Detection of regional trends in salmonid habitat in coastal streams, Oregon

Transactions of the American Fisheries Society

Volumn 140, Issue 1, 2011, Pages 52-66

  Anlauf, Kara J ^a   Gaeuman, William ^b,c   Jones, Kim K ^a  

^a OREGON DEPARTMENT OF FISH AND WILDLIFE   (United States)

^b OREGON STATE UNIVERSITY   (United States)

^c ALASKA DEPARTMENT OF FISH AND GAME   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMONITORING; COASTAL ZONE; CONSERVATION MANAGEMENT; DATA SET; DETECTION METHOD; DRAINAGE; ERROR ANALYSIS; ESTIMATION METHOD; FRESHWATER ENVIRONMENT; GEOGRAPHICAL REGION; HABITAT TYPE; LINEARITY; MAGNITUDE; NUMERICAL MODEL; POPULATION STRUCTURE; SALMONID; SENSITIVITY ANALYSIS; SPATIOTEMPORAL ANALYSIS; STREAM; TEMPORAL VARIATION; TIME SERIES; VOLUME; WATERSHED; WOOD;

OREGON; PACIFIC OCEAN; PACIFIC OCEAN (NORTHWEST); UNITED STATES;

SALMONIDAE;

EID: 79956371061     PISSN: 00028487     EISSN: 15488659     Source Type: Journal    
DOI: 10.1080/00028487.2010.550496     Document Type: Article

References (76)

1. Allan, J. D. 2004. Landscape and riverscapes: the influence of land use on stream ecosystems. Annual Review of Ecological and Evolutionary Systems 35: 257-284.
2. Anlauf, K. J., K. K. Jones, and C. H. Stein. 2009. The status and trend of physical habitat and rearing potential in coho bearing streams in the Oregon coastal coho evolutionary significant unit. Oregon Department of Fish and Wildlife, OPSW-ODFW-2009-5, Salem. Available: oregonstate. edu/dept/ODFW/freshwater/inventory/pdffiles/OPHabitatCoastalESU 2009. pdf. (April 2010).
3. Bernhardt, E. S., M. A. Palmer, J. D. Allan, G. Alexander, K. Barnas, S. Brooks, J. Carr, S. Clayton, C. Dahm, J. Follstad-Shah, D. Galat, S. Gloss, P. Goodwin, D. Hart, B. Hassett, R. Jenkinson, S. Katz, G. M. Kondolf, P. S. Lake, R. Lave, J. L. Meyer, T. K. O'Donnell, L. Pagano, B. Powell, and E. Sudduth. 2005. Synthesizing U.S. river restoration efforts. Science (Washington, D.C.) 308: 636-637.
4. Beschta, R. L. 1978. Long-term patterns of sediment production following road construction and logging in the Oregon Coast Range. Water Resources Research 14: 1011-1016.
5. Beschta, R. L. 1979. Debris removal and its effect on sedimentation in an Oregon Coast Range stream. Northwest Science 53(1): 71-77.
6. Bisson, P. A., R. E. Bilby, M. D. Bryant, C. A. Dolloff, G. B. Grette, R. A. House, M. L. Murphy, K. V. Koski, J. R. Sedell. 1987. Large woody debris in forested streams in the Pacific Northwest: past, present, and future. University of Washington, Institute of Forest Resources Contribution 57: 140-190.
7. Bisson, P. A., J. B. Dunham, and G. H. Reeves. 2009. Freshwater ecosystems and resilience of Pacific salmon: habitat management based on natural variability. Ecology and Society 14: 45.
8. Bjornn, T. C., and D. W. Reiser. 1991. Habitat requirements of salmonids in streams. Pages 83-138 in W. R. Meehan, editor. Influences of forest and rangeland management on salmonid fishes and their habitats. American Fisheries Society, Special Publication 19, Bethesda, Maryland.
9. Bryant, M. D., J. P. Caouette, and B. E. Wright. 2004. Evaluating stream habitat survey data and statistical power using an example from Southeast Alaska. North American Journal of Fisheries Management 24: 1353-1362.
10. Buhle, E. R., K. K. Holsman, M. D. Scheuerell, and A. Albaugh. 2009. Using an unplanned experiment to evaluate the effects of hatcheries and environmental variation on threatened populations of wild salmon. Biological Conservation 142: 2449-2455.
11. Burnett, K. M., G. H. Reeves, D. J. Miller, S. Clarke, K. Vance-Borland, and K. Christiansen. 2007. Distribution of salmon-habitat potential relative to landscape characteristics and implications for conservation. Ecological Applications 17: 66-80.
12. Burnham, K. P., and D. R. Anderson. 2002. Model selection and multimodel inference: a practical information-theoretic approach. Springer-Verlag, New York.
13. Cederholm, C. J., R. E. Bilby, P. A. Bisson, T. W. Bumstead, B. R. Fransen, W. J. Scarlett, and J. W. Ward. 1997. Response of juvenile coho salmon and steelhead to placement of large woody debris in a coastal Washington stream. North American Journal of Fisheries Management 17: 947-963.
14. Chilcote, M. W. 1998. Conservation status of steelhead in Oregon. Oregon Department of Fish and Wildlife, Fish Division, Information Report 98-3, Salem.
15. Chilcote, M. W., T. Nickelson, and K. Moore. 2005. Oregon coastal coho assessment. Part 2: viability criteria and status assessment of Oregon coastal coho. Oregon Department of Fish and Wildlife, Salem.
16. Coronado, C., and R. Hilborn. 1998. Spatial and temporal factors affecting survival in coho salmon (Oncorhynchus kisutch) in the Pacific Northwest. Canadian Journal of Fisheries and Aquatic Sciences 55: 2067-2077.
17. Croke, J. C., and P. B. Hairsine. 2006. Sediment delivery in managed forests: a review. Environmental Review 14: 59-87.
18. Czarnomski, N. M., D. M. Dreher, K. U. Snyder, J. A. Jones, and F. J. Swanson. 2008. Dynamics of wood in stream networks of the western Cascades Range, Oregon. Canadian Journal of Forest Research 38: 2236-2248.
19. Dugaw, D. D., J. D. Heitke, E. K. Archer, R. C. Henderson, and J. L. Kershner. 2005. Effectiveness monitoring for streams and riparian areas: sampling protocol for stream channel features. PACFISH/INFISH Biological Opinion (PIBO) 812 Effectiveness Monitoring Program, Logan, Utah. Available: www.fs.fed.us/biology/fishecology/emp.(April 2010).
20. Firman, J. C. and S. E. Jacobs. 2001. A survey design for integrated monitoring of salmonids. Pages 242-252 in E. E. Knudsen, C. R. Steward, D. D. MacDonald, J. E. Williams, and D. W. Reiser, editors. Proceedings of the first international symposium on geographic information systems (GIS) in fishery science. Fishery GIS Research Group, Saitama, Japan.
21. Gray, B. R., and M. M. Burlew. 2007. Estimating trend precision and power to detect trends across grouped count data. Ecology 88: 2364-2372.
22. Hariston-Strang, A. B., P. W. Adams, and G. G. Ice. 2008. The Oregon forest practices act and forest research. Pages 95-113 in D. Stednick, editor. Hydrological and biological responses to forest practices. Springer-Verlag, New York.
23. Hall, J. D., G. W. Brown, and R. L. Lantz. 1987. The Alsea watershed study: a retrospective. Pages 399-416 in E. O. Salo and T. W. Cundy, editors. Streamside management: forestry and fishery interactions. University of Washington, Institute of Forest Resources, Seattle.
24. Hall, J. D., and R. L. Lantz. 1969. Effects of logging on the habitat of coho salmon and cutthroat trout in coastal streams. Pages 355-375 in T. G. Northcote, editor. Symposium on salmon and trout in streams. University of British Columbia Press, H. R. MacMillan Lectures in Fisheries, Vancouver.
25. Hatch, S. A. 2003. Statistical power for detecting trends within applications to seabird monitoring. Biological Conservation 111: 317-329.
26. Johnson, S. L., J. D. Rodgers, M. F. Solazzi, and T. E. Nickelson. 2005. Effects of an increase in large wood abundance and survival of juvenile salmonids (Oncorhynchus spp.) in an Oregon coastal stream. Canadian Journal of Fisheries and Aquatic Sciences 62: 412-424.
27. Jones, K. K., R. L. Flitcroft, and B. A. Thom. 2001. Spatial patterns of aquatic habitat in Oregon. Pages 266-280 in T. Nishida, P. J. Kailola, and C. E. Hollingworth, editors. Proceedings of the first international symposium on geographic information systems (GIS) in fishery science. Fishery GIS Research Group, Saitama, Japan.
28. Jorgensen, J. C., J. M. Honea, M. M. McClure, T. D. Cooney, K. Engie, and D. M. Holzer. 2009. Linking landscape-level change to habitat quality: an evaluation of restoration actions on the freshwater habitat of spring-run Chinook salmon. Freshwater Biology 54: 1560-1575.
29. Kaufmann, P. R., and R. M. Hughes. 2006. Geomorphic and anthropogenic influences on fish and amphibians in Pacific Northwest coastal streams. Pages 429-455 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
30. Kaufmann, P. R., P. Levine, E. G. Robison, C. Seeliger, and D. V. Peck. 1999. Quantifying physical habitat in wadeable streams. U.S. Environmental Protection Agency, EPA/620/R-99/003, Washington, D.C.
31. Kenward, M. G., and J. H. Roger. 1997. Small sample inference for fixed effects from restricted maximum likelihood. Biometrics 53: 983-997.
32. Klein, L. R., S. R. Clayton, J. R. Alldredge, and P. Goodwin. 2007. Long-term monitoring and evaluation of the lower Red River meadow restoration project, Idaho, U.S.A. Restoration Ecology 15: 223-239.
33. Knudsen, E. E. 2000. Managing Pacific salmon escapements: the gaps between theory and reality. Pages 237-272 in E. E. Knudsen, C. R. Steward, D. D. MacDonald, J. E. Williams, and D. W. Reiser, editors. Sustainable fisheries management: pacific salmon. CRC Press, Boca Raton, Florida.
34. Koslow, J. A., A. J. Hobday, G. W. Boehlert. 2002. Climate variability and marine survival of coho salmon (Oncorhynchus kisutch) in the Oregon production area. Fisheries Oceanography 11: 65-77.
35. Kostow, K. 1995. Biennial report on the status of wild fish in Oregon. Oregon Department of Fish and Wildlife, Portland.
36. Larsen, D. P., P. R. Kaufmann, T. M. Kincaid, and N. S. Urquhart. 2004. Detecting persistent change in the habitat of salmon-bearing streams in the Pacific Northwest. Canadian Journal Fisheries and Aquatic Science 61: 283-291.
37. Larsen, D. P., T. M. Kincaid, S. E. Jacobs, and N. S. Urquhart. 2001. Designs for evaluating local and regional scale trends. BioScience 51: 1069-1078.
38. Lawson, P. W. 1993. Cycles in ocean productivity, trends in habitat quality, and the restoration of salmon runs in Oregon. Fisheries 18(8): 6-10.
39. Lesica, P., and B. M. Steele. 1996. A method for monitoring long-term population trends: an example using rare arctic-alpine plants. Ecological Applications 6: 879-887.
40. Lichatowich, J. 1989. Habitat alteration and changes in abundance of coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytscha) in Oregon's coastal streams. Canadian Special Publication of Fisheries and Aquatic Sciences 105: 92-99.
41. Littell, R. C., G. A. Milliken, W. W. Stroup, R. D. Wolfinger, and O. Schabenberger. 2006. SAS for mixed models, 2nd edition. SAS Institute Cary, North Carolina.
42. Lovett, G. M., D. A. Burns, C. T. Driscoll, J. C. Jenkins, M. J. Mitchell, L. Rustad, J. B. Shanley, G. E. Likens, and R. Haeuber. 2007. Who needs environmental monitoring? Frontiers in Ecology and the Environment 5: 253 260.
43. McIntosh, B. A., J. R. Sedell, R. T. Thurow, S. E. Clarke, and G. L. Chandler. 2000. Historical changes in pool habitats in the Columbia River basin. Ecological Applications 10: 1478-1496.
44. Miller, R. R. 2010. Is the past present? Historical splash dam mapping and stream disturbance detection in the Oregon coast range. Master's thesis. Oregon State University, Corvallis.
45. Milner, N. J., J. M. Elliott, J. D. Armstrong, R. Gardiner, J. S. Welton, and M. Ladle. 2003. The natural control of salmon and trout populations in streams. Fisheries Research 62: 111-125.
46. Montgomery, D. R. 2003. Wood in rivers: interactions with channel morphology and processes. Geomophology 51: 1-5.
47. Moore, K. M. S. 2009. Oregon coast coho salmon ESU current status and trends: Oregon Department of Fish and Wildlife comments to NOAA Fisheries status review 2009 on Oregon coast coho ESU. Oregon Department of Fish and Wildlife, Corvallis.
48. Moore, K. M. S., K. K. Jones, and J. M. Dambacher. 2007. Methods for stream habitat surveys: aquatic inventories project. Oregon Department of Fish and Wildlife, Information Report 2007-01, Salem. Available: oregonstate. edu/dept/ODFW/freshwater/inventory/pdffiles/HabMethodsInfoReport2007-01. pdf.(April 2010).
49. Nehlsen, W., J. E. Williams, and J. A. Lichatowich. 1991. Pacific Salmon at the crossroads: stocks at risk from California, Oregon, Idaho, and Washington. Fisheries 16(2): 4-21.
50. Nickelson, T. E., and P. W. Lawson. 1998. Population viability of coho salmon, Oncorhynchus kisutch, in Oregon coastal basins: application of a habitatbased life cycle model. Canadian Journal of Fisheries and Aquatic Sciences 55: 2283-2392.
51. Nikerson, D. M., and A. Brunell. 1997. Power analysis for detecting trends in the presence of concomitant variables. Ecology 79: 1442-1447.
52. Nikerson, T. E., J. D. Rodgers, S. L. Johnson, M. F. Solazzi. 1992. Seasonal changes in habitat use by juvenile coho salmon (Oncorhynchus kisutch) in Oregon coastal streams. Canadian Journal of Fisheries and Aquatic Sciences 49: 783-789.
53. Oakley, K. L., L. P. Thomas, and S. G. Fancy. 2003. Guidelines for long-term monitoring protocols. Wildlife Society Bulletin 31: 1000-1003.
54. Oregon Coastal Salmon Restoration Initiative. 1997. The Oregon plan: restoring an Oregon legacy through cooperative efforts. Oregon Coastal Salmon Restoration Initiative, Salem. Available: hdl. handle. net/1957/4985.(April 2010).
55. Oregon Department of Forestry. 2010. Annual timber harvest report. Available: www.oregon.gov/ODF/index.shtml.(April 2010).
56. Piepho, H. P., and J. O. Ogutu. 2002. A simple mixed model for trend analysis in wildlife populations. Journal of Agricultural, Biological, and Environmental Statistics 7: 350-360.
57. Reeves, G. H., L. E. Benda, K. M. Burnett, P. A. Bisson, and J. R. Sedell. 1995. A disturbance-based ecosystem approach to maintaining and restoring freshwater habitats of evolutionarily significant units of anadromous salmonids in the Pacific Northwest. Pages 334-349 in J. L. Nielsen, editor. Evolution and the aquatic ecosystem: defining unique units in population conservation. American Fisheries Society, Symposium 17, Bethesda, Maryland.
58. Reeves, G. H., D. B. Hohler, D. P. Larsen, D. E. Busch, K. Katz, K. Reynolds, K. F. Stein, T. Atzet, P. Hays, and M. Tehan. 2004. Aquatic and riparian effectiveness monitoring program for the northwest forest plan. U.S. Fish Forest Service, Pacific Northwest Research Station, Technical Report PNW GTR-577.
59. Rodgers, J. D., K. K. Jones, A. G. Talabere, C. H. Stein, and E. H. Gilbert. 2005. Oregon coast coho habitat assessment, 1998-2003. Oregon Department of Fish and Wildlife, OPSW-ODFW-2005-5, Salem. Available: oregonstate. edu/dept/ODFW/freshwater/inventory/pdffiles/ODFWCoho HabitatAssessment1998-2003. pdf.(April 2010).
60. Roni, P., T. J. Beechie, R. E. Bilby, F. E. Leonetti, M. M. Pollock, and G. R. Pess. 2002. A review of stream restoration techniques and a hierarchical strategy for prioritizing restoration in Pacific Northwest watersheds. North American Journal of Fisheries Management 22: 1-20.
61. Rosenfeld, J., M. Porter, and E. Parkinson. 2000. Habitat factors affecting the abundance and distribution of juvenile cutthroat trout (Oncorhynchus clarki) and coho salmon (Oncorhynchus kitsutch). Canadian Journal of Fisheries and Aquatic Sciences 57: 766-774.
62. SAS (SAS Institute). 2000. The SAS system for windows, version 9.1. SAS Institute, Cary, North Carolina.
63. Satterthwaite, F. E. 1946. An approximate distribution of estimates of variance components. Biometrics Bulletin 2: 110-114.
64. Seavy, N. H., and M. H. Reynolds. 2007. Is statistical power to detect trends a good assessment of population monitoring? Biological Conservation 140: 187-191.
65. Spies, T. A., D. E. Hibbs, J. L. Ohmann, G. H. Reeves, R. J. Pabst, F. J. Swanson, C. Whitlock, J. A. Jones, B. C. Wemple, L. A. Parendes, and B. A. Schrader. 2002. The ecological basis of forest ecosystem management in the Oregon coast range. Pages 31-67 in S. D. Hobbs, J. P. Hayes, R. L. Johnson, G. H. Reeves, T. A. Spies, J. C. Tappeiner II, and G. E. Wells, editors. Forest and stream management in the Oregon Coast Range. Oregon State University Press, Corvallis.
66. Stevens, D. L., and A. R. Olsen. 2004. Spatially balanced sampling of natural resources. Journal of the American Statistical Association 99: 262-278.
67. Stow, C. A., S. R. Carpenter, K. E. Webster, and T. M. Frost. 1998. Longterm environmental monitoring: some perspectives from lakes. Ecological Applications 8: 269-276.
68. Suring, E., E. Brown, and M. Lewis. 2008. Assessment of Oregon coastal adult winter steelhead: redd surveys 2008. Oregon Department of Fish and Wildlife, Monitoring Program Report OPSW-ODFW-2008-09, Salem.
69. Suttle, K. B., M. E. Power, J. M. Levine, and C. McNeely. 2004. How fine sediment in riverbeds impairs growth and survival of juvenile salmonids. Ecological Application 14: 969-974.
70. Taylor, G. 1996. Big flood of February 1996. Oregon State University, Oregon Climate Service, Corvallis. Available: gcmd. nasa. gov/records/GCMD_OREG_CLIM_FLOOD_96. html. (January 2011).
71. Urquhart, N. S., and T. M. Kincaid. 1999. Designs for detecting trend from repeated surveys of ecological resources. Journal of Agricultural, Biological and Environmental Statistics 4: 404-414.
72. Urquhart, N. S., W. S. Overton, and D. S. Birkes. 1993. Comparing sampling designs for monitoring ecological status and trends: impact of temporal patterns. Pages 71-86 in V. Barnett and K. F. Turkman, editors. Statistics for the environment. Wiley, New York.
73. Urquhart, N. S., S. G. Paulsen, and D. P. Larsen. 1998. Monitoring for policyrelevant regional trends over time. Ecological Applications 8: 246-257.
74. VanLeeuwen, D. M., L. W. Murray, and N. S. Urquhart. 1996. A mixed model with both fixed and random trend components across time. Journal of Agricultural, Biological and Environmental Statistics 1: 435-453.
75. Van Strein, A. J., R. Van De Pavert, D. Moss, T. J. Yates, C. A. M. Van Swaay, and P. Vos. 1997. The statistical power of two butterfly monitoring schemes to detect trends. Journal of Applied Ecology 34: 817-828.
76. Wagner, T., D. B. Hayes, and M. T. Bremigan. 2006. Accounting for multilevel data structures in fisheries data using mixed models. Fisheries 31: 180-187.