-
1
-
-
0035054170
-
Statistically optimal null filter based on instantaneous matched processing
-
DOI 10.1007/BF01204921
-
Agarwal, R., Plotkin, E.I., and Swamy, M.N.S. 2001. Statistical optimal null filter based on instantaneous matched processing. Circ. Syst. Signal Process. 20, 37-61. (Pubitemid 32370005)
-
(2001)
Circuits, Systems, and Signal Processing
, vol.20
, Issue.1
, pp. 37-61
-
-
Agarwal, R.1
Plotkin, E.I.2
Swamy, M.N.S.3
-
2
-
-
47049101156
-
Signal processing in sequence analysis: Advances in eukaryotic gene prediction
-
Akhtar, M., Epps, J., and Ambikairajah, E. 2008a. Signal processing in sequence analysis: advances in eukaryotic gene prediction. IEEE J. Sel. Top. Signal. 2, 310-321.
-
(2008)
IEEE J. Sel. Top. Signal.
, vol.2
, pp. 310-321
-
-
Akhtar, M.1
Epps, J.2
Ambikairajah, E.3
-
3
-
-
49049103757
-
Digital signal processing techniques for gene finding in eukaryotes
-
Akhtar, M., Ambikairajah, E., and Epps, J. 2008b. Digital signal processing techniques for gene finding in eukaryotes. Lect. Notes Comput. Sci. 5099, 144-152.
-
(2008)
Lect. Notes Comput. Sci.
, vol.5099
, pp. 144-152
-
-
Akhtar, M.1
Ambikairajah, E.2
Epps, J.3
-
7
-
-
0034491149
-
Frequency-domain analysis of biomolecular sequences
-
Anastassiou, D. 2000. Frequency-domain analysis of biomolecular sequences. Bioinformatics 16, 1073-1081. (Pubitemid 32112000)
-
(2000)
Bioinformatics
, vol.16
, Issue.12
, pp. 1073-1081
-
-
Anastassiou, D.1
-
8
-
-
34250648110
-
2D-dynamic representation of DNA sequences
-
DOI 10.1016/j.cplett.2007.05.050, PII S0009261407006379
-
Bielinska-Waz, D., Clark, T., Wa, P., et al. 2007. 2D-dynamic representation of DNA sequences. Chem. Phys. Lett. 442, 140-144. (Pubitemid 46935092)
-
(2007)
Chemical Physics Letters
, vol.442
, Issue.1-3
, pp. 140-144
-
-
Bielinska-Waz, D.1
Clark, T.2
Waz, P.3
Nowak, W.4
Nandy, A.5
-
9
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
DOI 10.1006/jmbi.1997.0951
-
Burge, C., and Karlin, S. 1997. Prediction of complete gene structure in human genomic DNA. J. Mol. Biol. 268, 78-94. (Pubitemid 27192680)
-
(1997)
Journal of Molecular Biology
, vol.268
, Issue.1
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
10
-
-
0001913645
-
Size-dependence of three-periodicity and long-range correlations in DNA sequences
-
Chechetkin, V.R., and Turygin, A.Y. 1995. Size-dependence of three-periodicity and long-range correlations in DNA sequences. Phys. Lett. A 199, 75-80.
-
(1995)
Phys. Lett. A
, vol.199
, pp. 75-80
-
-
Chechetkin, V.R.1
Turygin, A.Y.2
-
12
-
-
0036550319
-
Conversion of nucleotides sequences into genomic signals
-
Cristea, P.D. 2002. Conversion of nucleotides sequences into genomic signals. J. Cell. Mol. Med. 6, 279-303. (Pubitemid 44133978)
-
(2002)
Journal of Cellular and Molecular Medicine
, vol.6
, Issue.2
, pp. 279-303
-
-
Cristea, P.D.1
-
13
-
-
20844456271
-
Prediction of protein coding regions in DNA sequences using Fourier spectral characteristics
-
Proceedings - IEEE Sixth International Symposium on Multimedia Software Engineering, MSE 2004
-
Datta, S., Asif, A., and Wang, H. 2004. Prediction of protein coding regions in DNA sequences using Fourier spectral characteristics. Proc. IEEE 6th Int. Symp. Multimedia Software Eng. 160-163. (Pubitemid 40858937)
-
(2004)
Proceedings - IEEE Sixth International Symposium on Multimedia Software Engineering, MSE 2004
, pp. 160-163
-
-
Datta, S.1
Asif, A.2
Wang, H.3
-
14
-
-
0033178886
-
Intron-exon structures of eukaryotic model organisms
-
DOI 10.1093/nar/27.15.3219
-
Deutsch, M., and Long, M. 1999. Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res. 27, 3219-3228. (Pubitemid 29355739)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.15
, pp. 3219-3228
-
-
Deutsch, M.1
Long, M.2
-
15
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
DOI 10.1038/35103511
-
Eddy, S.R. 2001. Noncoding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929. (Pubitemid 33691089)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.12
, pp. 919-929
-
-
Eddy, S.R.1
-
17
-
-
0022791112
-
Tracking properties and steady-state performance of RLS adaptive filter algorithms
-
Eleftheriou, E., and Falconer, D.D. 1986. Tracking properties and steady-state performance of RLS adaptive filter algorithms. IEEE Trans. Acoust. Speech. 34, 1097-1110. (Pubitemid 17468666)
-
(1986)
IEEE Transactions on Acoustics, Speech, and Signal Processing
, vol.ASSP-34
, Issue.5
, pp. 1097-1110
-
-
Eleftheriou, E.1
Falconer, D.D.2
-
18
-
-
0020480512
-
Recognition of protein coding regions in DNA sequences
-
Fickett, J.W. 1982. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10, 5303-5318.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 5303-5318
-
-
Fickett, J.W.1
-
19
-
-
1542363555
-
A digital signal processing method for gene prediction with improved noise suppression
-
Fox, T., and Carreira, A. 2004. A digital signal processing method for gene prediction with improved noise suppression. EURASIP J. Appl. Signal. Process. 1, 108-114.
-
(2004)
EURASIP J. Appl. Signal. Process.
, vol.1
, pp. 108-114
-
-
Fox, T.1
Carreira, A.2
-
20
-
-
0346991453
-
The unseen genome: Beyond DNA
-
Gibbs, W.W. 2003. The unseen genome: beyond DNA. Sci. Am. 108-113.
-
(2003)
Sci. Am.
, pp. 108-113
-
-
Gibbs, W.W.1
-
22
-
-
39349097702
-
Boosting approach to exon detection in DNA sequences
-
DOI 10.1049/el:20082343
-
Gunawan, T., Epps, J., and Ambikairajah, E. 2008. Boosting approach to exon detection in DNA sequences. Electron Lett. 44, 323-324. (Pubitemid 351263194)
-
(2008)
Electronics Letters
, vol.44
, Issue.4
, pp. 323-324
-
-
Gunawan, T.S.1
Epps, J.2
Ambikairajah, E.3
-
23
-
-
63049104302
-
DSP technique for gene and exon prediction taking complex indicator sequence
-
Hota, M.K., and Srivastava, V.K. 2008. DSP technique for gene and exon prediction taking complex indicator sequence. Proc. IEEE TENCON 2008.
-
(2008)
Proc. IEEE TENCON 2008
-
-
Hota, M.K.1
Srivastava, V.K.2
-
24
-
-
57149120570
-
Coding region prediction based on a universal DNA sequence representation method
-
Jiang, X., Lavenier, D., and Yau, S. 2008. Coding region prediction based on a universal DNA sequence representation method. J. Comput. Biol. 15, 1237-1256.
-
(2008)
J. Comput. Biol.
, vol.15
, pp. 1237-1256
-
-
Jiang, X.1
Lavenier, D.2
Yau, S.3
-
25
-
-
51749095041
-
Prediction of protein-coding regions in DNA sequences using a model-based approach
-
Kahumani, R., Devabhaktuni, V., and Ahmad, M. 2008. Prediction of protein-coding regions in DNA sequences using a model-based approach. Proc. IEEE Int. Symp. Circuits Syst. 1918-1921.
-
(2008)
Proc. IEEE Int. Symp. Circuits Syst.
, pp. 1918-1921
-
-
Kahumani, R.1
Devabhaktuni, V.2
Ahmad, M.3
-
26
-
-
0042525755
-
Gene prediction by spectral rotation measure: A new method for identifying protein-coding regions
-
Kotlar, D., and Lavner, Y. 2003. Gene prediction by spectral rotation measure: a new method for identifying protein-coding regions. Genome Res. 13, 1930-1937. (Pubitemid 36987200)
-
(2003)
Genome Research
, vol.13
, Issue.8
, pp. 1930-1937
-
-
Kotlar, D.1
Lavner, Y.2
-
27
-
-
0030623944
-
Two methods for improving performance of an HMM and their applications for gene-finding
-
Krogh, A. 1997. Two methods for improving performance of an HMM and their applications for gene-finding. Proc. 5th Int. Conf. Intell. Syst. Mol. Biol. 179-186.
-
(1997)
Proc. 5th Int. Conf. Intell. Syst. Mol. Biol.
, pp. 179-186
-
-
Krogh, A.1
-
28
-
-
37649027056
-
Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome
-
Li, W., and Holste, D. 2005. Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome. Phys. Rev. E 71, 041910.
-
(2005)
Phys. Rev. e
, vol.71
, pp. 041910
-
-
Li, W.1
Holste, D.2
-
29
-
-
24044536613
-
Pattern recognition techniques for the emerging field of bioinformatics: A review
-
DOI 10.1016/j.patcog.2005.02.019, PII S0031320305001263
-
Liew, A., Yan, H., and Yang, M. 2005. Pattern recognition techniques for the emerging field of bioinformatics: a review. Pattern Recogn. 38, 2055-2073. (Pubitemid 41214645)
-
(2005)
Pattern Recognition
, vol.38
, Issue.11
, pp. 2055-2073
-
-
Liew, A.W.-C.1
Yan, H.2
Yang, M.3
-
31
-
-
0029586334
-
Intron phase correlations and the evolution of the intron/exon structure of genes
-
DOI 10.1073/pnas.92.26.12495
-
Long, M., Rosenberg, C., and Gilbert, W. 1995. Intron phase correlations and the evolution of the intron/exon structure of genes. Proc. Natl. Acad. Sci. USA 92, 12495-12499. (Pubitemid 26014096)
-
(1995)
Proceedings of the National Academy of Sciences of the United States of America
, vol.92
, Issue.26
, pp. 12495-12499
-
-
Long, M.1
Rosenberg, C.2
Gilbert, W.3
-
32
-
-
35348823762
-
An algorithm for gene prediction based on the Z curve
-
DOI 10.1109/ICBBE.2007.51, 4272535, 2007 1st International Conference on Bioinformatics and Biomedical Engineering, ICBBE
-
Ma, B., and Zhu, Y. 2007. An algorithm for gene prediction based on the Z curve. IEEE Int. Conf. Bioinform. Biomed. Eng. 1, 188-191. (Pubitemid 47592461)
-
(2007)
2007 1st International Conference on Bioinformatics and Biomedical Engineering, ICBBE
, pp. 188-191
-
-
Ma, B.1
Zhu, Y.-S.2
-
33
-
-
0036596123
-
Computer programs for eukaryotic gene prediction
-
Makarov, V. 2002. Computer programs for eukaryotic gene prediction. Brief Bioinform. 3, 195-199.
-
(2002)
Brief Bioinform.
, vol.3
, pp. 195-199
-
-
Makarov, V.1
-
34
-
-
77955919712
-
Theoretical justification of computing the 3-base periodicity using nucleotide distribution variance
-
doi:10.1016/j.biosystems.2010.07.001
-
Marhon, S., and Kremer, S.C. 2010. Theoretical justification of computing the 3-base periodicity using nucleotide distribution variance. BioSystems. doi:10.1016/j.biosystems.2010.07.001.
-
(2010)
BioSystems
-
-
Marhon, S.1
Kremer, S.C.2
-
35
-
-
43849083883
-
Identification of protein coding regions using the modified Gabor-Wavelet transform
-
Mena-Chalco, J., Carrer, H., Zana, Y., et al. 2008. Identification of protein coding regions using the modified Gabor-Wavelet transform. IEEE ACM Trans. Comput. Biol. 5, 198-207.
-
(2008)
IEEE ACM Trans. Comput. Biol.
, vol.5
, pp. 198-207
-
-
Mena-Chalco, J.1
Carrer, H.2
Zana, Y.3
-
36
-
-
0000347441
-
A new graphical representation and analysis of DNAc sequence structure: Methodology and application to globin genes
-
Nandy, A. 1994. A new graphical representation and analysis of DNAc sequence structure: methodology and application to globin genes. Curr. Sci. 66, 309-314.
-
(1994)
Curr. Sci.
, vol.66
, pp. 309-314
-
-
Nandy, A.1
-
37
-
-
79957517062
-
George Gamow and the genetic code
-
Nanjundiah, V. 2004. George Gamow and the genetic code. Resonance 9, 44-49.
-
(2004)
Resonance
, vol.9
, pp. 44-49
-
-
Nanjundiah, V.1
-
38
-
-
69149109819
-
A novel ACO-GA hybrid algorithm for feature selection in protein function prediction
-
Nemati, S., Basiri, M., Ghasem-Aghaee, N., et al. 2009. A novel ACO-GA hybrid algorithm for feature selection in protein function prediction. Expert Syst. Appl. 36, 12086-12094.
-
(2009)
Expert Syst. Appl.
, vol.36
, pp. 12086-12094
-
-
Nemati, S.1
Basiri, M.2
Ghasem-Aghaee, N.3
-
39
-
-
0035002807
-
Evaluation of gene-finding programs on mammalian sequences
-
DOI 10.1101/gr.147901
-
Rogic, S., Mackworth, A.K., and Ouellette, B.F. 2001. Evaluation of gene finding programs on mammalian sequences. Genome Res. 11, 817-832. (Pubitemid 32447866)
-
(2001)
Genome Research
, vol.11
, Issue.5
, pp. 817-832
-
-
Rogic, S.1
Mackworth, A.K.2
Ouellette, F.B.F.3
-
40
-
-
33847329566
-
In search of the small ones: Improved prediction of short exons in vertebrates, plants, fungi and protists
-
DOI 10.1093/bioinformatics/btl639
-
Saeys, Y., Rouze, P., and de Peer, Y.V. 2007. In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists. Bioinformatics 23, 414-420. (Pubitemid 46323121)
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 414-420
-
-
Saeys, Y.1
Rouze, P.2
Van De Peer, Y.3
-
42
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz, C. 2002. An expanding universe of noncoding RNAs. Science 296, 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, C.1
-
43
-
-
0031010292
-
Prediction of probable genes by Fourier analysis of genomic sequences
-
Tiwari, S., Ramachandran, S., Bhattacharya, A., et al. 1997. Prediction of probable genes by Fourier analysis of genomic sequences. Comput. Appl. Biosci. 13, 263-270. (Pubitemid 27249932)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.3
, pp. 263-270
-
-
Tiwari, S.1
Ramachandran, S.2
Bhattacharya, A.3
Bhattacharya, S.4
Ramaswamy, R.5
-
45
-
-
0025833642
-
Periodicity in DNA coding sequences: Implications in gene evolution
-
Tsonis, A., Elsner, J., and Tsonis, P. 1991. Periodicity in DNA coding sequences: implications in gene evolution. J. Theor. Biol. 151, 323-331.
-
(1991)
J. Theor. Biol.
, vol.151
, pp. 323-331
-
-
Tsonis, A.1
Elsner, J.2
Tsonis, P.3
-
47
-
-
0000204878
-
Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
-
Voss, R.F. 1992. Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68, 3805-3808.
-
(1992)
Phys. Rev. Lett.
, vol.68
, pp. 3805-3808
-
-
Voss, R.F.1
-
48
-
-
0031630823
-
On the optimal number of hidden nodes in a neural network
-
Wanas, N., Auda, G., Kamel, M.S., et al. 1998. On the optimal number of hidden nodes in a neural network. Proc. IEEE Can. Conf. Electrical Comput. Eng. 918-921.
-
(1998)
Proc. IEEE Can. Conf. Electrical Comput. Eng.
, pp. 918-921
-
-
Wanas, N.1
Auda, G.2
Kamel, M.S.3
-
49
-
-
0031760475
-
A new Fourier transform approach for protein coding measure based on the format of the Z curve
-
DOI 10.1093/bioinformatics/14.8.685
-
Yan, M., Lin, Z.S., and Zhang, C.T. 1998. A new Fourier transform approach for protein coding measure based on the format Z-curve. Bioinformatics 14, 685-690. (Pubitemid 28504993)
-
(1998)
Bioinformatics
, vol.14
, Issue.8
, pp. 685-690
-
-
Yan, M.1
Lin, Z.-S.2
Zhang, C.-T.3
-
50
-
-
0037901854
-
DNA sequence representation without degeneracy
-
DOI 10.1093/nar/gkg432
-
Yau, S.S.T., Wang, J., Niknejad, A., et al. 2003. DNA Sequence representation without degeneracy. Nucleic Acids Res. 31, 3078-3080. (Pubitemid 37441767)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.12
, pp. 3078-3080
-
-
Yau, S.S.-T.1
Wang, J.2
Niknejad, A.3
Lu, C.4
Jin, N.5
Ho, Y.-K.6
-
51
-
-
28744458836
-
A Fourier characteristic of coding sequences: Origins and a non-Fourier approximation
-
DOI 10.1089/cmb.2005.12.1153
-
Yin, C., and Yau, S. 2005. A Fourier characteristics of coding sequences: origins and a non-Fourier approximation. J. Comput. Biol. 12, 1153-1165. (Pubitemid 41759887)
-
(2005)
Journal of Computational Biology
, vol.12
, Issue.9
, pp. 1153-1165
-
-
Yin, C.1
Yau, S.S.-T.2
-
52
-
-
34447542501
-
Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
-
DOI 10.1016/j.jtbi.2007.03.038, PII S0022519307001543
-
Yin, C., and Yau, S. 2007. Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence. J. Theor. Biol. 247, 687-694. (Pubitemid 47081038)
-
(2007)
Journal of Theoretical Biology
, vol.247
, Issue.4
, pp. 687-694
-
-
Yin, C.1
Yau, S.S.-T.2
-
53
-
-
65449167165
-
DV-Curve: A novel intuitive tool for visualizing and analyzing DNA sequences
-
Zhang, Z. 2009. DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences. Bioinformatics 25, 1112-1117.
-
(2009)
Bioinformatics
, vol.25
, pp. 1112-1117
-
-
Zhang, Z.1
-
54
-
-
0027995001
-
Z curves, an intutive tool for visualizing and analyzing the DNA sequences
-
Zhang, R., and Zhang, C.T. 1994. Z curves, an intuitive tool for visualizing and analyzing the DNA sequences. J. Biomol. Struct. Dyn. 11, 767-782. (Pubitemid 24089977)
-
(1994)
Journal of Biomolecular Structure and Dynamics
, vol.11
, Issue.4
, pp. 767-782
-
-
Zhang, R.1
Zhang, C.-T.2
-
55
-
-
49749128373
-
Time-frequency analysis of click-evoked otoacoustic emissions by means of a minimum variance spectral estimation-based method
-
Zhang, Z.G., Zhang, V.W., Chan S.C., et al. 2008. Time-frequency analysis of click-evoked otoacoustic emissions by means of a minimum variance spectral estimation-based method. Hearing Res. 243, 18-27.
-
(2008)
Hearing Res.
, vol.243
, pp. 18-27
-
-
Zhang, Z.G.1
Zhang, V.W.2
Chan, S.C.3
|