-
1
-
-
0031260520
-
Chromatin: The nucleosome unwrapped
-
Widom J. Chromatin: the nucleosome unwrapped. Curr Biol 1997; 7: R653-655.
-
(1997)
Curr Biol
, vol.7
, pp. 653-655
-
-
Widom, J.1
-
2
-
-
33745790132
-
Chromatin remodelling: The industrial revolution of DNA around histones
-
Saha A, Wittmeyer J and Cairns BR. Chromatin remodelling: the industrial revolution of DNA around histones. Nat Rev Mol Cell Biol 2006; 7: 437-447.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 437-447
-
-
Saha, A.1
Wittmeyer, J.2
Cairns, B.R.3
-
3
-
-
3542998667
-
Nucleosomes facilitate their own invasion
-
Li G and Widom J. Nucleosomes facilitate their own invasion. Nat Struct Mol Biol 2004; 11: 763-769.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 763-769
-
-
Li, G.1
Widom, J.2
-
4
-
-
18144366598
-
A fluorescence resonance energy transfer-based probe to monitor nucleosome structure
-
Lovullo D, Daniel D, Yodh J, Lohr D and Woodbury NW. A fluorescence resonance energy transfer-based probe to monitor nucleosome structure. Anal Biochem 2005; 341: 165-172.
-
(2005)
Anal Biochem
, vol.341
, pp. 165-172
-
-
Lovullo, D.1
Daniel, D.2
Yodh, J.3
Lohr, D.4
Woodbury, N.W.5
-
5
-
-
43149091474
-
Expedient placement of two fluorescent dyes for investigating dynamic DNA protein interactions in real time
-
Leuba SH, Anand SP, Harp JM and Khan SA. Expedient placement of two fluorescent dyes for investigating dynamic DNA protein interactions in real time. Chromosome Res 2008; 16: 451-467.
-
(2008)
Chromosome Res
, vol.16
, pp. 451-467
-
-
Leuba, S.H.1
Anand, S.P.2
Harp, J.M.3
Khan, S.A.4
-
6
-
-
72949099668
-
Dynamics of nucleosome remodelling by individual ACF complexes
-
Blosser TR, Yang JG, Stone MD, Narlikar GJ and Zhuang X. Dynamics of nucleosome remodelling by individual ACF complexes. Nature 2009; 462: 1022-1027.
-
(2009)
Nature
, vol.462
, pp. 1022-1027
-
-
Blosser, T.R.1
Yang, J.G.2
Stone, M.D.3
Narlikar, G.J.4
Zhuang, X.5
-
7
-
-
70350437772
-
Single-molecule fluorescence studies of nucleosome dynamics
-
Gurunathan K and Levitus M. Single-molecule fluorescence studies of nucleosome dynamics. Curr Pharm Biotechnol 2009; 10: 559-568.
-
(2009)
Curr Pharm Biotechnol
, vol.10
, pp. 559-568
-
-
Gurunathan, K.1
Levitus, M.2
-
8
-
-
35948933368
-
Single-pair FRET microscopy reveals mononucleosome dynamics
-
Koopmans WJ, Brehm A, Logie C, Schmidt T and van Noort J. Single-pair FRET microscopy reveals mononucleosome dynamics. J Fluoresc 2007; 17: 785-795.
-
(2007)
J Fluoresc
, vol.17
, pp. 785-795
-
-
Koopmans, W.J.1
Brehm, A.2
Logie, C.3
Schmidt, T.4
van Noort, J.5
-
9
-
-
37749035092
-
Sequencedependent variations associated with H2A/H2B depletion of nucleosomes
-
Kelbauskas L, Chan N, Bash R, DeBartolo P, Sun J, Woodbury N and Lohr D. Sequencedependent variations associated with H2A/H2B depletion of nucleosomes. Biophys J 2008; 94: 147-158.
-
(2008)
Biophys J
, vol.94
, pp. 147-158
-
-
Kelbauskas, L.1
Chan, N.2
Bash, R.3
Debartolo, P.4
Sun, J.5
Woodbury, N.6
Lohr, D.7
-
10
-
-
68949085807
-
Spfret using alternating excitation and FCS reveals progressive DNA unwrapping in nucleosomes
-
Koopmans WJ, Buning R, Schmidt T and van Noort J. spFRET using alternating excitation and FCS reveals progressive DNA unwrapping in nucleosomes. Biophys J 2009; 97: 195-204.
-
(2009)
Biophys J
, vol.97
, pp. 195-204
-
-
Koopmans, W.J.1
Buning, R.2
Schmidt, T.3
van Noort, J.4
-
11
-
-
0037823505
-
Chromatin fibers, one-at-a-time
-
Zlatanova J and Leuba SH. Chromatin fibers, one-at-a-time. J Mol Biol 2003; 331: 1-19.
-
(2003)
J Mol Biol
, vol.331
, pp. 1-19
-
-
Zlatanova, J.1
Leuba, S.H.2
-
12
-
-
0037133348
-
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA
-
Brower-Toland BD, Smith CL, Yeh RC, Lis JT, Peterson CL and Wang MD. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc Natl Acad Sci U S A 2002; 99: 1960-1965.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 1960-1965
-
-
Brower-Toland, B.D.1
Smith, C.L.2
Yeh, R.C.3
Lis, J.T.4
Peterson, C.L.5
Wang, M.D.6
-
13
-
-
10044241878
-
DNA-loop formation on nucleosomes shown by in situ scanning force microscopy of supercoiled DNA
-
Bussiek M, Toth K, Brun N and Langowski J. DNA-loop formation on nucleosomes shown by in situ scanning force microscopy of supercoiled DNA. J Mol Biol 2005; 345: 695-706.
-
(2005)
J Mol Biol
, vol.345
, pp. 695-706
-
-
Bussiek, M.1
Toth, K.2
Brun, N.3
Langowski, J.4
-
14
-
-
44149119036
-
Spontaneous access to DNA target sites in folded chromatin fibers
-
Poirier MG, Bussiek M, Langowski J and Widom J. Spontaneous access to DNA target sites in folded chromatin fibers. J Mol Biol 2008; 379: 772-786.
-
(2008)
J Mol Biol
, vol.379
, pp. 772-786
-
-
Poirier, M.G.1
Bussiek, M.2
Langowski, J.3
Widom, J.4
-
15
-
-
36348960704
-
Organisation of nucleosomal arrays reconstituted with repetitive African green monkey alpha-satellite DNA as analysed by atomic force microscopy
-
Bussiek M, Muller G, Waldeck W, Diekmann S and Langowski J. Organisation of nucleosomal arrays reconstituted with repetitive African green monkey alpha-satellite DNA as analysed by atomic force microscopy. Eur Biophys J 2007; 37: 81-93.
-
(2007)
Eur Biophys J
, vol.37
, pp. 81-93
-
-
Bussiek, M.1
Muller, G.2
Waldeck, W.3
Diekmann, S.4
Langowski, J.5
-
16
-
-
68949136888
-
The dynamics of individual nucleosomes controls the chromatin condensation pathway: Direct atomic force microscopy visualization of variant chromatin
-
Montel F, Menoni H, Castelnovo M, Bednar J, Dimitrov S, Angelov D and Faivre-Moskalenko C. The dynamics of individual nucleosomes controls the chromatin condensation pathway: direct atomic force microscopy visualization of variant chromatin. Biophys J 2009; 97: 544-553.
-
(2009)
Biophys J
, vol.97
, pp. 544-553
-
-
Montel, F.1
Menoni, H.2
Castelnovo, M.3
Bednar, J.4
Dimitrov, S.5
Angelov, D.6
Faivre-Moskalenko, C.7
-
17
-
-
67649099651
-
Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: Silatrane surface chemistry
-
Lyubchenko YL, Shlyakhtenko LS and Gall AA. Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: silatrane surface chemistry. Methods Mol Biol 2009; 543: 337-351.
-
(2009)
Methods Mol Biol
, vol.543
, pp. 337-351
-
-
Lyubchenko, Y.L.1
Shlyakhtenko, L.S.2
Gall, A.A.3
-
18
-
-
69049097259
-
-
[18] Shlyakhtenko LS, Lushnikov AY and Lyubchenko YL. Dynamics of nucleosomes revealed by time-lapse atomic force microscopy. Biochemistry 2009; 48: 7842- 7848.
-
-
-
-
19
-
-
77953541934
-
Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy
-
Suzuki Y, Higuchi Y, Hizume K, Yokokawa M, Yoshimura SH, Yoshikawa K and Takeyasu K. Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy. Ultramicroscopy 2010; 110: 682-688.
-
(2010)
Ultramicroscopy
, vol.110
, pp. 682-688
-
-
Suzuki, Y.1
Higuchi, Y.2
Hizume, K.3
Yokokawa, M.4
Yoshimura, S.H.5
Yoshikawa, K.6
Takeyasu, K.7
-
21
-
-
21244444606
-
Histone Octamer Instability under Single Molecule Experiment Conditions
-
Claudet C, Angelov D, Bouvet P, Dimitrov S and Bednar J. Histone Octamer Instability under Single Molecule Experiment Conditions. Journal of Biological Chemistry 2005; 280: 19958-19965.
-
(2005)
Journal of Biological Chemistry
, vol.280
, pp. 19958-19965
-
-
Claudet, C.1
Angelov, D.2
Bouvet, P.3
Dimitrov, S.4
Bednar, J.5
-
22
-
-
34347406965
-
The use ofQuantitative Agarose Gel Electrophoresis for rapid analysis of the integrity of proteinDNA complexes
-
Adkins NL, Hall JA and Georgel PT. The use ofQuantitative Agarose Gel Electrophoresis for rapid analysis of the integrity of proteinDNA complexes. Journal of Biochemical and Biophysical Methods 2007; 70: 721-726.
-
(2007)
Journal of Biochemical and Biophysical Methods
, vol.70
, pp. 721-726
-
-
Adkins, N.L.1
Hall, J.A.2
Georgel, P.T.3
-
23
-
-
0018781470
-
Structural changes of nucleosomes in lowsalt concentrations
-
Wu H-M, Dattagupta N, Hogan M and Crothers DM. Structural changes of nucleosomes in lowsalt concentrations. Biochemistry 1979; 18: 3960-3965.
-
(1979)
Biochemistry
, vol.18
, pp. 3960-3965
-
-
Wu, H.-M.1
Dattagupta, N.2
Hogan, M.3
Crothers, D.M.4
-
24
-
-
0022338697
-
Two phases of saltinduced nucleosome migration in nuclei
-
Watkins JF and Smerdon MJ. Nucleosome rearrangement in vitro. 1. Two phases of saltinduced nucleosome migration in nuclei. Biochemistry 1985; 24: 7279-7287.
-
(1985)
Biochemistry
, vol.24
, pp. 7279-7287
-
-
Watkins, J.F.1
-
25
-
-
70349334708
-
Nucleosome disassembly intermediates characterized by single-molecule FRET
-
Gansen A, Valeri A, Hauger F, Felekyan S, Kalinin S, Tith K, Langowski Jr and Seidel CAM. Nucleosome disassembly intermediates characterized by single-molecule FRET. Proceedings of the National Academy of Sciences 2009; 106: 15308-15313.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 15308-15313
-
-
Gansen, A.1
Valeri, A.2
Hauger, F.3
Felekyan, S.4
Kalinin, S.5
Tith, K.6
Langowski, Jr.7
Seidel, C.A.M.8
-
26
-
-
0027219373
-
Enhanced Gel Mobility Shift Assay for DNA-Binding Factors
-
Hassanain HH, Dai W and Gupta SL. Enhanced Gel Mobility Shift Assay for DNA-Binding Factors. Analytical Biochemistry 1993; 213: 162-167.
-
(1993)
Analytical Biochemistry
, vol.213
, pp. 162-167
-
-
Hassanain, H.H.1
Dai, W.2
Gupta, S.L.3
-
28
-
-
0035849650
-
Effects of bile salts on the solubility and activity of yeast alcohol dehydrogenase in AOT reversed micelles
-
Yang H, Kiserow DJ and McGown LB. Effects of bile salts on the solubility and activity of yeast alcohol dehydrogenase in AOT reversed micelles. Journal of Molecular Catalysis B: Enzymatic 2001; 14: 7-14.
-
(2001)
Journal of Molecular Catalysis B: Enzymatic
, vol.14
, pp. 7-14
-
-
Yang, H.1
Kiserow, D.J.2
McGown, L.B.3
-
29
-
-
0032541066
-
Stabilization of photosystem II reaction centers: Influence of bile salt detergents and low pH
-
Bernhard G and Hugo S. Stabilization of photosystem II reaction centers: influence of bile salt detergents and low pH. FEBS Letters 1998; 431: 161-166.
-
(1998)
FEBS Letters
, vol.431
, pp. 161-166
-
-
Bernhard, G.1
Hugo, S.2
-
30
-
-
0035798069
-
GSK-3 inhibition by adenoviral FRAT1 overexpression is neuroprotective and induces Tau dephosphorylation and [beta]-catenin stabilisation without elevation of glycogen synthase activity
-
Culbert AA, Brown MJ, Frame S, Hagen T, Cross DAE, Bax B and Reith AD. GSK-3 inhibition by adenoviral FRAT1 overexpression is neuroprotective and induces Tau dephosphorylation and [beta]-catenin stabilisation without elevation of glycogen synthase activity. FEBS Letters 2001; 507: 288-294.
-
(2001)
FEBS Letters
, vol.507
, pp. 288-294
-
-
Culbert, A.A.1
Brown, M.J.2
Frame, S.3
Hagen, T.4
Cross, D.A.E.5
Bax, B.6
Reith, A.D.7
-
31
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary PT and Widom J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. Journal of Molecular Biology 1998; 276: 19-42.
-
(1998)
Journal of Molecular Biology
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
32
-
-
69049097259
-
Dynamics of Nucleosomes Revealed by Time-Lapse Atomic Force Microscopy
-
Shlyakhtenko LS, Lushnikov AY and Lyubchenko YL. Dynamics of Nucleosomes Revealed by Time-Lapse Atomic Force Microscopy. Biochemistry 2009; 48: 7842-7848.
-
(2009)
Biochemistry
, vol.48
, pp. 7842-7848
-
-
Shlyakhtenko, L.S.1
Lushnikov, A.Y.2
Lyubchenko, Y.L.3
-
34
-
-
0037841390
-
Silatranebasedsurface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials
-
Shlyakhtenko LS, Gall AA, Filonov A, Cerovac Z, Lushnikov A and Lyubchenko YL. Silatranebasedsurface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials. Ultramicroscopy 2003; 97: 279-287.
-
(2003)
Ultramicroscopy
, vol.97
, pp. 279-287
-
-
Shlyakhtenko, L.S.1
Gall, A.A.2
Filonov, A.3
Cerovac, Z.4
Lushnikov, A.5
Lyubchenko, Y.L.6
-
35
-
-
59749090938
-
AFM for analysis of structure and dynamics of DNA and protein-DNA complexes
-
Lyubchenko YL and Shlyakhtenko LS. AFM for analysis of structure and dynamics of DNA and protein-DNA complexes. Methods 2009; 47: 206-213.
-
(2009)
Methods
, vol.47
, pp. 206-213
-
-
Lyubchenko, Y.L.1
Shlyakhtenko, L.S.2
-
36
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8B%. Resolution
-
Luger K, Mader A, Richmond R, Sargent D and Richmond T. Crystal structure of the nucleosome core particle at 2.8B%. resolution. Nature 1997; 389: 251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.2
Richmond, R.3
Sargent, D.4
Richmond, T.5
-
37
-
-
79551556820
-
The Role of Histone H4 Biotinylation in the Structure of Nucleosomes
-
Filenko NA, Kolar C, West JT, Smith SA, Hassan YI, Borgstahl GEO, Zempleni J and Lyubchenko YL. The Role of Histone H4 Biotinylation in the Structure of Nucleosomes. PLoS ONE 2011; 6: e16299.
-
(2011)
PLoS ONE
, vol.e16299
, pp. 6
-
-
Filenko, N.A.1
Kolar, C.2
West, J.T.3
Smith, S.A.4
Hassan, Y.I.5
Borgstahl, G.E.O.6
Zempleni, J.7
Lyubchenko, Y.L.8
-
38
-
-
68349125112
-
What controls nucleosome positions?
-
Segal E and Widom J. What controls nucleosome positions? Trends Genet 2009; 25: 335-343.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
39
-
-
33646792617
-
Micelle formation of bile salts and zwitterionic derivative as studied by two-dimensional NMR spectroscopy
-
Funasaki N, Fukuba M, Hattori T, Ishikawa S, Okuno T and Hirota S. Micelle formation of bile salts and zwitterionic derivative as studied by two-dimensional NMR spectroscopy. Chem Phys Lipids 2006; 142: 43-57.
-
(2006)
Chem Phys Lipids
, vol.142
, pp. 43-57
-
-
Funasaki, N.1
Fukuba, M.2
Hattori, T.3
Ishikawa, S.4
Okuno, T.5
Hirota, S.6
-
40
-
-
0037133348
-
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA
-
Brower-Toland BD, Smith CL, Yeh RC, Lis JT, Peterson CL and Wang MD. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proceedings of the National Academy of Sciences of the United States of America 2002; 99: 1960-1965.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 1960-1965
-
-
Brower-Toland, B.D.1
Smith, C.L.2
Yeh, R.C.3
Lis, J.T.4
Peterson, C.L.5
Wang, M.D.6
|