메뉴 건너뛰기




Volumn 11, Issue 5, 2001, Pages 817-832

Evaluation of gene-finding programs on mammalian sequences

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE;

EID: 0035002807     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.147901     Document Type: Letter
Times cited : (204)

References (45)
  • 5
    • 0027722232 scopus 로고
    • The isochore organization of the human genome and its evolutionary history - A review
    • Bernardi, G. 1993. The isochore organization of the human genome and its evolutionary history - a review. Gene 135: 57-66.
    • (1993) Gene , vol.135 , pp. 57-66
    • Bernardi, G.1
  • 7
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structure in human genomic DNA
    • Burge, C. and Karlin, S. 1997. Prediction of complete gene structure in human genomic DNA. J. Mol. Biol. 268: 78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 8
    • 0032104509 scopus 로고    scopus 로고
    • Finding the genes in genomic DNA
    • Burge, C. and Karlin, S. 1998. Finding the genes in genomic DNA. Curr. Opin. Struc. Biol. 8: 346-354.
    • (1998) Curr. Opin. Struc. Biol. , vol.8 , pp. 346-354
    • Burge, C.1    Karlin, S.2
  • 9
    • 0030585734 scopus 로고    scopus 로고
    • Evaluation of gene structure prediction programs
    • Burset, M. and Guigo, R. 1996. Evaluation of gene structure prediction programs. Genomics 34: 353-367.
    • (1996) Genomics , vol.34 , pp. 353-367
    • Burset, M.1    Guigo, R.2
  • 10
    • 0030768930 scopus 로고    scopus 로고
    • Computational methods for the identification of genes in vertebrate genomic sequences
    • Claverie, J.-M. 1997. Computational methods for the identification of genes in vertebrate genomic sequences. Hum. Mol. Genet. 6: 1735-1744.
    • (1997) Hum. Mol. Genet. , vol.6 , pp. 1735-1744
    • Claverie, J.-M.1
  • 12
    • 0026039804 scopus 로고
    • Selection of splice sites in pre-mRNA with short internal exons
    • Dominski, Z. and Kole, R. 1991. Selection of splice sites in pre-mRNA with short internal exons. Mol. Cell Biol. 11: 6075-6083.
    • (1991) Mol. Cell Biol. , vol.11 , pp. 6075-6083
    • Dominski, Z.1    Kole, R.2
  • 13
    • 0027944162 scopus 로고
    • Gene structure prediction by linguistics methods
    • Dong, S. and Searls, D.B. 1994. Gene structure prediction by linguistics methods. Genomics 23: 540-551.
    • (1994) Genomics , vol.23 , pp. 540-551
    • Dong, S.1    Searls, D.B.2
  • 14
    • 79960655760 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 22
    • Dunham, I., Shimizu, N., Roe, B.A., Chissoe, S., et al. 1999. The DNA sequence of human chromosome 22. Nature 402: 489-495.
    • (1999) Nature , vol.402 , pp. 489-495
    • Dunham, I.1    Shimizu, N.2    Roe, B.A.3    Chissoe, S.4
  • 15
    • 0028963020 scopus 로고
    • Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
    • Duret, L., Mouchiroud, D., and Gautier, C. 1995. Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. J. Mol. Evol. 40: 308-317.
    • (1995) J. Mol. Evol. , vol.40 , pp. 308-317
    • Duret, L.1    Mouchiroud, D.2    Gautier, C.3
  • 16
    • 0028247213 scopus 로고
    • HOVERGEN, a database of homologous vertebrate genes
    • Duret, L., Mouchiroud, D., and Gouy, M. 1994. HOVERGEN, a database of homologous vertebrate genes. Nucleic Acids Res. 22: 2360-2365.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2360-2365
    • Duret, L.1    Mouchiroud, D.2    Gouy, M.3
  • 17
    • 0027059264 scopus 로고
    • Assessment of protein coding measures
    • Fickett, J.W. and Tung, C.-S. 1992. Assessment of protein coding measures. Nucleic Acids Res. 20: 6441-6450.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6441-6450
    • Fickett, J.W.1    Tung, C.-S.2
  • 18
    • 0000377189 scopus 로고    scopus 로고
    • The gene identification problem: An overview for developers
    • Fickett, J.W. 1996. The gene identification problem: An overview for developers. Comput. Chem. 20: 103-118.
    • (1996) Comput. Chem. , vol.20 , pp. 103-118
    • Fickett, J.W.1
  • 19
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea, L., Hartzell, G., Zhang, Z., Rubin, G.M., and Miller, W. 1998. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 8: 967-974.
    • (1998) Genome Res. , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3    Rubin, G.M.4    Miller, W.5
  • 21
    • 0027399170 scopus 로고
    • Ancient conserved regions in new gene sequences and the protein databases
    • Green, P., Lipman, D., Hillier, L., Waterston, R., States, D., and Claverie, J.M. 1993. Ancient conserved regions in new gene sequences and the protein databases. Science 259: 1711-1716.
    • (1993) Science , vol.259 , pp. 1711-1716
    • Green, P.1    Lipman, D.2    Hillier, L.3    Waterston, R.4    States, D.5    Claverie, J.M.6
  • 23
    • 0028850576 scopus 로고
    • Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA
    • Guigo, R. and Fickett, J.W. 1995. Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA. J. Mol. Biol. 253: 51-60.
    • (1995) J. Mol. Biol. , vol.253 , pp. 51-60
    • Guigo, R.1    Fickett, J.W.2
  • 24
    • 0023685544 scopus 로고
    • A survey on intron and exon lengths
    • Hawkins, J.D. 1988. A survey on intron and exon lengths. Nucleic Acids Res. 16: 9893-9908.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9893-9908
    • Hawkins, J.D.1
  • 25
    • 0031573382 scopus 로고    scopus 로고
    • A tool for analyzing and annotating genomic sequences
    • Huang, X., Adams, M.D., Zhou, H., and Kerlavage, A.R. 1997. A tool for analyzing and annotating genomic sequences. Genomics 46: 37-45.
    • (1997) Genomics , vol.46 , pp. 37-45
    • Huang, X.1    Adams, M.D.2    Zhou, H.3    Kerlavage, A.R.4
  • 27
    • 0030623944 scopus 로고    scopus 로고
    • Two methods for improving performance of an HMM and their application for gene-finding
    • (eds. T. Gaasterland et al. ), AAAI Press, Menlo Park, CA
    • Krogh, A. 1997. Two methods for improving performance of an HMM and their application for gene-finding. In Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology (eds. T. Gaasterland et al. ), pp. 179-186. AAAI Press, Menlo Park, CA.
    • (1997) Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology , pp. 179-186
    • Krogh, A.1
  • 29
    • 0028020523 scopus 로고
    • Evaluation of the exon predictions of the GRAIL software
    • Lopez, R., Larsen, F., and Prydz, H. 1994. Evaluation of the exon predictions of the GRAIL software. Genomics 24: 133-136.
    • (1994) Genomics , vol.24 , pp. 133-136
    • Lopez, R.1    Larsen, F.2    Prydz, H.3
  • 30
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark. Hmm: New solutions for gene-finding
    • Lukashin, A.V. and Borodovsky, M. 1998. GeneMark. hmm: New solutions for gene-finding. Nucleic Acids Res. 26: 1107-1115.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 31
    • 0342723790 scopus 로고    scopus 로고
    • Frequent alternative splicing of human genome
    • Mironov, A.A., Ficket, J.W., and Gelfand, M.S. 1999. Frequent alternative splicing of human genome. Genome Res. 9: 1288-1293.
    • (1999) Genome Res. , vol.9 , pp. 1288-1293
    • Mironov, A.A.1    Ficket, J.W.2    Gelfand, M.S.3
  • 33
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner, L. 1989. A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE 77: 257-285.
    • (1989) Proc. IEEE , vol.77 , pp. 257-285
    • Rabiner, L.1
  • 34
    • 0031855858 scopus 로고    scopus 로고
    • Accessing protein coding region integrity in cDNA sequencing projects
    • Salamov, A.A. Nishikawa, T., and Swindells, M.B. 1998. Accessing protein coding region integrity in cDNA sequencing projects. Bioinformatics 14: 384-390.
    • (1998) Bioinformatics , vol.14 , pp. 384-390
    • Salamov, A.A.1    Nishikawa, T.2    Swindells, M.B.3
  • 36
    • 0030010970 scopus 로고    scopus 로고
    • Entrez: Molecular biology database and retrieval system
    • Schuler, G.D., Epstein, J.A., Ohkawa, H., and Kans, J.A. 1996. Entrez: Molecular biology database and retrieval system. Methods Enzymol. 266: 141-162.
    • (1996) Methods Enzymol. , vol.266 , pp. 141-162
    • Schuler, G.D.1    Epstein, J.A.2    Ohkawa, H.3    Kans, J.A.4
  • 37
    • 0024618904 scopus 로고
    • Overlapping genes of Drosophila melanogaster: Organization of the z600-gonadal-Eip28/29 gene cluster
    • Schulz, R.A. and Butler, B.A. 1989. Overlapping genes of Drosophila melanogaster: Organization of the z600-gonadal-Eip28/29 gene cluster. Genes & Dev. 3: 232-242.
    • (1989) Genes & Dev. , vol.3 , pp. 232-242
    • Schulz, R.A.1    Butler, B.A.2
  • 38
    • 0028965444 scopus 로고
    • Identification of protein coding regions in genomic DNA
    • Snyder, E.E. and Stormo, G.D. 1995. Identification of protein coding regions in genomic DNA. J. Mol. Biol. 248: 1-18.
    • (1995) J. Mol. Biol. , vol.248 , pp. 1-18
    • Snyder, E.E.1    Stormo, G.D.2
  • 40
    • 0021704598 scopus 로고
    • A minimal intron length but no specific internal sequence is required for splicing the large rabbit B-globin intron
    • Wieringa, B., Hofer, E., and Weissmann, C. 1984. A minimal intron length but no specific internal sequence is required for splicing the large rabbit B-globin intron. Cell 37: 915-925.
    • (1984) Cell , vol.37 , pp. 915-925
    • Wieringa, B.1    Hofer, E.2    Weissmann, C.3
  • 43
    • 0034161476 scopus 로고    scopus 로고
    • Protein-length distributions for the three domains of life
    • Zhang, I. 2000. Protein-length distributions for the three domains of life. Trends Genet. 16: 107-109.
    • (2000) Trends Genet. , vol.16 , pp. 107-109
    • Zhang, I.1
  • 44
    • 0031027525 scopus 로고    scopus 로고
    • Identification of protein coding regions in the human genome by quadratic discriminant analysis
    • Zhang, M.Q. 1997. Identification of protein coding regions in the human genome by quadratic discriminant analysis. Proc. Natl. Acad. Sci. 94: 565-568.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 565-568
    • Zhang, M.Q.1
  • 45
    • 0030603239 scopus 로고    scopus 로고
    • The gene distribution of the human genome
    • Zoubak, S., Clay, O., and Bernardi, G. 1996. The gene distribution of the human genome. Gene 174: 95-102.
    • (1996) Gene , vol.174 , pp. 95-102
    • Zoubak, S.1    Clay, O.2    Bernardi, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.