Axonal reconstructions going live

Neuroinformatics

Volumn 9, Issue 2-3, 2011, Pages 129-131

  Canty, Alison J ^a,b   De Paola, Vincenzo ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF TASMANIA   (Australia)

Author keywords

Axons; Connectivity; Cortex; DIADEM; In vivo 2 photon imaging; Neuroanatomy; Sensory experience; Synapses; Synaptic plasticity

Indexed keywords

EID: 85027938755     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-011-9112-3     Document Type: Note

References (46)

1. De Vos, K.J., Grierson, A.J., Ackerley, S. & Miller, C.C. Role of axonal transport in neurodegenerative diseases. Annu Rev Neurosci 31, 151-173 (2008).
2. Cafferty, W.B., McGee, A.W. & Strittmatter, S.M. Axonal growth therapeutics: regeneration or sprouting or plasticity? Trends Neurosci 31, 215-220 (2008).
3. De Paola, V., et al. Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron 49, 861-875 (2006). (Pubitemid 43376083)
4. Brown, K.M., et al. The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions. Neuroinformatics (2011).
5. Bruno, R.M., Hahn, T.T., Wallace, D.J., de Kock, C.P. & Sakmann, B. Sensory experience alters specific branches of individual corticocortical axons during development. J Neurosci 29, 3172-3181 (2009).
6. Caroni, P. Overexpression of growth-associated proteins in the neurons of adult transgenic mice. J Neurosci Methods 71, 3-9 (1997). (Pubitemid 27145767)
7. Feng, G., et al. Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP. Neuron 28, 41-51 (2000).
8. De Paola, V., Arber, S. & Caroni, P. AMPA receptors regulate dynamic equilibrium of presynaptic terminals in mature hippocampal networks. Nat Neurosci 6, 491-500. (2003). (Pubitemid 36514697)
9. Svoboda, K. & Yasuda, R. Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron 50, 823-839 (2006). (Pubitemid 43850693)
10. Yang, G., Pan, F., Parkhurst, C.N., Grutzendler, J. & Gan, W.B. Thinned-skull cranial window technique for long-term imaging of the cortex in live mice. Nat Protoc 5, 201-208 (2010).
11. Holtmaat, A., et al. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat Protoc 4, 1128-1144 (2009).
12. Xu, H.T., Pan, F., Yang, G. & Gan, W.B. Choice of cranial window type for in vivo imaging affects dendritic spine turnover in the cortex. Nat Neurosci 10, 549-551 (2007). (Pubitemid 46652440)
13. Yu, X. & Zuo, Y. Spine plasticity in the motor cortex. Curr Opin Neurobiol (2010).
14. Murphy, T.H. & Corbett, D. Plasticity during stroke recovery: from synapse to behaviour. Nat Rev Neurosci 10, 861-872 (2009).
15. Holtmaat, A. & Svoboda, K. Experience-dependent structural synaptic plasticity in the mammalian brain. Nat Rev Neurosci 10, 647-658 (2009).
16. Gogolla, N., Galimberti, I. & Caroni, P. Structural plasticity of axon terminals in the adult. Curr Opin Neurobiol 17, 516-524 (2007).
17. Broser, P., Grinevich, V., Osten, P., Sakmann, B. & Wallace, D.J. Critical period plasticity of axonal arbors of layer 2/3 pyramidal neurons in rat somatosensory cortex: layer-specific reduction of projections into deprived cortical columns. Cereb Cortex 18, 1588-1603 (2008). (Pubitemid 351882037)
18. Wimmer, V.C., Broser, P.J., Kuner, T. & Bruno, R.M. Experienceinduced plasticity of thalamocortical axons in both juveniles and adults. J Comp Neurol 518, 4629-4648 (2010).
19. Feldman, D.E. & Brecht, M. Map plasticity in somatosensory cortex. Science 310, 810-815 (2005). (Pubitemid 41567332)
20. Barnes, S.J. & Finnerty, G.T. Sensory experience and cortical rewiring. Neuroscientist 16, 186-198 (2010).
21. Chklovskii, D.B., Mel, B.W. & Svoboda, K. Cortical rewiring and information storage. Nature 431, 782-788 (2004). (Pubitemid 39434067)
22. Hubener, M. & Bonhoeffer, T. Searching for engrams. Neuron 67, 363-371 (2010)
23. Butz, M., Worgotter, F. & van Ooyen, A. Activity-dependent structural plasticity. Brain Res Rev 60, 287-305 (2009).
24. Donohue, D.E. & Ascoli, G.A. Automated reconstruction of neuronal morphology: An overview. Brain Res Rev.
25. Broser, P.J., et al. Automated axon length quantification for populations of labelled neurons. J Neurosci Methods 169, 43-54 (2008).
26. Oberlaender, M., Bruno, R.M., Sakmann, B. & Broser, P.J. Transmitted light brightfield mosaic microscopy for threedimensional tracing of single neuron morphology. J Biomed Opt 12, 064029 (2007).
27. Bas E, E.D. Principal Curves as Skeletons of Tubular Objects: Locally Characterizing the Structures of Axons. Neuroinformatics (2011).
28. Chothani P, M.V., Stepanyants A Automated tracing of neurites from light microscopy stacks of images. Neuroinformatics (2011).
29. Turetken E, G.G., Blum C, Fua P Automated Reconstruction of > Dendritic and Axonal Trees by Global Optimization with Geometric Priors. Neuroinformatics (2011).
30. Zhao T, X.J., Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. (2011).
31. Wang Y, N.A., Tsai C, Roysam B Generally Applicable 3D > Neuron Tracing Approach and System based on Open-Curve Snake. (2011).
32. Narayanaswamy A, W.Y., Roysam B A,. Preprocessing Pipeline to Enhance 3-D Images of Neuronal Arbors. . Neuroinformatics (2011).
33. Luo, L., Callaway, E.M. & Svoboda, K. Genetic dissection of neural circuits. Neuron 57, 634-660 (2008). (Pubitemid 351335341)
34. Madisen, L., et al. A robust and high-throughput Cre reporting and characterization system for the whole mouse brain. Nat Neurosci 13, 133-140 (2009).
35. Novak, A., Guo, C., Yang, W., Nagy, A. & Lobe, C.G. Z/EG, a double reporter mouse line that expresses enhanced green fluorescent protein upon Cre-mediated excision. Genesis 28, 147-155 (2000).
36. Knott, G., Marchman, H., Wall, D. & Lich, B. Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. J Neurosci 28, 2959-2964 (2008). (Pubitemid 351442268)
37. Helmstaedter, M., Briggman, K.L. & Denk, W. 3D structural imaging of the brain with photons and electrons. Curr Opin Neurobiol 18, 633-641 (2008).
38. Li, J., Erisir, A. & Cline, H. In vivo time-lapse imaging and serial section electron microscopy reveal developmental synaptic rearrangements. Neuron 69, 273-286 (2011).
39. Gray, N.W., Weimer, R.M., Bureau, I. & Svoboda, K. Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biol 4, e370 (2006).
40. Minerbi, A., et al. Long-term relationships between synaptic tenacity, synaptic remodeling, and network activity. PLoS Biol 7, e1000136 (2009).
41. Ruthazer, E.S., Li, J. & Cline, H.T. Stabilization of axon branch dynamics by synaptic maturation. J Neurosci 26, 3594-3603 (2006).
42. Meyer, M.P. & Smith, S.J. Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms. J Neurosci 26, 3604-3614 (2006).
43. Misgeld, T., Kerschensteiner, M., Bareyre, F.M., Burgess, R.W. & Lichtman, J.W. Imaging axonal transport of mitochondria in vivo. Nat Methods 4, 559-561 (2007). (Pubitemid 47214773)
44. Dreosti, E., Odermatt, B., Dorostkar, M.M. & Lagnado, L. A genetically encoded reporter of synaptic activity in vivo. Nat Methods 6, 883-889 (2009).
45. Miesenbock, G. The optogenetic catechism. Science 326, 395-399 (2009).
46. Mank, M., et al. A FRET-based calcium biosensor with fast signal kinetics and high fluorescence change. Biophys J 90, 1790-1796 (2006).