Early transcriptional arrest at Escherichia coli rplN and ompX promoters

Journal of Biological Chemistry

Volumn 284, Issue 51, 2009, Pages 35702-35713

  Stepanova, Ekaterina ^a,b   Wang, Minshi ^a   Severinov, Konstantin ^b,c,d   Borukhov, Sergei ^a  

^a UMDNJ School of Osteopathic Medicine   (United States)

^b RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

^c RUTGERS UNIVERSITY   (United States)

^d INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROMOTERS; BACTERIAL TRANSCRIPTION; CLEAVAGE PRODUCTS; COMMON FEATURES; COMPLEX FORMATIONS; ELONGATION FACTOR; FOOTPRINTING; HYDROXYL RADICALS; IN-VITRO; IN-VIVO; INITIATION FACTORS; MOLECULAR MECHANISM; PROMOTER ELEMENTS; RNA POLYMERASE; TRANSCRIPTION INITIATION;

BACTERIOLOGY; ENZYMES; ESCHERICHIA COLI; NUCLEIC ACIDS; NUCLEOTIDES; RNA; SUBSTRATES;

TRANSCRIPTION;

ESCHERICHIA COLI PROTEIN; FERROUS ION; OUTER MEMBRANE PROTEIN; PERMANGANATE POTASSIUM; PROTEIN POMPX; PROTEIN PRPIN; RIBOSOME PROTEIN; RNA POLYMERASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GRE; UNCLASSIFIED DRUG;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; ENZYME SUBSTRATE; ENZYME SYNTHESIS; ESCHERICHIA COLI; GENE ACTIVITY; IN VITRO STUDY; IN VIVO STUDY; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE METABOLISM; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FOOTPRINTING; RNA CLEAVAGE; SIGNAL TRANSDUCTION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

BACTERIAL OUTER MEMBRANE PROTEINS; CELL-FREE SYSTEM; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HYDROLASES; PROMOTER REGIONS, GENETIC; RIBOSOMAL PROTEINS; RNA, BACTERIAL; SIGMA FACTOR; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; TRANSCRIPTIONAL ELONGATION FACTORS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 72149085717     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.053983     Document Type: Article

References (48)

1. Fish, R. N., and Kane, C. M. (2002) Biochim. Biophys. Acta 1577, 287-307
2. Borukhov, S., Lee, J., and Laptenko, O. (2005) Mol. Microbiol. 55, 1315-1324
3. Borukhov, S., Sagitov, V., and Goldfarb, A. (1993) Cell 72, 459-466
4. Hawley, D. K., Wiest, D. K., Holtz, M. S., and Wang, D. (1993) Cell Mol. Biol. Res. 39, 339-348
5. Erie, D. A., Hajiseyedjavadi, O., Young, M. C., and von Hippel, P. H. (1993) Science 262, 867-873
6. Thomas, M. J., Platas, A. A., and Hawley, D. K. (1998) Cell 93, 627-637
7. Hsu, L. M., Vo, N. V., and Chamberlin, M. J. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 11588-11592
8. Susa, M., Kubori, T., and Shimamoto, N. (2006) Mol. Microbiol. 59, 1807-1817
9. Hsu, L. M., Cobb, I. M., Ozmore, J. R., Khoo, M., Nahm, G., Xia, L., Bao, Y., and Ahn, C. (2006) Biochemistry 45, 8841-8854
10. Fousteri, M., and Mullenders, L. H. (2008) Cell Res. 18, 73-84
11. Toulmé, F., Mosrin-Huaman, C., Sparkowski, J., Das, A., Leng, M., and Rahmouni, A. R. (2000) EMBO J. 19, 6853-6859
12. Nudler, E., Mustaev, A., Lukhtanov, E., and Goldfarb, A. (1997) Cell 89, 33-41
13. Komissarova, N., and Kashlev, M. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 1755-1760
14. Reeder, T. C., and Hawley D. K. (1996) Cell 87, 767-777
15. Orlova, M., Newlands, J., Das, A., Goldfarb, A., and Borukhov, S. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 4596-4600
16. Rudd, M. D., Izban, M. G., and Luse, D. S. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 8057-8061
17. Weilbaecher, R. G., Awrey, D. E., Edwards, A. M., and Kane, C. M. (2003) J. Biol. Chem. 278, 24189-24199
18. Nudler, E. (1999) J. Mol. Biol. 288, 1-12
19. Zenkin, N., Yuzenkova, Y., and Severinov, K. (2006) Science 313, 518-520
20. Trautinger, B. W., Jaktaji, R. P., Rusakova, E., and Lloyd, R. G. (2005) Mol. Cell 19, 247-258
21. Mirkin, E. V., Castro Roa, D., Nudler, E., and Mirkin, S. M. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 7276-7281
22. Feng, G. H., Lee, D. N., Wang, D., Chan, C. L., and Landick, R. (1994) J. Biol. Chem. 269, 22282-22294
23. Stepanova, E., Lee, J., Ozerova, M., Semenova, E., Datsenko, K., Wanner, B. L., Severinov, K., and Borukhov, S. (2007) J. Bacteriol. 189, 8772-8785
24. Goldman, S. R., Ebright, R. H., and Nickels, B. E. (2009) Science 324, 927-928
25. Kapanidis, A. N., Margeat, E., Ho, S. O., Kortkhonjia, E., Weiss, S., and Ebright, R. H. (2006) Science 314, 1144-1147
26. Revyakin, A., Liu, C., Ebright, R. H., and Strick, T. R. (2006) Science 314, 1139-1143
27. Hsu, L. M. (2002) Biochim. Biophys. Acta 1577, 191-207
28. Laptenko, O., Lee, J., Lomakin, I., and Borukhov, S. (2003) EMBO J. 22, 6322-6334
29. Ko, D. C., Marr, M. T., Guo, J., and Roberts, J. W. (1998) Genes Dev. 12, 3276-3285
30. Barker, M. M., Gaal, T., Josaitis, C. A., and Gourse, R. L. (2001) J. Mol. Biol. 305, 673-688
31. Hernandez, V. J., and Bremer, H. (1990) J. Biol. Chem. 265, 11605-11614
32. Hatoum, A., and Roberts, J. (2008) Mol. Microbiol. 68, 17-28
33. Craig, M. L., Tsodikov, O. V., McQuade, K. L., Schlax, P. E., Jr., Capp, M. W., Saecker, R. M., and Record, M. T., Jr. (1998) J. Mol. Biol. 283, 741-756
34. Nechaev, S., and Adelman, K. (2008) Cell Cycle 7, 1539-1544
35. Kashlev, M., Nudler, E., Severinov, K., Borukhov, S., Komissarova, N., and Goldfarb, A. (1996) Methods Enzymol. 274, 326-334
36. Nudler, E., Avetissova, E., Markovtsov, V., and Goldfarb, A. (1996) Science 273, 211-217
37. Koulich, D., Orlova, M., Malhotra, A., Sali, A., Darst, S. A., and Borukhov, S. (1997) J. Biol. Chem. 272, 7201-7210
38. Loizos, N., and Darst, S. A. (1999) J. Biol. Chem. 274, 23378-23386
39. Surratt, C. K., Milan, S. C., and Chamberlin, M. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 7983-7987
40. Zhang, G., Campbell, E. A., Minakhin, L., Richter, C., Severinov, K., and Darst, S. A. (1999) Cell 98, 811-824
41. Mustaev, A., Kozlov, M., Markovtsov, V., Zaychikov, E., Denissova, L., and Goldfarb, A. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 6641-6645
42. Park, J. S., Marr, M. T., and Roberts, J. W. (2002) Cell 109, 757-767
43. Ring, B. Z., Yarnell, W. S., and Roberts, J. W. (1996) Cell 86, 485-493
44. Brodolin, K., Zenkin, N., Mustaev, A., Mamaeva, D., and Heumann, H. (2004) Nat. Struct. Mol. Biol. 11, 551-557
45. Nickels, B. E., Mukhopadhyay, J., Garrity, S. J., Ebright, R. H., and Hochschild, A. (2004) Nat. Struct. Mol. Biol. 11, 544-550
46. Mooney, R. A., and Landick, R. (2003) Genes Dev. 17, 2839-2851
47. Borukhov, S., Sagitov, V., Josaitis, C. A., Gourse, R. L., and Goldfarb, A. (1993) J. Biol. Chem. 268, 23477-23482
48. Epshtein, V., Toulme', F., Rahmouni, A. R., Borukhov, S., and Nudler, E. (2003) EMBO J. 22, 4719-4727