메뉴 건너뛰기




Volumn 192, Issue 21, 2010, Pages 5778-5787

RNA polymerase trafficking in Bacillus subtilis cells

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE; PROTEIN BINDING;

EID: 78049383811     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00489-10     Document Type: Article
Times cited : (14)

References (34)
  • 1
    • 0033765116 scopus 로고    scopus 로고
    • RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro
    • Artsimovitch, I., V. Svetlov, L. Anthony, R. R. Burgess, and R. Landick. 2000. RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro. J. Bacteriol. 182:6027-6035.
    • (2000) J. Bacteriol. , vol.182 , pp. 6027-6035
    • Artsimovitch, I.1    Svetlov, V.2    Anthony, L.3    Burgess, R.R.4    Landick, R.5
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 57:289-300.
    • (1995) J. R. Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 33748767376 scopus 로고    scopus 로고
    • Rho-dependent terminators and transcription termination
    • Ciampi, M. S. 2006. Rho-dependent terminators and transcription termination. Microbiology 152:2515-2528.
    • (2006) Microbiology , vol.152 , pp. 2515-2528
    • Ciampi, M.S.1
  • 5
    • 84936916896 scopus 로고
    • Robust locally weighted regression and smoothing scatterplots
    • Cleveland, W. S. 1979. Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc. 74:829-836.
    • (1979) J. Am. Stat. Assoc. , vol.74 , pp. 829-836
    • Cleveland, W.S.1
  • 6
    • 0023657073 scopus 로고
    • Effect of the delta subunit of Bacillus subtilis RNA polymerase on initiation of RNA synthesis at two bacteriophage phi 29 promoters
    • Dobinson, K. F., and G. B. Spiegelman. 1987. Effect of the delta subunit of Bacillus subtilis RNA polymerase on initiation of RNA synthesis at two bacteriophage phi 29 promoters. Biochemistry 26:8206-8213.
    • (1987) Biochemistry , vol.26 , pp. 8206-8213
    • Dobinson, K.F.1    Spiegelman, G.B.2
  • 7
    • 0025744584 scopus 로고
    • Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex
    • Gill, S. C., S. E. Weitzel, and P. H. von Hippel. 1991. Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex. J. Mol. Biol. 220:307-324.
    • (1991) J. Mol. Biol. , vol.220 , pp. 307-324
    • Gill, S.C.1    Weitzel, S.E.2    Von Hippel, P.H.3
  • 8
    • 0019480456 scopus 로고
    • Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription
    • Greenblatt, J., and J. Li. 1981. Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription. Cell 24:421-428.
    • (1981) Cell , vol.24 , pp. 421-428
    • Greenblatt, J.1    Li, J.2
  • 9
    • 3843118724 scopus 로고    scopus 로고
    • Kinetic analysis of tRNA-directed transcription antitermination of the Bacillus subtilis glyQS gene in vitro
    • Grundy, F. J., and T. M. Henkin. 2004. Kinetic analysis of tRNA-directed transcription antitermination of the Bacillus subtilis glyQS gene in vitro. J. Bacteriol. 186:5392-5399.
    • (2004) J. Bacteriol. , vol.186 , pp. 5392-5399
    • Grundy, F.J.1    Henkin, T.M.2
  • 10
    • 34447098370 scopus 로고    scopus 로고
    • A chromatin landmark and transcription initiation at most promoters in human cells
    • Guenther, M. G., S. S. Levine, L. A. Boyer, R. Jaenisch, and R. A. Young. 2007. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88.
    • (2007) Cell , vol.130 , pp. 77-88
    • Guenther, M.G.1    Levine, S.S.2    Boyer, L.A.3    Jaenisch, R.4    Young, R.A.5
  • 11
    • 40549146192 scopus 로고    scopus 로고
    • Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation
    • Hatoum, A., and J. Roberts. 2008. Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation. Mol. Microbiol. 68:17-28.
    • (2008) Mol. Microbiol. , vol.68 , pp. 17-28
    • Hatoum, A.1    Roberts, J.2
  • 12
    • 0035984639 scopus 로고    scopus 로고
    • Regulation by transcription attenuation in bacteria: How RNA provides instructions for transcription termination/ antitermination decisions
    • Henkin, T. M., and C. Yanofsky. 2002. Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/ antitermination decisions. Bioessays 24:700-707.
    • (2002) Bioessays , vol.24 , pp. 700-707
    • Henkin, T.M.1    Yanofsky, C.2
  • 13
    • 33747856481 scopus 로고    scopus 로고
    • Transcript mapping with high-density oligonucleotide tiling arrays
    • Huber, W., J. Toedling, and L. M. Steinmetz. 2006. Transcript mapping with high-density oligonucleotide tiling arrays. Bioinformatics 22:1963-1970.
    • (2006) Bioinformatics , vol.22 , pp. 1963-1970
    • Huber, W.1    Toedling, J.2    Steinmetz, L.M.3
  • 14
    • 0032904686 scopus 로고    scopus 로고
    • Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis
    • Ingham, C. J., J. Dennis, and P. A. Furneaux. 1999. Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis. Mol. Microbiol. 31:651-663.
    • (1999) Mol. Microbiol. , vol.31 , pp. 651-663
    • Ingham, C.J.1    Dennis, J.2    Furneaux, P.A.3
  • 15
    • 33744479995 scopus 로고    scopus 로고
    • A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis
    • DOI 10.1111/j.1365-2958.2006.05184.x
    • Ishikawa, S., Y. Kawai, K. Hiramatsu, M. Kuwano, and N. Ogasawara. 2006. A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis. Mol. Microbiol. 60: 1364-1380. (Pubitemid 43801431)
    • (2006) Molecular Microbiology , vol.60 , Issue.6 , pp. 1364-1380
    • Ishikawa, S.1    Kawai, Y.2    Hiramatsu, K.3    Kuwano, M.4    Ogasawara, N.5
  • 16
    • 38449109857 scopus 로고    scopus 로고
    • Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method
    • Ishikawa, S., Y. Ogura, M. Yoshimura, H. Okumura, E. Cho, Y. Kawai, K. Kurokawa, T. Oshima, and N. Ogasawara. 2007. Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. DNA Res. 14:155-168.
    • (2007) DNA Res. , vol.14 , pp. 155-168
    • Ishikawa, S.1    Ogura, Y.2    Yoshimura, M.3    Okumura, H.4    Cho, E.5    Kawai, Y.6    Kurokawa, K.7    Oshima, T.8    Ogasawara, N.9
  • 18
    • 34248997589 scopus 로고    scopus 로고
    • Environmental regulation operating at the promoter clearance step of bacterial transcription
    • Laishram, R. S., and J. Gowrishankar. 2007. Environmental regulation operating at the promoter clearance step of bacterial transcription. Genes Dev. 21:1258-1272.
    • (2007) Genes Dev. , vol.21 , pp. 1258-1272
    • Laishram, R.S.1    Gowrishankar, J.2
  • 19
    • 0038210214 scopus 로고    scopus 로고
    • Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
    • Mandal, M., B. Boese, J. E. Barrick, W. C. Winkler, and R. R. Breaker. 2003. Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113:577-586.
    • (2003) Cell , vol.113 , pp. 577-586
    • Mandal, M.1    Boese, B.2    Barrick, J.E.3    Winkler, W.C.4    Breaker, R.R.5
  • 20
    • 0021891874 scopus 로고
    • Mechanism and control of transcription initiation in prokaryotes
    • McClure, W. R. 1985. Mechanism and control of transcription initiation in prokaryotes. Annu. Rev. Biochem. 54:171-204.
    • (1985) Annu. Rev. Biochem. , vol.54 , pp. 171-204
    • McClure, W.R.1
  • 23
    • 0034682813 scopus 로고    scopus 로고
    • Dissection of two hall-marks of the open promoter complex by mutation in an RNA polymerase core subunit
    • Nechaev, S., M. Chlenov, and K. Severinov. 2000. Dissection of two hall-marks of the open promoter complex by mutation in an RNA polymerase core subunit. J. Biol. Chem. 275:25516-25522.
    • (2000) J. Biol. Chem. , vol.275 , pp. 25516-25522
    • Nechaev, S.1    Chlenov, M.2    Severinov, K.3
  • 25
    • 17044399754 scopus 로고    scopus 로고
    • Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
    • Radonjic, M., J. C. Andrau, P. Lijnzaad, P. Kemmeren, T. T. Kockelkorn, D. van Leenen, N. L. van Berkum, and F. C. Holstege. 2005. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol. Cell 18:171-183.
    • (2005) Mol. Cell , vol.18 , pp. 171-183
    • Radonjic, M.1    Andrau, J.C.2    Lijnzaad, P.3    Kemmeren, P.4    Kockelkorn, T.T.5    Van Leenen, D.6    Van Berkum, N.L.7    Holstege, F.C.8
  • 26
    • 33751534830 scopus 로고    scopus 로고
    • The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting
    • Reppas, N. B., J. T. Wade, G. M. Church, and K. Struhl. 2006. The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol. Cell 24:747-757.
    • (2006) Mol. Cell , vol.24 , pp. 747-757
    • Reppas, N.B.1    Wade, J.T.2    Church, G.M.3    Struhl, K.4
  • 27
    • 0027283354 scopus 로고
    • The main early and late promoters of Bacillus subtilis phage phi 29 form unstable open complexes with sigma A-RNA polymerase that are stabilized by DNA supercoiling
    • Rojo, F., B. Nuez, M. Mencia, and M. Salas. 1993. The main early and late promoters of Bacillus subtilis phage phi 29 form unstable open complexes with sigma A-RNA polymerase that are stabilized by DNA supercoiling. Nucleic Acids Res. 21:935-940.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 935-940
    • Rojo, F.1    Nuez, B.2    Mencia, M.3    Salas, M.4
  • 28
    • 70450222923 scopus 로고    scopus 로고
    • RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
    • Shahbabian, K., A. Jamalli, L. Zig, and H. Putzer. 2009. RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J. 28:3523-3533.
    • (2009) EMBO J. , vol.28 , pp. 3523-3533
    • Shahbabian, K.1    Jamalli, A.2    Zig, L.3    Putzer, H.4
  • 29
    • 44349116852 scopus 로고    scopus 로고
    • The transition from transcriptional initiation to elongation
    • Wade, J. T., and K. Struhl. 2008. The transition from transcriptional initiation to elongation. Curr. Opin. Genet. Dev. 18:130-136.
    • (2008) Curr. Opin. Genet. Dev. , vol.18 , pp. 130-136
    • Wade, J.T.1    Struhl, K.2
  • 30
    • 0026542923 scopus 로고
    • Mechanism of initiation of transcription by Bacillus subtilis RNA polymerase at several promoters
    • Whipple, F. W., and A. L. Sonenshein. 1992. Mechanism of initiation of transcription by Bacillus subtilis RNA polymerase at several promoters. J. Mol. Biol. 223:399-414.
    • (1992) J. Mol. Biol. , vol.223 , pp. 399-414
    • Whipple, F.W.1    Sonenshein, A.L.2
  • 31
    • 15944382675 scopus 로고    scopus 로고
    • The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
    • Wickiser, J. K., W. C. Winkler, R. R. Breaker, and D. M. Crothers. 2005. The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell 18:49-60.
    • (2005) Mol. Cell , vol.18 , pp. 49-60
    • Wickiser, J.K.1    Winkler, W.C.2    Breaker, R.R.3    Crothers, D.M.4
  • 32
    • 67650435786 scopus 로고    scopus 로고
    • Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation
    • Wu, L. J., S. Ishikawa, Y. Kawai, T. Oshima, N. Ogasawara, and J. Errington. 2009. Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation. EMBO J. 28:1940-1952.
    • (2009) EMBO J. , vol.28 , pp. 1940-1952
    • Wu, L.J.1    Ishikawa, S.2    Kawai, Y.3    Oshima, T.4    Ogasawara, N.5    Errington, J.6
  • 33
    • 0037143667 scopus 로고    scopus 로고
    • NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro
    • Yakhnin, A. V., and P. Babitzke. 2002. NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro. Proc. Natl. Acad. Sci. U. S. A. 99:11067-11072.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 11067-11072
    • Yakhnin, A.V.1    Babitzke, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.