-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0032857480
-
An exploration of the sequence of a 2.9 Mb region of the genome of Drosophila melanogaster. The Adh region
-
Ashburner, M., Mishra, S., Roote, J., Lewis, S.E., Blazej, R., Davis, T., Doyle, C., Galle, R., George, R., Harris, N., et al. 1999. An exploration of the sequence of a 2.9 Mb region of the genome of Drosophila melanogaster. The Adh region. Genetics 153: 179-219.
-
(1999)
Genetics
, vol.153
, pp. 179-219
-
-
Ashburner, M.1
Mishra, S.2
Roote, J.3
Lewis, S.E.4
Blazej, R.5
Davis, T.6
Doyle, C.7
Galle, R.8
George, R.9
Harris, N.10
-
4
-
-
0033976454
-
GenBank
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Rapp, B.A., and Wheeler, D.L. 2000. GenBank. Nucleic Acids Res. 28: 15-18.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 15-18
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
5
-
-
0027722232
-
The isochore organization of the human genome and its evolutionary history - A review
-
Bernardi, G. 1993. The isochore organization of the human genome and its evolutionary history - a review. Gene 135: 57-66.
-
(1993)
Gene
, vol.135
, pp. 57-66
-
-
Bernardi, G.1
-
7
-
-
0031586003
-
Prediction of complete gene structure in human genomic DNA
-
Burge, C. and Karlin, S. 1997. Prediction of complete gene structure in human genomic DNA. J. Mol. Biol. 268: 78-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
9
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
Burset, M. and Guigo, R. 1996. Evaluation of gene structure prediction programs. Genomics 34: 353-367.
-
(1996)
Genomics
, vol.34
, pp. 353-367
-
-
Burset, M.1
Guigo, R.2
-
10
-
-
0030768930
-
Computational methods for the identification of genes in vertebrate genomic sequences
-
Claverie, J.-M. 1997. Computational methods for the identification of genes in vertebrate genomic sequences. Hum. Mol. Genet. 6: 1735-1744.
-
(1997)
Hum. Mol. Genet.
, vol.6
, pp. 1735-1744
-
-
Claverie, J.-M.1
-
11
-
-
0032054294
-
Divergently transcribed overlapping genes expressed in liver and kidney and located in the 11p15.5 imprinted domain
-
Cooper, P.R., Smilinich, N.J., Day, C.D., Nowak, N.J., Reid, L.H., Pearsall, R.S., Reece, M., Prawitt, D., Landers, J., Housman, D.E., et al. 1998. Divergently transcribed overlapping genes expressed in liver and kidney and located in the 11p15.5 imprinted domain. Genomics 49: 38-51.
-
(1998)
Genomics
, vol.49
, pp. 38-51
-
-
Cooper, P.R.1
Smilinich, N.J.2
Day, C.D.3
Nowak, N.J.4
Reid, L.H.5
Pearsall, R.S.6
Reece, M.7
Prawitt, D.8
Landers, J.9
Housman, D.E.10
-
12
-
-
0026039804
-
Selection of splice sites in pre-mRNA with short internal exons
-
Dominski, Z. and Kole, R. 1991. Selection of splice sites in pre-mRNA with short internal exons. Mol. Cell Biol. 11: 6075-6083.
-
(1991)
Mol. Cell Biol.
, vol.11
, pp. 6075-6083
-
-
Dominski, Z.1
Kole, R.2
-
13
-
-
0027944162
-
Gene structure prediction by linguistics methods
-
Dong, S. and Searls, D.B. 1994. Gene structure prediction by linguistics methods. Genomics 23: 540-551.
-
(1994)
Genomics
, vol.23
, pp. 540-551
-
-
Dong, S.1
Searls, D.B.2
-
14
-
-
79960655760
-
The DNA sequence of human chromosome 22
-
Dunham, I., Shimizu, N., Roe, B.A., Chissoe, S., et al. 1999. The DNA sequence of human chromosome 22. Nature 402: 489-495.
-
(1999)
Nature
, vol.402
, pp. 489-495
-
-
Dunham, I.1
Shimizu, N.2
Roe, B.A.3
Chissoe, S.4
-
15
-
-
0028963020
-
Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
-
Duret, L., Mouchiroud, D., and Gautier, C. 1995. Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. J. Mol. Evol. 40: 308-317.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 308-317
-
-
Duret, L.1
Mouchiroud, D.2
Gautier, C.3
-
16
-
-
0028247213
-
HOVERGEN, a database of homologous vertebrate genes
-
Duret, L., Mouchiroud, D., and Gouy, M. 1994. HOVERGEN, a database of homologous vertebrate genes. Nucleic Acids Res. 22: 2360-2365.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2360-2365
-
-
Duret, L.1
Mouchiroud, D.2
Gouy, M.3
-
17
-
-
0027059264
-
Assessment of protein coding measures
-
Fickett, J.W. and Tung, C.-S. 1992. Assessment of protein coding measures. Nucleic Acids Res. 20: 6441-6450.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6441-6450
-
-
Fickett, J.W.1
Tung, C.-S.2
-
18
-
-
0000377189
-
The gene identification problem: An overview for developers
-
Fickett, J.W. 1996. The gene identification problem: An overview for developers. Comput. Chem. 20: 103-118.
-
(1996)
Comput. Chem.
, vol.20
, pp. 103-118
-
-
Fickett, J.W.1
-
19
-
-
0031732094
-
A computer program for aligning a cDNA sequence with a genomic DNA sequence
-
Florea, L., Hartzell, G., Zhang, Z., Rubin, G.M., and Miller, W. 1998. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 8: 967-974.
-
(1998)
Genome Res.
, vol.8
, pp. 967-974
-
-
Florea, L.1
Hartzell, G.2
Zhang, Z.3
Rubin, G.M.4
Miller, W.5
-
20
-
-
0029830044
-
Gene recognition via spliced sequence alignment
-
Gelfand, M.S., Mironov, A.A., and Pevzner, P.A. 1996. Gene recognition via spliced sequence alignment. Proc. Natl. Acad. Sci. 93: 9061-9066.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 9061-9066
-
-
Gelfand, M.S.1
Mironov, A.A.2
Pevzner, P.A.3
-
21
-
-
0027399170
-
Ancient conserved regions in new gene sequences and the protein databases
-
Green, P., Lipman, D., Hillier, L., Waterston, R., States, D., and Claverie, J.M. 1993. Ancient conserved regions in new gene sequences and the protein databases. Science 259: 1711-1716.
-
(1993)
Science
, vol.259
, pp. 1711-1716
-
-
Green, P.1
Lipman, D.2
Hillier, L.3
Waterston, R.4
States, D.5
Claverie, J.M.6
-
22
-
-
0026647310
-
Prediction of gene structure
-
Guigo, R., Knudsen, S., Drake, N., and Smith, T.F. 1992. Prediction of gene structure. J. Mol. Biol. 226: 141-157.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 141-157
-
-
Guigo, R.1
Knudsen, S.2
Drake, N.3
Smith, T.F.4
-
23
-
-
0028850576
-
Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA
-
Guigo, R. and Fickett, J.W. 1995. Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA. J. Mol. Biol. 253: 51-60.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 51-60
-
-
Guigo, R.1
Fickett, J.W.2
-
24
-
-
0023685544
-
A survey on intron and exon lengths
-
Hawkins, J.D. 1988. A survey on intron and exon lengths. Nucleic Acids Res. 16: 9893-9908.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 9893-9908
-
-
Hawkins, J.D.1
-
25
-
-
0031573382
-
A tool for analyzing and annotating genomic sequences
-
Huang, X., Adams, M.D., Zhou, H., and Kerlavage, A.R. 1997. A tool for analyzing and annotating genomic sequences. Genomics 46: 37-45.
-
(1997)
Genomics
, vol.46
, pp. 37-45
-
-
Huang, X.1
Adams, M.D.2
Zhou, H.3
Kerlavage, A.R.4
-
27
-
-
0030623944
-
Two methods for improving performance of an HMM and their application for gene-finding
-
(eds. T. Gaasterland et al. ), AAAI Press, Menlo Park, CA
-
Krogh, A. 1997. Two methods for improving performance of an HMM and their application for gene-finding. In Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology (eds. T. Gaasterland et al. ), pp. 179-186. AAAI Press, Menlo Park, CA.
-
(1997)
Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology
, pp. 179-186
-
-
Krogh, A.1
-
28
-
-
0030333286
-
A generalized hidden Markov model for the recognition of human genes in DNA
-
(eds. D. States et al.), AAAI Press, Menlo Park, CA
-
Kulp, D., Haussler, D., Reese, M.G., and Eeckman, F.H. 1996. A generalized hidden Markov model for the recognition of human genes in DNA. In Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology (eds. D. States et al.), pp. 134-142. AAAI Press, Menlo Park, CA.
-
(1996)
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology
, pp. 134-142
-
-
Kulp, D.1
Haussler, D.2
Reese, M.G.3
Eeckman, F.H.4
-
29
-
-
0028020523
-
Evaluation of the exon predictions of the GRAIL software
-
Lopez, R., Larsen, F., and Prydz, H. 1994. Evaluation of the exon predictions of the GRAIL software. Genomics 24: 133-136.
-
(1994)
Genomics
, vol.24
, pp. 133-136
-
-
Lopez, R.1
Larsen, F.2
Prydz, H.3
-
30
-
-
0032519353
-
GeneMark. Hmm: New solutions for gene-finding
-
Lukashin, A.V. and Borodovsky, M. 1998. GeneMark. hmm: New solutions for gene-finding. Nucleic Acids Res. 26: 1107-1115.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
31
-
-
0342723790
-
Frequent alternative splicing of human genome
-
Mironov, A.A., Ficket, J.W., and Gelfand, M.S. 1999. Frequent alternative splicing of human genome. Genome Res. 9: 1288-1293.
-
(1999)
Genome Res.
, vol.9
, pp. 1288-1293
-
-
Mironov, A.A.1
Ficket, J.W.2
Gelfand, M.S.3
-
32
-
-
0026572003
-
The complete DNA sequence of yeast chromosome III
-
Oliver, S.G., van der Aart, Q. J., Agostoni-Carbone, M.L., Aigle, M., Alberghina, L., Alexandraki D., Antoine, G., Anwar R., Ballesta, J.P., Benit, P., et al. 1992. The complete DNA sequence of yeast chromosome III. Nature 357: 38-46.
-
(1992)
Nature
, vol.357
, pp. 38-46
-
-
Oliver, S.G.1
Van Der Aart, Q.J.2
Agostoni-Carbone, M.L.3
Aigle, M.4
Alberghina, L.5
Alexandraki, D.6
Antoine, G.7
Anwar, R.8
Ballesta, J.P.9
Benit, P.10
-
33
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner, L. 1989. A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE 77: 257-285.
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-285
-
-
Rabiner, L.1
-
34
-
-
0031855858
-
Accessing protein coding region integrity in cDNA sequencing projects
-
Salamov, A.A. Nishikawa, T., and Swindells, M.B. 1998. Accessing protein coding region integrity in cDNA sequencing projects. Bioinformatics 14: 384-390.
-
(1998)
Bioinformatics
, vol.14
, pp. 384-390
-
-
Salamov, A.A.1
Nishikawa, T.2
Swindells, M.B.3
-
35
-
-
0032449018
-
A decision tree system for finding genes in DNA
-
Salzberg, S., Delcher, A., Fasman, K., and Henderson, J. 1998. A decision tree system for finding genes in DNA. J. Comp. Biol. 5: 667-680.
-
(1998)
J. Comp. Biol.
, vol.5
, pp. 667-680
-
-
Salzberg, S.1
Delcher, A.2
Fasman, K.3
Henderson, J.4
-
36
-
-
0030010970
-
Entrez: Molecular biology database and retrieval system
-
Schuler, G.D., Epstein, J.A., Ohkawa, H., and Kans, J.A. 1996. Entrez: Molecular biology database and retrieval system. Methods Enzymol. 266: 141-162.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 141-162
-
-
Schuler, G.D.1
Epstein, J.A.2
Ohkawa, H.3
Kans, J.A.4
-
37
-
-
0024618904
-
Overlapping genes of Drosophila melanogaster: Organization of the z600-gonadal-Eip28/29 gene cluster
-
Schulz, R.A. and Butler, B.A. 1989. Overlapping genes of Drosophila melanogaster: Organization of the z600-gonadal-Eip28/29 gene cluster. Genes & Dev. 3: 232-242.
-
(1989)
Genes & Dev.
, vol.3
, pp. 232-242
-
-
Schulz, R.A.1
Butler, B.A.2
-
38
-
-
0028965444
-
Identification of protein coding regions in genomic DNA
-
Snyder, E.E. and Stormo, G.D. 1995. Identification of protein coding regions in genomic DNA. J. Mol. Biol. 248: 1-18.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 1-18
-
-
Snyder, E.E.1
Stormo, G.D.2
-
39
-
-
0029173791
-
Identification of human gene structure using linear discriminant functions and dynamic programming
-
(eds. C. Rawling et al.), AAAI Press, Menlo Park, CA
-
Solovyev, V.V., Salamov, A.A., Lawrence, C.B. 1995. Identification of human gene structure using linear discriminant functions and dynamic programming. In Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology (eds. C. Rawling et al.), pp. 367-375. AAAI Press, Menlo Park, CA.
-
(1995)
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology
, pp. 367-375
-
-
Solovyev, V.V.1
Salamov, A.A.2
Lawrence, C.B.3
-
40
-
-
0021704598
-
A minimal intron length but no specific internal sequence is required for splicing the large rabbit B-globin intron
-
Wieringa, B., Hofer, E., and Weissmann, C. 1984. A minimal intron length but no specific internal sequence is required for splicing the large rabbit B-globin intron. Cell 37: 915-925.
-
(1984)
Cell
, vol.37
, pp. 915-925
-
-
Wieringa, B.1
Hofer, E.2
Weissmann, C.3
-
41
-
-
0028295681
-
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans
-
Wilson, R., Ainscough, R., Anderson, K., Baynes, C., Berks, M., Bonfield, J., Burton, J., Connell, M., Copsey, T., Cooper, J., et al. 1994. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature 368: 32-38.
-
(1994)
Nature
, vol.368
, pp. 32-38
-
-
Wilson, R.1
Ainscough, R.2
Anderson, K.3
Baynes, C.4
Berks, M.5
Bonfield, J.6
Burton, J.7
Connell, M.8
Copsey, T.9
Cooper, J.10
-
42
-
-
0028685492
-
An improved system for exon recognition and gene modeling in human DNA sequences
-
(eds. R. Altman et al.), AAAI Press, Menlo Park, CA
-
Xu, Y., Einstein, J.R., Mural, R.J., Shah, M., and Uberbacher, E.C. 1994. An improved system for exon recognition and gene modeling in human DNA sequences. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology (eds. R. Altman et al.), pp. 376-384. AAAI Press, Menlo Park, CA.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 376-384
-
-
Xu, Y.1
Einstein, J.R.2
Mural, R.J.3
Shah, M.4
Uberbacher, E.C.5
-
43
-
-
0034161476
-
Protein-length distributions for the three domains of life
-
Zhang, I. 2000. Protein-length distributions for the three domains of life. Trends Genet. 16: 107-109.
-
(2000)
Trends Genet.
, vol.16
, pp. 107-109
-
-
Zhang, I.1
-
44
-
-
0031027525
-
Identification of protein coding regions in the human genome by quadratic discriminant analysis
-
Zhang, M.Q. 1997. Identification of protein coding regions in the human genome by quadratic discriminant analysis. Proc. Natl. Acad. Sci. 94: 565-568.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 565-568
-
-
Zhang, M.Q.1
-
45
-
-
0030603239
-
The gene distribution of the human genome
-
Zoubak, S., Clay, O., and Bernardi, G. 1996. The gene distribution of the human genome. Gene 174: 95-102.
-
(1996)
Gene
, vol.174
, pp. 95-102
-
-
Zoubak, S.1
Clay, O.2
Bernardi, G.3
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