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Volumn 12, Issue 5, 2011, Pages 2901-2916

Dissimilar roles of the four conserved acidic residues in the thermal stability of poly(A)-specific ribonuclease

Author keywords

Aggregation kinetics; Magnesium ions; Poly(A) specific ribonuclease (PARN); Structural stability; Thermal aggregation; Two metal ion catalysis

Indexed keywords

MAGNESIUM ION; POLYADENYLIC ACID; POLYADENYLIC ACID SPECIFIC RIBONUCLEASE; RIBONUCLEASE; UNCLASSIFIED DRUG; EXORIBONUCLEASE; MAGNESIUM; POLY(A)-SPECIFIC RIBONUCLEASE;

EID: 79957830763     PISSN: None     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms12052901     Document Type: Article
Times cited : (11)

References (37)
  • 1
    • 0026019625 scopus 로고
    • Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism
    • Beese, L.S.; Steitz, T.A. Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism. EMBO J. 1991, 10, 25-33.
    • (1991) EMBO J , vol.10 , pp. 25-33
    • Beese, L.S.1    Steitz, T.A.2
  • 2
    • 33645962475 scopus 로고    scopus 로고
    • 2+-ion catalysis and substrate specificity
    • 2+-ion catalysis and substrate specificity. Mol. Cell 2006, 22, 5-13.
    • (2006) Mol. Cell , vol.22 , pp. 5-13
    • Yang, W.1    Lee, J.Y.2    Nowotny, M.3
  • 3
    • 0027184481 scopus 로고
    • A general two-metal-ion mechanism for catalytic RNA
    • Steitz, T.A.; Steitz, J.A. A general two-metal-ion mechanism for catalytic RNA. Proc. Natl. Acad. Sci. USA 1993, 90, 6498-6502.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6498-6502
    • Steitz, T.A.1    Steitz, J.A.2
  • 4
    • 55549123481 scopus 로고    scopus 로고
    • An equivalent metal ion in one- and two-metal-ion catalysis
    • Yang, W. An equivalent metal ion in one- and two-metal-ion catalysis. Nat. Struct. Mol. Biol. 2008, 15, 1228-1231.
    • (2008) Nat. Struct. Mol. Biol , vol.15 , pp. 1228-1231
    • Yang, W.1
  • 5
    • 63349104786 scopus 로고    scopus 로고
    • Effects of magnesium and related divalent metal ions in topoisomerase structure and function
    • Sissi, C.; Palumbo, M. Effects of magnesium and related divalent metal ions in topoisomerase structure and function. Nucleic Acids Res. 2009, 37, 702-711.
    • (2009) Nucleic Acids Res , vol.37 , pp. 702-711
    • Sissi, C.1    Palumbo, M.2
  • 6
    • 77956332252 scopus 로고    scopus 로고
    • One is enough: Insights into the two-metal ion nuclease mechanism from global analysis and computational studies
    • Dupureur, C.M. One is enough: Insights into the two-metal ion nuclease mechanism from global analysis and computational studies. Metallomics 2010, 2, 609-620.
    • (2010) Metallomics , vol.2 , pp. 609-620
    • Dupureur, C.M.1
  • 7
    • 17044403057 scopus 로고    scopus 로고
    • Type II restriction endonucleases: Structure and mechanism
    • Pingoud, A.; Fuxreiter, M.; Pingoud, V.; Wende, W. Type II restriction endonucleases: Structure and mechanism. Cell. Mol. Life Sci. 2005, 62, 685-707.
    • (2005) Cell. Mol. Life Sci , vol.62 , pp. 685-707
    • Pingoud, A.1    Fuxreiter, M.2    Pingoud, V.3    Wende, W.4
  • 8
    • 33646004109 scopus 로고    scopus 로고
    • Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release
    • Nowotny, M.; Yang, W. Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release. EMBO J. 2006, 25, 1924-1933.
    • (2006) EMBO J , vol.25 , pp. 1924-1933
    • Nowotny, M.1    Yang, W.2
  • 9
    • 0027468143 scopus 로고
    • Magnesium in the active site of Escherichia coli alkaline phosphatase is important for both structural stabilization and catalysis
    • Janeway, C.M.L.; Xu, X.; Murphy, J.E.; Chaidaroglou, A.; Kantrowitz, E.R. Magnesium in the active site of Escherichia coli alkaline phosphatase is important for both structural stabilization and catalysis. Biochemistry 1993, 32, 1601-1609.
    • (1993) Biochemistry , vol.32 , pp. 1601-1609
    • Janeway, C.M.L.1    Xu, X.2    Murphy, J.E.3    Chaidaroglou, A.4    Kantrowitz, E.R.5
  • 10
    • 0030460727 scopus 로고    scopus 로고
    • 2+ ion-proposal of a novel catalytic role for Glu48
    • 2+ ion-proposal of a novel catalytic role for Glu48. J. Biol. Chem. 1996, 271, 32729-32736.
    • (1996) J. Biol. Chem , vol.271 , pp. 32729-32736
    • Kanaya, S.1    Oobatake, M.2    Liu, Y.Y.3
  • 11
    • 0039940808 scopus 로고    scopus 로고
    • Control of the structural stability of the tubulin dimer by one high affinity bound magnesium ion at nucleotide N-site
    • Menendez, M.; Rivas, G.; Diaz, J.F.; Andreu, J.M. Control of the structural stability of the tubulin dimer by one high affinity bound magnesium ion at nucleotide N-site. J. Biol. Chem. 1998, 273, 167-176.
    • (1998) J. Biol. Chem , vol.273 , pp. 167-176
    • Menendez, M.1    Rivas, G.2    Diaz, J.F.3    Andreu, J.M.4
  • 12
    • 33847159852 scopus 로고    scopus 로고
    • Effect of magnesium ions on the thermal stability of human poly(A)-specific ribonuclease
    • Liu, W.F.; Zhang, A.; Cheng, Y.; Zhou, H.M.; Yan, Y.B. Effect of magnesium ions on the thermal stability of human poly(A)-specific ribonuclease. FEBS Lett. 2007, 581, 1047-1052.
    • (2007) FEBS Lett , vol.581 , pp. 1047-1052
    • Liu, W.F.1    Zhang, A.2    Cheng, Y.3    Zhou, H.M.4    Yan, Y.B.5
  • 13
    • 0035895362 scopus 로고    scopus 로고
    • The PD...(D/E)XK motif in restriction enzymes: A link between function and conformation
    • Dupureur, C.M.; Dominguez, M.A. The PD...(D/E)XK motif in restriction enzymes: A link between function and conformation. Biochemistry 2001, 40, 387-394.
    • (2001) Biochemistry , vol.40 , pp. 387-394
    • Dupureur, C.M.1    Dominguez, M.A.2
  • 14
    • 0025772751 scopus 로고
    • In vitro deadenylation of mammalian mRNA by a HeLa cell 3' exonuclease
    • Åström, J.; Åström, A.; Virtanen, A. In vitro deadenylation of mammalian mRNA by a HeLa cell 3' exonuclease. EMBO J. 1991, 10, 3067-3071.
    • (1991) EMBO J , vol.10 , pp. 3067-3071
    • Åström, J.1    Åström, A.2    Virtanen, A.3
  • 15
    • 0039535081 scopus 로고    scopus 로고
    • Poly(A) tail shortening by a mammalian poly(A)-specific 3'-exoribonuclease
    • Körner, C.G.; Wahle, E. Poly(A) tail shortening by a mammalian poly(A)-specific 3'-exoribonuclease. J. Biol. Chem. 1997, 272, 10448-10456.
    • (1997) J. Biol. Chem , vol.272 , pp. 10448-10456
    • Körner, C.G.1    Wahle, E.2
  • 16
    • 28644436520 scopus 로고    scopus 로고
    • Structural insight into poly(A) binding and catalytic mechanism of human PARN
    • Wu, M.S.; Reuter, M.; Lilie, H.; Liu, Y.Y.; Wahle, E.; Song, H.W. Structural insight into poly(A) binding and catalytic mechanism of human PARN. EMBO J. 2005, 24, 4082-4093.
    • (2005) EMBO J , vol.24 , pp. 4082-4093
    • Wu, M.S.1    Reuter, M.2    Lilie, H.3    Liu, Y.Y.4    Wahle, E.5    Song, H.W.6
  • 18
    • 10344253855 scopus 로고    scopus 로고
    • Coordination of divalent metal ions in the active site of poly(A)-specific ribonuclease
    • Ren, Y. G.; Kirsebom, L.A.; Virtanen, A. Coordination of divalent metal ions in the active site of poly(A)-specific ribonuclease. J. Biol. Chem. 2004, 279, 48702-48706.
    • (2004) J. Biol. Chem , vol.279 , pp. 48702-48706
    • Ren, Y.G.1    Kirsebom, L.A.2    Virtanen, A.3
  • 19
    • 33646435854 scopus 로고    scopus 로고
    • A nonradioactive assay for poly(A)-specific ribonuclease activity by methylene blue colorimetry
    • Cheng, Y.; Liu, W.-F.; Yan, Y.-B.; Zhou, H.-M. A nonradioactive assay for poly(A)-specific ribonuclease activity by methylene blue colorimetry. Protein Peptide Lett. 2006, 13, 125-128.
    • (2006) Protein Peptide Lett , vol.13 , pp. 125-128
    • Cheng, Y.1    Liu, W.-F.2    Yan, Y.-B.3    Zhou, H.-M.4
  • 20
    • 34247609928 scopus 로고    scopus 로고
    • Role of the RRM domain in the activity, structure and stability of poly(A)-specific ribonuclease
    • Zhang, A.; Liu, W.F.; Yan, Y.B. Role of the RRM domain in the activity, structure and stability of poly(A)-specific ribonuclease. Arch. Biochem. Biophys. 2007, 461, 255-262.
    • (2007) Arch. Biochem. Biophys , vol.461 , pp. 255-262
    • Zhang, A.1    Liu, W.F.2    Yan, Y.B.3
  • 21
    • 0036525843 scopus 로고    scopus 로고
    • Kinetics of protein aggregation. Quantitative estimation of the chaperone-like activity in test-systems based on suppression of protein aggregation
    • Kurganov, B.I. Kinetics of protein aggregation. Quantitative estimation of the chaperone-like activity in test-systems based on suppression of protein aggregation. Biochemistry (Moscow) 2002, 67, 409-422.
    • (2002) Biochemistry (Moscow) , vol.67 , pp. 409-422
    • Kurganov, B.I.1
  • 22
    • 0016394198 scopus 로고
    • Interpretation of the light scattering from long rods
    • Berne, B.J. Interpretation of the light scattering from long rods. J. Mol. Biol. 1974, 89, 755-758.
    • (1974) J. Mol. Biol , vol.89 , pp. 755-758
    • Berne, B.J.1
  • 23
    • 0034604553 scopus 로고    scopus 로고
    • A 54-kDa fragment of the poly(A)-specific ribonuclease is an oligomeric, processive, and cap-interacting poly(A)-specific 3' exonuclease
    • Martìnez, J.; Ren, Y.G.; Thuresson, A.C.; Hellma, U.; Åström, J.; Virtanen, A. A 54-kDa fragment of the poly(A)-specific ribonuclease is an oligomeric, processive, and cap-interacting poly(A)-specific 3' exonuclease. J. Biol. Chem. 2000, 275, 24222-24230.
    • (2000) J. Biol. Chem , vol.275 , pp. 24222-24230
    • Martìnez, J.1    Ren, Y.G.2    Thuresson, A.C.3    Hellma, U.4    Åström, J.5    Virtanen, A.6
  • 24
    • 0034581324 scopus 로고    scopus 로고
    • Folding and association of oligomeric and multimeric proteins
    • Jaenicke, R.; Lilie, H.; Matthews, C.R. Folding and association of oligomeric and multimeric proteins. Adv. Protein Chem. 2000, 53, 329-362.
    • (2000) Adv. Protein Chem , vol.53 , pp. 329-362
    • Jaenicke, R.1    Lilie, H.2    Matthews, C.R.3
  • 26
    • 65349090914 scopus 로고    scopus 로고
    • Conformational stability and multistate unfolding of poly(A)-specific ribonuclease (PARN)
    • He, G.J.; Zhang, A.; Liu, W.F.; Cheng, Y.; Yan, Y.B. Conformational stability and multistate unfolding of poly(A)-specific ribonuclease (PARN). FEBS J. 2009, 276, 2849-2860.
    • (2009) FEBS J , vol.276 , pp. 2849-2860
    • He, G.J.1    Zhang, A.2    Liu, W.F.3    Cheng, Y.4    Yan, Y.B.5
  • 28
    • 34447546524 scopus 로고    scopus 로고
    • The R3H domain stabilizes poly(A)-specific ribonuclease by stabilizing the RRM domain
    • Liu, W.F.; Zhang, A.; He, G.J.; Yan, Y.B. The R3H domain stabilizes poly(A)-specific ribonuclease by stabilizing the RRM domain. Biochem. Biophys. Res. Commun. 2007, 360, 846-851.
    • (2007) Biochem. Biophys. Res. Commun , vol.360 , pp. 846-851
    • Liu, W.F.1    Zhang, A.2    He, G.J.3    Yan, Y.B.4
  • 29
    • 58149527795 scopus 로고    scopus 로고
    • Allosteric regulation of human poly(A)-specific ribonuclease by cap and potassium ions
    • Liu, W.F.; Zhang, A.; Cheng, Y.; Zhou, H.M.; Yan, Y.B. Allosteric regulation of human poly(A)-specific ribonuclease by cap and potassium ions. Biochem. Biophys. Res. Commun. 2009, 379, 341-345.
    • (2009) Biochem. Biophys. Res. Commun , vol.379 , pp. 341-345
    • Liu, W.F.1    Zhang, A.2    Cheng, Y.3    Zhou, H.M.4    Yan, Y.B.5
  • 30
    • 67650091624 scopus 로고    scopus 로고
    • Inhibition of human poly(A)-specific ribonuclease (PARN) by purine nucleotides: Kinetic analysis
    • Balatsos, N.A.; Anastasakis, D.; Stathopoulos, C. Inhibition of human poly(A)-specific ribonuclease (PARN) by purine nucleotides: Kinetic analysis. J. Enzym. Inhib. Med. Chem. 2009, 24, 516-523.
    • (2009) J. Enzym. Inhib. Med. Chem , vol.24 , pp. 516-523
    • Balatsos, N.A.1    Anastasakis, D.2    Stathopoulos, C.3
  • 31
    • 0344413605 scopus 로고    scopus 로고
    • Heat-induced denaturation and aggregation of ovalbumin at neutral pH described by irreversible first-order kinetics
    • Weijers, M.; Barneveld, P.A.; Cohen Stuart, M.A.; Visschers, R.W. Heat-induced denaturation and aggregation of ovalbumin at neutral pH described by irreversible first-order kinetics. Protein Sci. 2003, 12, 2693-2703.
    • (2003) Protein Sci , vol.12 , pp. 2693-2703
    • Weijers, M.1    Barneveld, P.A.2    Cohen Stuart, M.A.3    Visschers, R.W.4
  • 32
    • 0035839035 scopus 로고    scopus 로고
    • Dependence on solution conditions of aggregation and amyloid formation by an SH3 domain
    • Zurdo, J.; Guijarro, J.I.; Jiménez, J.L.; Saibil, H.R.; Dobson, C.M. Dependence on solution conditions of aggregation and amyloid formation by an SH3 domain. J. Mol. Biol. 2001, 311, 325-340.
    • (2001) J. Mol. Biol , vol.311 , pp. 325-340
    • Zurdo, J.1    Guijarro, J.I.2    Jiménez, J.L.3    Saibil, H.R.4    Dobson, C.M.5
  • 33
    • 0037059069 scopus 로고    scopus 로고
    • Studies of the aggregation of mutant proteins in vitro provide insights into the genetics of amyloid diseases
    • Chiti, F.; Calamai, M.; Taddei, N.; Stefani, M.; Ramponi, G.; Dobson, C.M. Studies of the aggregation of mutant proteins in vitro provide insights into the genetics of amyloid diseases. Proc. Natl. Acad. Sci. USA 2002, 99, 16419-16426.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 16419-16426
    • Chiti, F.1    Calamai, M.2    Taddei, N.3    Stefani, M.4    Ramponi, G.5    Dobson, C.M.6
  • 34
    • 0042467550 scopus 로고    scopus 로고
    • Rationalization of the effects of mutations on peptide andprotein aggregation rates
    • Chiti, F.; Stefani, M.; Taddei, N.; Ramponi, G.; Dobson, C.M. Rationalization of the effects of mutations on peptide andprotein aggregation rates. Nature 2003, 424, 805-808.
    • (2003) Nature , vol.424 , pp. 805-808
    • Chiti, F.1    Stefani, M.2    Taddei, N.3    Ramponi, G.4    Dobson, C.M.5
  • 35
    • 33646177852 scopus 로고    scopus 로고
    • Oligomerization and aggregation of bovine pancreatic ribonuclease A: Characteristic events observed by FTIR spectroscopy
    • Yan, Y.B.; Zhang, J.; He, H.W.; Zhou, H.M. Oligomerization and aggregation of bovine pancreatic ribonuclease A: Characteristic events observed by FTIR spectroscopy. Biophys. J. 2006, 90, 2525-2533.
    • (2006) Biophys. J , vol.90 , pp. 2525-2533
    • Yan, Y.B.1    Zhang, J.2    He, H.W.3    Zhou, H.M.4
  • 36
    • 33845957838 scopus 로고    scopus 로고
    • Human pancreatitis-associated protein forms fibrillar aggregates with a native-like conformation
    • Ho, M.R.; Lou, Y.C.; Lin, W.C.; Lyu, P.C.; Huang, W.N.; Chen, C. Human pancreatitis-associated protein forms fibrillar aggregates with a native-like conformation. J. Biol. Chem. 2006, 281, 33566-33576.
    • (2006) J. Biol. Chem , vol.281 , pp. 33566-33576
    • Ho, M.R.1    Lou, Y.C.2    Lin, W.C.3    Lyu, P.C.4    Huang, W.N.5    Chen, C.6
  • 37
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248-252.
    • (1976) Anal. Biochem , vol.72 , pp. 248-252
    • Bradford, M.M.1


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