A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae

Journal of Genetics and Genomics

Volumn 38, Issue 5, 2011, Pages 209-216

  Chen, Jie ^a   Shi, Yongfeng ^a   Liu, Wenzheng ^a   Chai, Rongyao ^b   Fu, Yaping ^a   Zhuang, Jieyun ^a   Wu, Jianli ^a  

^a CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^b INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

Author keywords

Blast resistance gene; Magnaporthe oryzae; NBS LRR; Oryza sativa

Indexed keywords

MOLECULAR MARKER;

ALLELE; ARTICLE; BLAST RESISTANCE GENE; BREEDING; DISEASE RESISTANCE; FUNGUS; GENE; GENE OVEREXPRESSION; MAGNAPORTHE ORYZAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PID3 GENE; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS; RICE; RICE BLAST; TRANSGENIC PLANT;

ALLELES; AMINO ACID SEQUENCE; BREEDING; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DISEASE RESISTANCE; GENES, PLANT; GENETIC COMPLEMENTATION TEST; MAGNAPORTHE; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; ORYZA SATIVA; PHYLOGENY; PLANT DISEASES; PLANT PROTEINS; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

MAGNAPORTHE ORYZAE; ORYZA SATIVA;

EID: 79957550381     PISSN: 16738527     EISSN: 18735533     Source Type: Journal    
DOI: 10.1016/j.jgg.2011.03.010     Document Type: Article

References (42)

1. Ahn S.W. International collaboration on breeding for resistance to rice blast. Rice Blast Disease 1994, 137-153. CABI, Wallingford, UK. R.S. Zeigler, S.A. Leong, P.S. Teng (Eds.).
2. Ashikawa I., Hayashi N., Yamane H., Kanamori H., Wu J., Matsumoto T., Ono K., Yano M. Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance. Genetics 2008, 180:2267-2276.
3. Bai J., Pennill L.A., Ning J., Lee S.W., Ramalingam J., Webb C.A., Zhao B., Sun Q., Nelson J.C., Leach J.E., Hulbert S.H. Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res. 2002, 12:1871-1884.
4. Baker B., Zambryski P., Staskawicz B., Dinesh-Kumar S.P. Signalling in plant-microbe interactions. Science 1997, 276:726-733.
5. Belkhadir Y., Subramaniam R., Dangl J.L. Plant disease resistance protein signalling: NBS-LRR proteins and their partners. Curr. Opin. Plant Biol. 2004, 7:391-399.
6. Bent A.F. Plant disease resistance genes: function meets structure. Plant Cell 1996, 8:1757-1771.
7. Bonman J.M., Vergael de Dios T.I., Khin M.M. Physiological specialization of Pyricularia oryzae in the Philippines. Plant Dis. 1986, 70:767-769.
8. Bryan G.T., Wu K.S., Farrall L., Jia Y.L., Hershey H.P., McAdams S.A., Faulk K.N., Donaldson G.K., Tarchini R., Valent B. A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 2000, 12:2033-2045.
9. Chen X.W., Shang J.J., Chen D.X., Lei C.L., Zou Y., Zhai W.X., Liu G.Z., Xu J.C., Ling Z.Z., Cao G., Ma B.T., Wang Y.P., Zhao X.F., Li S.G., Zhu L.H. A B-lectin receptor kinase gene conferring rice blast resistance. Plant J. 2006, 46:794-804.
10. Couch B.C., Kohn L.M. A multilocus gene genealogy concordant with host preference indicates segregation of a new species Magnaporthe oryzae from M. grisea. Mycologia 2002, 94:683-693.
11. Dangl J.L., Jones J.D.G. Plant pathogens and integrated defence responses to infection. Nature 2001, 411:826-833.
12. Fukuoka S., Saka N., Koga H., Ono K., Shimizu T., Ebana K., Hayashi N., Takahashi A., Hirochika H., Okuno K., Yano M. Loss of function of a proline-containing protein confers durable disease resistance in rice. Science 2009, 325:998-1001.
13. Goff S.A., Ricke D., Lan T.-H., et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 2002, 296:92-100.
14. Hammond-Kosack K.E., Jones J.D.G. Plant disease resistance genes. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1997, 48:575-607.
15. Hayashi K., Yoshida H. Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter. Plant J. 2009, 57:413-425.
16. Hayashi K., Yoshida H., Ashikawa I. Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes. Theor. Appl. Genet. 2006, 113:251-260.
17. Hulbert S.H., Webb C.A., Smith S.M., Sun Q. Resistance gene complexes: evolution and utilization. Annu. Rev. Phytopathol. 2001, 39:285-312.
18. Jeung J.U., Kim B.R., Cho Y.C., Han S.S., Moon H.P., Lee Y.T., Jena K.K. A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice. Theor. Appl. Genet. 2007, 115:1163-1177.
19. Kumar S., Nei M., Dudley J., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform. 2008, 9:299-306.
20. Lee S.K., Song M.Y., Seo Y.S., Kim H.K., Ko S., Cao P.J., Suh J.P., Yi G., Roh J.H., Lee S., An G., Hahn T.R., Wang G.L., Ronald P., Jeon J.S. Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two CC-NB-LRR genes. Genetics 2009, 181:1627-1638.
21. Lin F., Chen S., Que Z.Q., Wang L., Liu X.Q., Pan Q.H. The blast resistance gene Pi37 encodes a nucleotide binding site-leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1. Genetics 2007, 177:1871-1880.
22. Liu J.L., Liu X.L., Dai L.Y., Wang G.L. Recent progress in elucidating the structure, function and evolution of disease resistance genes in plants. J. Genet. Genomics 2007, 34:765-776.
23. Liu X.Q., Lin F., Wang L., Pan Q.H. The in silico map-based cloning of Pi36, a rice coiled-coil-nucleotide-binding site-leucine-rich repeat gene that confers race-specific resistance to the blast fungus. Genetics 2007, 176:2541-2549.
24. Liu W.Q., Li X.X., Wang S.H., Duan Y.H., Wu J.-L. Research progress in blast resistance genes in rice. Hybrid Rice 2009, 24:1-7. (in Chinese with an English abstract).
25. Lu Y.J., Zheng K.L. A simple method for isolation of rice DNA. Chinese J. Rice Sci. 1992, 6:47-48. (in Chinese with an English abstract).
26. Martin G.B., Bogdanove A.J., Sessa G. Understanding the functions of plant disease resistance proteins. Annu. Rev. Plant Physiol. 2003, 54:23-61.
27. Meyers B.C., Shen K.A., Rohani P., Gaut B.S., Michelmore R.W. Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 1998, 10:1833-1846.
28. Meyers B.C., Dickerman A.W., Michelmore R.W., Sivaramakrishnan S., Sobral B.W., Young N.D. Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 1999, 20:317-332.
29. Murray M.G., Thompson W.F. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 1980, 8:4321-4325.
30. Okuyama Y., Kanzaki H., Abe A., Yoshida K., Tamiru M., Saitoh H., Fujibe T., Matsumura H., Shenton M., Galam D.C., Undan J., Ito A., Sone T., Terauchi R. A multi-faceted genomics approach allows the isolation of rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes. Plant J 2011, 10.1111/j.1365-313X.2011.04502.x.
31. Ou S.H. Rice Diseases 1985, Common Wealth Mycological Institute, Kew, UK. second ed.
32. Pan Q.L., Wendel J., Fluhr R. Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J. Mol. Evol. 2000, 50:203-213.
33. Qu S.H., Liu G.F., Zhou B., Bellizzi M., Zeng L.R., Dai L.Y., Han B., Wang G.L. The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 2006, 172:1901-1914.
34. Shang J.J., Tao Y., Chen X.W., Zhou Y., Lei C.L., Wang J., Li X.B., Zhao X.F., Zhang M.J., Lu Z.K., Xu J.C., Cheng Z.K., Wan J.M., Zhu L.H. Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site-leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes. Genetics 2009, 182:1303-1311.
35. van der Biezen E.A., Jones J.D.G. The NB-ARC domain: a novel signaling motif shared by plant resistance gene products and regulators of cell death in animals. Curr. Biol. 1998, 8:226-227.
36. van der Biezen E.A., Jones J.D.G. Plant disease resistance proteins and the gene-for-gene concept. Trends Biochem. Sci. 1998, 23:454-456.
37. Wang Z.X., Yano M., Yamanouch U., Iwamoto M., Monna L., Hayasaka H., Katayose Y., Sasaki T. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 1999, 19:55-64.
38. Wilson R.A., Talbot N.J. Under pressure: investigating the biology of plant infection by Magnaporthe oryzae. Nat. Rev. Microbiol. 2009, 7:185-195.
39. Wu J.L., Chai R.Y., Fan Y.Y., Li D.B., Zheng K.L., Leung H., Zhuang J.Y. Clustering of major genes conferring blast resistance in blast resistance rice cultivar Gumei 2. Rice Sci. 2004, 11:161-164.
40. Wu J.L., Fan Y.Y., Li D.B., Zheng K.L., Leung H., Zhuang J.Y. Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates. Theor. Appl. Genet. 2005, 111:50-56.
41. Zhou B., Qu S.H., Liu G.F., Dolan M., Sakai H., Lu G.D., Bellizzi M., Wang G.L. The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea. Mol. Plant-Microbe Interact. 2006, 11:1216-1228.
42. Zhu Z.G., Xiao H., Fu Y.P., Hu G.C., Yu Y.H., Si H.M., Zhang J.L., Sun Z.X. Construction of transgenic rice populations by inserting the maize transposon Ac/Ds and genetic analysis for several mutants. Chinese J. Biotechnol. 2001, 17:288-292. (in Chinese with an English abstract).