Diversity of Salmonella isolates using serotyping and multilocus sequence typing

Food Microbiology

Volumn 28, Issue 6, 2011, Pages 1182-1189

  Liu, Wei bing ^a   Liu, Bin ^a   Zhu, Xin na ^a   Yu, Shui jing ^a   Shi, Xian ming ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

Diversity; Multilocus sequence typing; Salmonella; Serotyping

Indexed keywords

ANIMAL; ANIMAL FOOD; ARTICLE; BIODIVERSITY; CHICKEN; CLASSIFICATION; EVALUATION; FOOD CONTROL; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; SALMONELLA; SEROTYPING;

ANIMAL FEED; ANIMALS; BIODIVERSITY; CHICKENS; FOOD MICROBIOLOGY; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; SALMONELLA; SEROTYPING;

SALMONELLA;

EID: 79957940311     PISSN: 07400020     EISSN: 10959998     Source Type: Journal    
DOI: 10.1016/j.fm.2011.04.001     Document Type: Article

References (47)

1. Aanensen D.M., Spratt B.G. The multilocus sequence typing network: mlst.net. Nucleic Acids Res 2005, 33:W728-W733.
2. Angulo F.J., Tippen S., Sharp D.J., Payne B.J., Collier C., Hill J.E., Barrett T.J., Clark R.M., Geldreich E.E., Donnell H.D., Swerdlow D.L. A community waterborne outbreak of salmonellosis and the effectiveness of a boil water order. Am J Public Health 1997, 87:580-584.
3. Ashbolt R., Dempsey K., Gregory J. Foodborne disease investigation across Australia: annual report of the OzFoodNet network, 2003. Commun Dis Intell 2004, 28:359-389.
4. Beltran P., Musser J.M., Helmuth R., Farmer J.J., Frerichs W.M., Wachsmuth I.K., Ferris K., McWhorter A.C., Wells J.G., Cravioto A., et al. Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium. Proc Natl Acad Sci USA 1988, 85:7753-7757.
5. Ben Saida N., Mhalla S., Bouzouia N., Boukadida J. Genotypic analysis of Salmonella enterica serovar typhi collected during two successive autumnal typhoid outbreaks in southeast Tunisia. Pathologie-biologie 2007, 55:336-339.
6. Bhatta D.R., Bangtrakulnonth A., Tishyadhigama P., Saroj S.D., Bandekar J.R., Hendriksen R.S., Kapadnis B.P. Serotyping, PCR, phage-typing and antibiotic sensitivity testing of Salmonella serovars isolated from urban drinking water supply systems of Nepal. Lett Appl Microbiol 2007, 44:588-594.
7. Chen K.W., Chen Y.C., Lo H.J., Odds F.C., Wang T.H., Lin C.Y., Li S.Y. Multilocus sequence typing for analyses of clonality of Candida albicans strains in Taiwan. J Clin Microbiol 2006, 44:2172-2178.
8. de la Cruz F., Davies J. Horizontal gene transfer and the origin of species: lessons from bacteria. Trends Microbiol 2000, 8:128-133.
9. Feil E.J., Li B.C., Aanensen D.M., Hanage W.P., Spratt B.G. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 2004, 186:1518-1530.
10. Friedman C., Torigian C., Shillam P., Hoffman R., Heltzel D., Beebe J., Malcolm G., DeWitt W., Hutwagner L., Griffin P. An outbreak of salmonellosis among children attending a reptile exhibit at a zoo. J Pediatr 1998, 132:802.
11. Galanis E., Lo Fo Wong D.M., Patrick M.E., Binsztein N., Cieslik A., Chalermchikit T., Aidara-Kane A., Ellis A., Angulo F.J., Wegener H.C. Web-based surveillance and global Salmonella distribution, 2000-2002. Emerg Infect Dis 2006, 12:381-388.
12. Gomez T.M., Motarjemi Y., Miyagawa S., Kaferstein F.K., Stohr K. Foodborne salmonellosis. World Health Stat Q 1997, 50:81-89.
13. Harbottle H., White D.G., McDermott P.F., Walker R.D., Zhao S. Comparison of multilocus sequence typing, pulsed-field gel electrophoresis, and antimicrobial susceptibility typing for characterization of Salmonella enterica serotype Newport isolates. J Clin Microbiol 2006, 44:2449-2457.
14. Harris I.T., Fedorka-Cray P.J., Gray J.T., Thomas L.A., Ferris K. Prevalence of Salmonella organisms in swine feed. J Am Vet Med Assoc 1997, 210:382-385.
15. Haubold B., Hudson R.R. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage analysis. Bioinformatics 2000, 16:847-848.
16. Hong L., Li-qing Z., Qing W. Analysis of the drug resistance and the extended spectrum beta-lactamases in Escherichia coli from blood. Zhejiang J Lab Med 2009, 7:17-19.
17. Hunter P.R., Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988, 26:2465-2466.
18. Jolley K.A., Feil E.J., Chan M.S., Maiden M.C. Sequence type analysis and recombinational tests (START). Bioinformatics 2001, 17:1230-1231.
19. Kidgell C., Reichard U., Wain J., Linz B., Torpdahl M., Dougan G., Achtman M. Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol 2002, 2:39-45.
20. Lindstedt B.A., Heir E., Vardund T., Kapperud G. A variation of the amplified-fragment length polymorphism (AFLP) technique using three restriction endonucleases, and assessment of the enzyme combination BglII-MfeI for AFLP analysis of Salmonella enterica subsp. enterica isolates. FEMS Microbiol Lett 2000, 189:19-24.
21. Litrup E., Torpdahl M., Nielsen E.M. Multilocus sequence typing performed on Campylobacter coli isolates from humans, broilers, pigs and cattle originating in Denmark. J Appl Microbiol 2007, 103:210-218.
22. Liu W.B., Chen J., Huang Y.Y., Liu B., Shi X.M. Serotype, genotype, and antimicrobial susceptibility profiles of Salmonella from chicken farms in shanghai. J Food Prot 2010, 73:562-567.
23. Mahon B.E., Ponka A., Hall W.N., Komatsu K., Dietrich S.E., Siitonen A., Cage G., Hayes P.S., Lambert-Fair M.A., Bean N.H., Griffin P.M., Slutsker L. An international outbreak of Salmonella infections caused by alfalfa sprouts grown from contaminated seeds. J Infect Dis 1997, 175:876-882.
24. Maiden M.C., Bygraves J.A., Feil E., Morelli G., Russell J.E., Urwin R., Zhang Q., Zhou J., Zurth K., Caugant D.A., Feavers I.M., Achtman M., Spratt B.G. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 1998, 95:3140-3145.
25. Matsui T., Matsuda M., Murayama O., Millar B.C., Moore J.E. recA genotyping of Salmonella enteritidis phage type 4 isolates by restriction fragment length polymorphism analysis. Lett Appl Microbiol 2001, 32:424-427.
26. Mead P.S., Slutsker L., Dietz V., McCaig L.F., Bresee J.S., Shapiro C., Griffin P.M., Tauxe R.V. Food-related illness and death in the United States. Emerg Infect Dis 1999, 5:607-625.
27. Murase T., Okitsu T., Suzuki R., Morozumi H., Matsushima A., Nakamura A., Yamai S. Evaluation of DNA fingerprinting by PFGE as an epidemiologic tool for Salmonella infections. Microbiol Immunol 1995, 39:673-676.
28. Nielsen R. Statistical tests of selective neutrality in the age of genomics. Heredity 2001, 86:641-647.
29. Olsen S.J., MacKinnon L.C., Goulding J.S., Bean N.H., Slutsker L. Surveillance for foodborne-disease outbreaks-United States, 1993-1997. MMWR CDC Surveill Summ 2000, 49:1-62.
30. Pang T., Levine M.M., Ivanoff B., Wain J., Finlay B.B. Typhoid fever - important issues still remain. Trends Microbiol 1998, 6:131-133.
31. Papadopoulou C., Carrique-Mas J.J., Davies R.H., Sayers A.R. Retrospective analysis of Salmonella isolates recovered from animal feed in Great Britain. Vet Rec 2009, 165:681-688.
32. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
33. Sambrook J., Russell D. Molecular Cloning: A Laboratory Manual 2001, CSHL Press.
34. Simonsen K.L., Churchill G.A., Aquadro C.F. Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 1995, 141:413-429.
35. Spratt B.G. Multilocus sequence typing: molecular typing of bacterial pathogens in an era of rapid DNA sequencing and the Internet. Curr Opin Microbiol 1999, 2:312-316.
36. Stone A., Shaffer M., Sautter R.L. Salmonella poona infection and surveillance in a neonatal nursery. Am J Infect Control 1993, 21:270-273.
37. Sukhnanand S., Alcaine S., Warnick L.D., Su W.L., Hof J., Craver M.P., McDonough P., Boor K.J., Wiedmann M. DNA sequence-based subtyping and evolutionary analysis of selected Salmonella enterica serotypes. J Clin Microbiol 2005, 43:3688-3698.
38. Swaminathan B., Gerner-Smidt P., Ng L.K., Lukinmaa S., Kam K.M., Rolando S., Gutierrez E.P., Binsztein N. Building PulseNet International: an interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases. Foodborne Pathog Dis 2006, 3:36-50.
39. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
40. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599.
41. Tankouo-Sandjong B., Sessitsch A., Liebana E., Kornschober C., Allerberger F., Hachler H., Bodrossy L. MLST-v, multilocus sequence typing based on virulence genes, for molecular typing of Salmonella enterica subsp. enterica serovars. J Microbiol Methods 2007, 69:23-36.
42. Torpdahl M., Skov M.N., Sandvang D., Baggesen D.L. Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism. J Microbiol Methods 2005, 63:173-184.
43. Urwin R., Maiden M.C.J. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol 2003, 11:479-487.
44. Vaillant V., de Valk H., Baron E., Ancelle T., Colin P., Delmas M.C., Dufour B., Pouillot R., Le Strat Y., Weinbreck P., Jougla E., Desenclos J.C. Foodborne infections in France. Foodborne Pathog Dis 2005, 2:221-232.
45. Velayudhan, V., http://mlst.ucc.ie/mlst/dbs/Senterica/GetTableInfo_html.
46. Voetsch A.C., Van Gilder T.J., Angulo F.J., Farley M.M., Shallow S., Marcus R., Cieslak P.R., Deneen V.C., Tauxe R.V. FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States. Clin Infect Dis 2004, 3(38 Suppl):S127-S134.
47. Wang L., Reeves P.R. The Escherichia coli O111 and Salmonella enterica O35 gene clusters: gene clusters encoding the same colitose-containing O antigen are highly conserved. J Bacteriol 2000, 182:5256-5261.