hemberger RM Bruno CP de Kock A Frick B Sakmann M Helmstaedter 2010 Cell type-specific thalamic innervation in a column of rat vibrissal cortex Cerebral Cortex 20 2287 2303 20534783 10.1093/cercor/bhq069
58. HS Meyer VC Wimmer M Oberlaender CP de Kock B Sakmann M Helmstaedter 2010 Number and laminar distribution of neurons in a thalamocortical projection column of rat vibrissal cortex Cerebral Cortex 20 2277 2286 20534784 10.1093/cercor/bhq067
59. F Mormann S Kornblith RQ Quiroga A Kraskov M Cerf I Fried C Koch 2008 Latency and selectivity of single neurons indicate hierarchical processing in the human medial temporal lobe The Journal of Neuroscience 28 8865 8872 18768680 10.1523/JNEUROSCI.1640-08.2008 1:CAS:528:DC%2BD1cXhtFSnu7bP
60. VB Mountcastle 1997 The columnar organization of the neocortex Brain 120 Pt 4 701 722 9153131 10.1093/brain/120.4.701 (Pubitemid 27174104)
61. Narayanaswamy, A., Wang, Y., & Roysam, B. (2011). A preprocessing pipeline to enhance 3-D images of neuronal arbors. Neuroinformatics, THIS ISSUE.
62. DH O'Connor D Huber K Svoboda 2009 Reverse engineering the mouse brain Nature 461 923 929 19829372 10.1038/nature08539
63. A Peters ML Feldman 1976 The projection of the lateral geniculate nucleus to area 17 of the rat cerebral cortex. I. General description Journal of Neurocytology 5 63 84 1249593 10.1007/BF01176183 1:STN:280:DyaE287itF2lsg%3D%3D
64. RQ Quiroga L Reddy G Kreiman C Koch I Fried 2005 Invariant visual representation by single neurons in the human brain Nature 435 1102 1107 15973409 10.1038/nature03687 1:CAS:528:DC%2BD2MXltl2nt74%3D (Pubitemid 40910517)
65. RQ Quiroga G Kreiman C Koch I Fried 2008 Sparse but not 'grandmother-cell' coding in the medial temporal lobe Trends in Cognitive Sciences 12 87 91 18262826 10.1016/j.tics.2007.12.003
66. Rockland, K. S. (1997). Elements of cortical architecture. Hierarchy revisited. In K. S. Rockland, J. H. Kaas, & A. Peters (Eds.), Cerebral cortex, vol. 12 (pp. 243-293). New York: Plenum.
67. KS Rockland 2010 Five points on columns Frontiers in Neuroanatomy 4 1 10
68. KS Rockland DN Pandya 1979 Laminar origins and terminations of cortical connections to the occipital lobe in the rhesus monkey Brain Research 179 3 20 116716 10.1016/0006-8993(79)90485-2 1:STN:280:DyaL3c%2Fms1Cqsw%3D%3D (Pubitemid 10196213)
69. Rushton, W. A. H. (1977). Some memories of visual research in the past 50 years. In The pursuit of nature (pp. 85-104.). Cambridge: CUP.
70. U Rutishauser RJ Douglas 2009 State dependent computation using coupled recurrent networks Neural Computation 21 478 509 19431267 10.1162/neco.2008.03- 08-734
71. HS Seung 2009 Reading the book of memory: sparse sampling versus dense mapping of connectomes Neuron 62 17 29 19376064 10.1016/j.neuron.2009.03.020 1:CAS:528:DC%2BD1MXmvVaitbo%3D
72. Seung, H. S. (2010). http://www.ted.com/talks/sebastian-seung.html.
73. Shepherd, G. M. (1991). Foundations of the neuron doctrine. New York: Oxford University Press.
74. Sherrington, C. (1940). Man on his Nature. Cambridge. CUP. p. 277.
75. Sholl, D. (1956). The organisation of the cerebral cortex. London: Methuen.
76. Sullivan, L. (1896). The tall office building artistically considered. Lippincotts Magazine (March). In I. Athey (Ed.), Kindergarten chats and other writings. New York: Dover Publications. 1979.
77. JH Tao-Cheng PE Gallant MW Brightman A Dosemeci TS Reese 2007 Structural changes at synapses after delayed perfusion fixation in different regions of the mouse brain The Journal of Comparative Neurology 501 731 740 17299754 10.1002/cne.21276 1:CAS:528:DC%2BD2sXltFWgs7k%3D
78. Thompson, D. W. (1971). On growth and form. Abridged Edition. Cambridge: CUP.
79. M Tsodyks T Kenet A Grinvald A Arieli 1999 Linking spontaneous activity of single cortical neurons and the underlying functional architecture Science 286 1943 1946 10583955 10.1126/science.286.5446.1943 1:CAS:528: DyaK1MXnvFSiu74%3D (Pubitemid 129515900)
80. Turetken, E., Gonzalez, G., Blum, C., Fua, P. (2011). Automated reconstruction of dendritic and axonal trees by global optimization with geometric priors. Neuroinformatics, THIS ISSUE.
81. Wang, Y., Narayanaswamy, A., Tsai, C., Roysam, B. (2011). Generally Applicable 3D >Neuron Tracing Approach and System based on Open-Curve Snake. Neuroinformatics, THIS ISSUE.
82. TN Wiesel CD Gilbert 1983 The Sharpey-Schafer lecture. Morphological basis of visual cortical function Quarterly Journal of Experimental Physiology 68 525 543 6316398 1:STN:280:DyaL2c%2FntFCjsQ%3D%3D (Pubitemid 14247404)
83. VC Wimmer RM Bruno CP de Kock T Kuner B Sakmann 2010 Dimensions of a projection column and architecture of VPM and POm axons in rat vibrissal cortex Cerebral Cortex 20 2265 2276 20453248 10.1093/cercor/bhq068
84. Zhao, T., Xie, J., Amat, F., Clack, N., Ahammad, P., Peng, H., Long, F., Myers, E. (2011). Automated reconstruction of neuronal morphology based on local geometrical and global structural models. Neuroinformatics, THIS ISSUE.