-
1
-
-
40549101013
-
Post-initiation control by the initiation factor sigma
-
Artsimovitch, I. 2008. Post-initiation control by the initiation factor sigma. Mol. Microbiol. 68:1-3.
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 1-3
-
-
Artsimovitch, I.1
-
2
-
-
0033765116
-
RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro
-
Artsimovitch, I., V. Svetlov, L. Anthony, R. R. Burgess, and R. Landick. 2000. RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro. J. Bacteriol. 182:6027-6035.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6027-6035
-
-
Artsimovitch, I.1
Svetlov, V.2
Anthony, L.3
Burgess, R.R.4
Landick, R.5
-
3
-
-
0027536870
-
Transcript cleavage factors from Escherichia coli
-
Borukhov, S., V. Sagitov, and A. Goldfarb. 1993. Transcript cleavage factors from Escherichia coli. Cell 72:459-466.
-
(1993)
Cell
, vol.72
, pp. 459-466
-
-
Borukhov, S.1
Sagitov, V.2
Goldfarb, A.3
-
4
-
-
79551477738
-
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation
-
Chumsakul, O., et al. 2010. Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res. 39:414-428.
-
(2010)
Nucleic Acids Res
, vol.39
, pp. 414-428
-
-
Chumsakul, O.1
-
5
-
-
22144442117
-
The NusA:RNA polymerase ratio is increased at sites of rRNA synthesis in Bacillus subtilis
-
Davies, K. M., A. J. Dedman, S. van Horck, and P. J. Lewis. 2005. The NusA:RNA polymerase ratio is increased at sites of rRNA synthesis in Bacillus subtilis. Mol. Microbiol. 57:366-379.
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 366-379
-
-
Davies, K.M.1
Dedman, A.J.2
van Horck, S.3
Lewis, P.J.4
-
6
-
-
78650862144
-
Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex
-
Deighan, P., C. Pukhrambam, B. E. Nickels, and A. Hochschild. 2011. Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex. Genes Dev. 25:77-88.
-
(2011)
Genes Dev
, vol.25
, pp. 77-88
-
-
Deighan, P.1
Pukhrambam, C.2
Nickels, B.E.3
Hochschild, A.4
-
7
-
-
33744752145
-
Subcellular partitioning of transcription factors in Bacillus subtilis
-
Doherty, G. P., D. H. Meredith, and P. J. Lewis. 2006. Subcellular partitioning of transcription factors in Bacillus subtilis. J. Bacteriol. 188:4101-4110.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4101-4110
-
-
Doherty, G.P.1
Meredith, D.H.2
Lewis, P.J.3
-
8
-
-
0027761137
-
Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription
-
Erie, D. A., O. Hajiseyedjavadi, M. C. Young, and P. H. von Hippel. 1993. Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. Science 262:867-873.
-
(1993)
Science
, vol.262
, pp. 867-873
-
-
Erie, D.A.1
Hajiseyedjavadi, O.2
Young, M.C.3
von Hippel, P.H.4
-
9
-
-
0037073048
-
Promoting elongation with transcript cleavage stimulatory factors
-
Fish, R. N., and C. M. Kane. 2002. Promoting elongation with transcript cleavage stimulatory factors. Biochim. Biophys. Acta 1577:287-307.
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 287-307
-
-
Fish, R.N.1
Kane, C.M.2
-
10
-
-
0025744584
-
Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex
-
Gill, S. C., S. E. Weitzel, and P. H. von Hippel. 1991. Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex. J. Mol. Biol. 220:307-324.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 307-324
-
-
Gill, S.C.1
Weitzel, S.E.2
von Hippel, P.H.3
-
11
-
-
40549146192
-
Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation
-
Hatoum, A., and J. Roberts. 2008. Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation. Mol. Microbiol. 68:17-28.
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 17-28
-
-
Hatoum, A.1
Roberts, J.2
-
12
-
-
37449013345
-
Gene-specific regulation by a transcript cleavage factor: facilitating promoter escape
-
Hochschild, A. 2007. Gene-specific regulation by a transcript cleavage factor: facilitating promoter escape. J. Bacteriol. 189:8769-8771.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8769-8771
-
-
Hochschild, A.1
-
13
-
-
0029614716
-
Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro
-
Hsu, L. M., N. V. Vo, and M. J. Chamberlin. 1995. Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro. Proc. Natl. Acad. Sci. U. S. A. 92:11588-11592.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 11588-11592
-
-
Hsu, L.M.1
Vo, N.V.2
Chamberlin, M.J.3
-
14
-
-
0032764518
-
Global transposon mutagenesis and a minimal Mycoplasma genome
-
Hutchison, C. A., et al. 1999. Global transposon mutagenesis and a minimal Mycoplasma genome. Science 286:2165-2169.
-
(1999)
Science
, vol.286
, pp. 2165-2169
-
-
Hutchison, C.A.1
-
15
-
-
78049383811
-
RNA polymerase trafficking in Bacillus subtilis cells
-
Ishikawa, S., T. Oshima, K. Kurokawa, Y. Kusuya, and N. Ogasawara. 2010. RNA polymerase trafficking in Bacillus subtilis cells. J. Bacteriol. 192:5778- 5787.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 5778-5787
-
-
Ishikawa, S.1
Oshima, T.2
Kurokawa, K.3
Kusuya, Y.4
Ogasawara, N.5
-
16
-
-
33744479995
-
A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis
-
Ishikawa, S., Y. Kawai, K. Hiramatsu, M. Kuwano, and N. Ogasawara. 2006. A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis. Mol. Microbiol. 60: 1364-1380.
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 1364-1380
-
-
Ishikawa, S.1
Kawai, Y.2
Hiramatsu, K.3
Kuwano, M.4
Ogasawara, N.5
-
17
-
-
38449109857
-
Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method
-
Ishikawa, S., et al. 2007. Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. DNA Res. 14:155-168.
-
(2007)
DNA Res
, vol.14
, pp. 155-168
-
-
Ishikawa, S.1
-
18
-
-
0034725870
-
A structural model of transcription elongation
-
Korzheva, N., et al. 2000. A structural model of transcription elongation. Science 289:619-625.
-
(2000)
Science
, vol.289
, pp. 619-625
-
-
Korzheva, N.1
-
19
-
-
0032548820
-
Distinct functions of N and C-terminal domains of GreA, an Escherichia coli transcript cleavage factor
-
Koulich, D., V. Nikiforov, and S. Borukhov. 1998. Distinct functions of N and C-terminal domains of GreA, an Escherichia coli transcript cleavage factor. J. Mol. Biol. 276:379-389.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 379-389
-
-
Koulich, D.1
Nikiforov, V.2
Borukhov, S.3
-
20
-
-
0346243938
-
Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase
-
Laptenko, O., J. Lee, I. Lomakin, and S. Borukhov. 2003. Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase. EMBO J. 22:6322-6334.
-
(2003)
EMBO J
, vol.22
, pp. 6322-6334
-
-
Laptenko, O.1
Lee, J.2
Lomakin, I.3
Borukhov, S.4
-
21
-
-
0034507953
-
Function of transcription cleavage factors GreA and GreB at a regulatory pause site
-
Marr, M. T., and J. W. Roberts. 2000. Function of transcription cleavage factors GreA and GreB at a regulatory pause site. Mol. Cell 6:1275-1285.
-
(2000)
Mol. Cell
, vol.6
, pp. 1275-1285
-
-
Marr, M.T.1
Roberts, J.W.2
-
22
-
-
58149312711
-
Regulator trafficking on bacterial transcription units in vivo
-
Mooney, R. A., et al. 2009. Regulator trafficking on bacterial transcription units in vivo. Mol. Cell 33:97-108.
-
(2009)
Mol. Cell
, vol.33
, pp. 97-108
-
-
Mooney, R.A.1
-
23
-
-
0036855348
-
Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis
-
Morimoto, T., et al. 2002. Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis. Microbiology 148:3539-3552.
-
(2002)
Microbiology
, vol.148
, pp. 3539-3552
-
-
Morimoto, T.1
-
24
-
-
0034669398
-
Suppression of temperature-sensitive sporulation mutation in the Bacillus subtilis sigA gene by rpoB mutation
-
Nanamiya, H., N. Fugono, K. Asai, R. H. Doi, and F. Kawamura. 2000. Suppression of temperature-sensitive sporulation mutation in the Bacillus subtilis sigA gene by rpoB mutation. FEMS Microbiol. Lett. 192:237-241.
-
(2000)
FEMS Microbiol. Lett.
, vol.192
, pp. 237-241
-
-
Nanamiya, H.1
Fugono, N.2
Asai, K.3
Doi, R.H.4
Kawamura, F.5
-
25
-
-
4043135220
-
Regulation of RNA polymerase through the secondary channel
-
Nickels, B. E., and A. Hochschild. 2004. Regulation of RNA polymerase through the secondary channel. Cell 118:281-284.
-
(2004)
Cell
, vol.118
, pp. 281-284
-
-
Nickels, B.E.1
Hochschild, A.2
-
26
-
-
0035987110
-
Rhizobium tropici genes involved in free-living salt tolerance are required for the establishment of efficient nitrogen-fixing symbiosis with Phaseolus vulgaris
-
Nogales, J., et al. 2002. Rhizobium tropici genes involved in free-living salt tolerance are required for the establishment of efficient nitrogen-fixing symbiosis with Phaseolus vulgaris. Mol. Plant-Microbe Interact. 15:225-232.
-
(2002)
Mol. Plant-Microbe Interact.
, vol.15
, pp. 225-232
-
-
Nogales, J.1
-
27
-
-
0033597378
-
Transcription elongation: structural basis and mechanisms
-
Nudler, E. 1999. Transcription elongation: structural basis and mechanisms. J. Mol. Biol. 288:1-12.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 1-12
-
-
Nudler, E.1
-
28
-
-
0043244877
-
Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase
-
Opalka, N., et al. 2003. Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase. Cell 114:335-345.
-
(2003)
Cell
, vol.114
, pp. 335-345
-
-
Opalka, N.1
-
29
-
-
77958578564
-
A backtrack-inducing sequence is an essential component of Escherichia coli σ(70)-dependent promoter-proximal pausing
-
Perdue, S. A., and J. W. Roberts. 2010. A backtrack-inducing sequence is an essential component of Escherichia coli σ(70)-dependent promoter-proximal pausing. Mol. Microbiol. 78:636-650.
-
(2010)
Mol. Microbiol.
, vol.78
, pp. 636-650
-
-
Perdue, S.A.1
Roberts, J.W.2
-
30
-
-
33751534830
-
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting
-
Reppas, N. B., J. T. Wade, G. M. Church, and K. Struhl. 2006. The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol. Cell 24:747-757.
-
(2006)
Mol. Cell
, vol.24
, pp. 747-757
-
-
Reppas, N.B.1
Wade, J.T.2
Church, G.M.3
Struhl, K.4
-
31
-
-
77950998789
-
Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability
-
Sigurdsson, S., A. B. Dirac-Svejstrup, and J. Q. Svejstrup. 2010. Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability. Mol. Cell 38:202-210.
-
(2010)
Mol. Cell
, vol.38
, pp. 202-210
-
-
Sigurdsson, S.1
Dirac-Svejstrup, A.B.2
Svejstrup, J.Q.3
-
32
-
-
0347994909
-
Donation of catalytic residues to RNA polymerase active center by transcription factor Gre
-
Sosunova, E., et al. 2003. Donation of catalytic residues to RNA polymerase active center by transcription factor Gre. Proc. Natl. Acad. Sci. U. S. A. 100:15469-15474.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 15469-15474
-
-
Sosunova, E.1
-
33
-
-
0028840106
-
Crystal structure of the GreA transcript cleavage factor from Escherichia coli
-
Stebbins, C. E., et al. 1995. Crystal structure of the GreA transcript cleavage factor from Escherichia coli. Nature 373:636-640.
-
(1995)
Nature
, vol.373
, pp. 636-640
-
-
Stebbins, C.E.1
-
34
-
-
72149085717
-
Early transcriptional arrest at Escherichia coli rplN and ompX promoters
-
Stepanova, E., M. Wang, K. Severinov, and S. Borukhov. 2009. Early transcriptional arrest at Escherichia coli rplN and ompX promoters. J. Biol. Chem. 284:35702-35713.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 35702-35713
-
-
Stepanova, E.1
Wang, M.2
Severinov, K.3
Borukhov, S.4
-
35
-
-
37449029179
-
Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
-
Stepanova, E., et al. 2007. Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro. J. Bacteriol. 189: 8772-8785.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8772-8785
-
-
Stepanova, E.1
-
36
-
-
33645465073
-
A pathway branching in transcription initiation in Escherichia coli
-
Susa, M., T. Kubori, and N. Shimamoto. 2006. A pathway branching in transcription initiation in Escherichia coli. Mol. Microbiol. 59:1807-1817.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1807-1817
-
-
Susa, M.1
Kubori, T.2
Shimamoto, N.3
-
37
-
-
0034671841
-
GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming
-
Toulme, F., et al. 2000. GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming. EMBO J. 19:6853- 6859.
-
(2000)
EMBO J
, vol.19
, pp. 6853-6859
-
-
Toulme, F.1
-
38
-
-
64049096202
-
Differential binding profiles of StpA in wild-type and hns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis
-
Uyar, E., et al. 2009. Differential binding profiles of StpA in wild-type and hns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis. J. Bacteriol. 191:2388-2391.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2388-2391
-
-
Uyar, E.1
-
39
-
-
35748963229
-
The carboxy-terminal coiled-coil of the RNA polymerase β-subunit is the main binding site for Gre factors
-
Vassylyeva, M. N., et al. 2007. The carboxy-terminal coiled-coil of the RNA polymerase (-subunit is the main binding site for Gre factors. EMBO Rep. 8:1038-1043.
-
(2007)
EMBO Rep
, vol.8
, pp. 1038-1043
-
-
Vassylyeva, M.N.1
-
40
-
-
4444384345
-
Isolation of saltsensitive mutants from Sinorhizobium meliloti and characterization of genes involved in salt tolerance
-
Wei, W., J. Jiang, X. Li, L. Wang, and S. S. Yang. 2004. Isolation of saltsensitive mutants from Sinorhizobium meliloti and characterization of genes involved in salt tolerance. Lett. Appl. Microbiol. 39:278-283.
-
(2004)
Lett. Appl. Microbiol.
, vol.39
, pp. 278-283
-
-
Wei, W.1
Jiang, J.2
Li, X.3
Wang, L.4
Yang, S.S.5
-
41
-
-
0026542923
-
Mechanism of initiation of transcription by Bacillus subtilis RNA polymerase at several promoters
-
Whipple, F. W., and A. L. Sonenshein. 1992. Mechanism of initiation of transcription by Bacillus subtilis RNA polymerase at several promoters. J. Mol. Biol. 223:399-414.
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 399-414
-
-
Whipple, F.W.1
Sonenshein, A.L.2
-
42
-
-
69949141607
-
The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA
-
Yang, X., et al. 2009. The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA. EMBO Rep. 10: 997-1002.
-
(2009)
EMBO Rep
, vol.10
, pp. 997-1002
-
-
Yang, X.1
|