The in Silico map-based cloning of Pi36, a rice coiled-coil-nucleotide- binding site-leucine-rich repeat gene that confers race-specific resistance to the blast fungus

Genetics

Volumn 176, Issue 4, 2007, Pages 2541-2549

  Liu, Xinqiong ^a,b   Lin, Fei ^a   Wang, Ling ^a   Pan, Qinghua ^a  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^b SOUTH CENTRAL UNIVERSITY FOR NATIONALITIES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

LEUCINE;

AMPLICON; ARTICLE; BARLEY; CHROMOSOME 8; DNA POLYMORPHISM; GENE AMPLIFICATION; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC RESISTANCE; GENETIC SUSCEPTIBILITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE BINDING SITE; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PSEUDOGENE; REAL TIME POLYMERASE CHAIN REACTION; RICE BLAST;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; CLONING, MOLECULAR; DNA PRIMERS; DNA, PLANT; EVOLUTION, MOLECULAR; GENE EXPRESSION PROFILING; GENES, PLANT; GENETIC COMPLEMENTATION TEST; MAGNAPORTHE; MOLECULAR SEQUENCE DATA; MUTATION; ORYZA SATIVA; PHENOTYPE; PHYLOGENY; PLANT DISEASES; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED;

ERYSIPHALES; FUNGI; HORDEUM; JAPONICA;

EID: 34548432178     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.075465     Document Type: Article

References (58)

1. ALTSCHUL, S. F., T. L. MADDEN, A. A. SCHAFFER, J. ZHANG, Z. ZHANG et al., 1997 Gapped BLASTand PSLBLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. ANDERSON, P. A., G. J. LAWRENCE, B. C. MORRISH, M. A. AYLIFFE, E. J. FINNEGAN et al., 1997 Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding region. Plant Cell 9: 641-651.
3. BAI, J., L. A. PENNILL, J. NING, S. W. LEE, J. RAMALINGAM et al., 2002 Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res. 12: 1871-1884.
4. BENT, A. F., 1996 Plant disease resistance genes, function meets structure. Plant Cell 8: 1757-1771.
5. BENT, A. F., B. N. KUNKEL, D. DAHLBECK, K. L. BROWN, R. SCHMIDT et al., 1994 RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science 265: 1856-1860.
6. BRYAN, G. T., K. S. WU, L. FARRALL, Y. L. JIA, H. P. HERSHEY et al., 2000 A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12: 2033-2045.
7. CAICEDO, A. L., B. A. SCHAAL and B. N. KUNKEL, 1999 Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96: 302-306.
8. CHEN, S., L. WANG, Z. Q. QUE, R. Q. PAN and Q. H. PAN, 2005 Genetic and physicalmapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1. Theor. Appl. Genet. 111: 1563-1570.
9. CHEN, X. W., J. J. SHANG, D. X. CHEN, C. L. LEI, Y. ZOU et al., 2006 A B-lectin receptor kinase gene conferring rice blast resistance. Plant J. 46: 794-804.
10. DANGL, J. L., and J. D. G. JONES, 2001 Plant pathogens and integrated defence responses to infection. Nature 411: 826-833.
11. DO, C. B., M. S. MAHABHASHYAM, M. BRUDNO and S. BATZOGLOU, 2005 ProbCons: probabilistic consistency-based multiple sequence alignment. Genome Res. 15: 330-340.
12. DODDS, P. N., G. J. LAWRENCE, A. M. CATANZARITI, T. TEH, C. I. WANG et al., 2006 Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc. Natl. Acad. Sci. USA 103: 8888-8893.
13. ELLIS, J. G., P. DODDS and T. PRYOR, 2000 The generation of plant disease resistance gene specificities. Trends Plant Sci. 5: 373-379.
14. FEUILLET, C., S. TRAVELLA, N. STEIN, L. ALBAR, A. NUBLAT et al., 2003 Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc. Natl. Acad. Sci. USA 100: 15253-15258.
15. GRANT, M. R., L. GODIARD, E. STRAUBE, T. ASHFIELD, J. LEWALD et al., 1995 Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science 269: 843-846.
16. GU, K., B. YANG, D. TIAN, L. WU, D. WANG et al., 2005 R gene expression induced by a type-III effector triggers disease resistance in rice. Nature 435: 1122-1125.
17. HAMMOND-KOSACK, K. E., and J. D. G. JONES, 1997 Plant disease resistance genes. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48: 575-607.
18. HANZAWA, Y., T. MONEY and D. BRADLEY, 2005 A single amino acid converts a repressor to an activator of flowering. Proc. Natl. Acad. Sci. USA 102: 7748-7753.
19. HIEI, Y., S. OHTA, T. KOMARI and T. KUMASHIRO, 1994 Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J. 6: 271-282.
20. HORVATH, H., N. ROSTOKS, R. BRUEGGEMAN, B. STEFFENSONM, D. VON WETTSTEIN et al., 2003 Genetically engineered stem rust resistance in barley using the Rpg1 gene. Proc. Natl. Acad. Sci. USA 100: 364-369.
21. HULBERT, S. H., C. A. WEBB, S. M. SMITH and Q. SUN, 2001 Resistance gene complexes, Evolution and utilization. Annu. Rev. Phytopathol. 39: 285-312.
22. HWANG, C., and V. M. WILLIAMSON, 2003 Leucine-rich repeat-mediated intramolecular interactions in nematode recognition and cell death signaling by the tomato resistance protein Mi. Plant J. 34: 585-593.
23. JIA, Y. L., S. A. MCADAMS, G. T. BRYAN, H. P. HERSHEY and B. VALENT, 2000 Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO J. 19: 4004-4014.
24. KIYOSAWA, S., 1981 Gene analysis for blast resistance. Oryza 18: 196-203.
25. LIU, X. Q., L. WANG, S. CHEN, F. LIN and Q. H. PAN, 2005 Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8. Mol. Genet. Genomics 274: 394-401.
26. LIU, Y. G., H. LIU, L. CHEN, W. QIU, Q. ZHANG et al., 2002 Development of new transformation- competent artificial chromosome vectors and rice genomic libraries for efficient gene cloning. Gene 282: 247-255.
27. LUPAS, A., M. VANDYKE and J. STOCK, 1991 Predicting coiled coils from protein sequences. Science 252: 1162-1164.
28. MACKILL, D. J., and J. M. BONMAN, 1992 Inheritance of blast resistance in near-isogenic lines of rice. Phytopathology 82: 746-749.
29. MCDOWELL, J. M., M. DHANDAYDHAM, T. A. LONG, M. G. AARTS, S. GOFF et al., 1998 Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 10: 1861-1874.
30. MEYERS, B. C., K. A. SHEN, P. ROHANI, B. S. GAUT and R. W. MICHELMORE, 1998 Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 11: 1833-1846.
31. MEYERS, B. C., A. W. DICKERMAN, R. W. MICHELMORE, R. M. PECHERER, S. SIVARAMAKRISHNAN et al., 1999 Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 20: 317-332.
32. MEYERS, B. C., A. KOZIK, A. GRIEGO, H. KUANG and R. W. MICHELMORE, 2003 Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15: 809-834.
33. MOFFETT, M., G. FARNHAM, J. PEART, and D. C. BAULCOMBE, 2002 Interaction between domains of a plant NBS-LRR protein in disease resistance related cell death. EMBO J. 21: 4511-4519.
34. MONOSI, B., R. J. WISSER, L. PENNILL and S. H. HULBERT, 2004 Full-genome analysis of resistance gene homologues in rice. Theor. Appl. Genet. 109: 1434-1447.
35. NEI, M., and S. KUMAR, 2000 Molecular Evolution and Phylogenetics. Oxford University Press, Oxford.
36. OU, S. H., 1979 Breeding rice for resistance to blast, a critical view, pp. 79-137 in Proceedings of the Rice Blast Workshop. International Rice Research Institute, Mantla, Philippines.
37. OU, S. H., 1985 Blast, pp. 109-201 in Rice Diseases, Ed. 2. Commonwealth Mycological Institute, Kew Surrey, UK.
38. PAN, Q., Y. S. LIU, O. BUDAI-HADRIAN, M. SELA, L. CARMEL-GOREN et al., 2000 Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons, tomato and Arabidopsis. Genetics 155: 309-322.
39. PAN, Q. H., Z. HU, T. TANISAKA and L. WANG, 2003 Fine mapping of the blast resistance gene Pi15, linked to Pii, on rice chromosome 9. Acta Bot. Sin. 45: 871-877.
40. PARNISKE, M., K. E. HAMMOND-KOSACK, C. GOLSTEIN, C. M. THOMAS, D. A. JONES et al., 1997 Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91: 821-832.
41. QU, S., G. COAKER, D. FRANCIS, B. ZHOU and G. L. WANG, 2003 Development of a new transformation-competent artificial chromosome (TAC) vector and construction of tomato and rice TAC libraries. Mol. Breed. 12: 297-308.
42. QU, S., G. LIU, B. ZHOU, M. BELLIZZI, L. ZENG et al., 2006 The broadspectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172: 1901-1914.
43. ROGERS, L. M., Y. K. KIM, W. GUO, L. GONZÁLEZ-CANDELAS, D. LI et al., 2000 Requirement for either a host- or pectin-induced pectate lyase for infection of Pisum sativum by Nectria hematococca. Proc. Natl. Acad. Sci. USA 97: 9813-9818.
44. SILUÉ, D., J. L. NOTTEGHEM and D. THARREAU, 1992 Evidence for a gene-for-gene relationship in the Oryza sativa-Magnaporthe grisea pathosystem. Phytopathology 82: 577-580.
45. SONG, J. Q., J. M. BRADEEN, S. K. NAESS, J. A. RAASCH, S. M. WIELGUS et al., 2003 Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight. Proc. Natl. Acad. Sci. USA 100: 9128-9133.
46. SONG, W. Y., G. L. WANG, L. L. CHEN, H. S. KIM, L. Y. PI et al., 1995 A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270: 1804-1806.
47. STAHL, E. A., and J. G. BISHOP, 2000 Plant-pathogen arms races at the molecular level. Curr. Opin. Plant Biol. 3: 299-304.
48. SUN, Q., N. C. COLLINS, M. AYLIFFE, S. M. SMITH, J. DRAKE et al., 2001 Recombination between paralogues at the rp1 rust resistance locus in maize. Genetics 158: 423-438.
49. SUN, X. L., Y. L. CAO, Z. F. YANG, C. G. XU, X. H. LI et al., 2004 Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J. 37: 517-527.
50. TRAUT, T. W., 1994 The functions and consensus motifs of nine types of peptide segments that form different types of nucleotide binding sites. Eur. J. Biochem. 229: 9-19.
51. VALENT, B., 1990 Rice blast as a model system for plant pathology. Phytopathology 80: 33-36.
52. VALENT, B., and F. G. CHUMLEY, 1994 Avirulence genes and mechanism of genetic instability in the rice blast fungus, pp. 111-134 in Rice Blast Disease, edited by R. S. ZEIGLER, S. A. LEONG and P. S. TENG. CABI, Wallingford, UK.
53. VAN DER VOSSEN, E. A., J. GROS, A. SIKKEMA, M. MUSKENS, D. WOUTERS et al., 2005 The Rpi-blb2 gene from Solanum bulbocastanum is an Mi-1 gene homolog conferring broad-spectrum late blight resistance in potato. Plant J. 44: 208-222.
54. VOS, P., G. SIMONS, T. JESSE, J. WIJBRANDI, L. HEINEN et al., 1998 The tomato Mi-1 gene confers resistance to both root-knot nematodes and potato aphids. Nat. Biotechnol. 16: 1365-1369.
55. WANG, Z. X., M. YANO, U. YAMANOUCHI, M. IWAMOTO, L. MONNA et al., 1999 The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 19: 55-64.
56. WULFF, B. B. H., C. M. THOMAS, M. SMOKER, M. GRANT and J. D. G. JONES, 2001 Domain swapping and gene shuffling identify sequences required for induction of an Avr-dependent hypersensitive response by the tomato Cf-4 and Cf-9 proteins. Plant Cell 13: 255-272.
57. YOSHIMURA, S., U. YAMANOUCHI, Y. KATAYOSE, S. TOKI, Z. X. WANG et al., 1998 Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc. Natl. Acad. Sci. USA 95: 1663-1668.
58. ZHOU, B., S. QU, G. LIU, M. DOLAN, H. SAKAI et al., 2006 The eight amino-acid differences within three leucine-rice repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea. Mol. Plant-Microbe Interact. 11: 1216-1228.