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Volumn 50, Issue 20, 2011, Pages 4371-4381

A cleavage enzyme-cytometric bead array provides biochemical profiling of resistance mutations in HIV-1 Gag and protease

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL PROFILING; CATALYTIC EFFICIENCIES; CLEAVAGE SITES; ENZYMATIC CLEAVAGE; FLUORESCENT REPORTER; FUSION PROTEINS; HIV-1 PROTEASE; PROTEASE INHIBITOR; SITE LOCATION; SMALL MOLECULE INHIBITOR; SUBSTRATE STRUCTURE; SYNTHETIC PEPTIDE SUBSTRATE;

EID: 79956196738     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi200031m     Document Type: Article
Times cited : (10)

References (41)
  • 2
    • 0037803570 scopus 로고    scopus 로고
    • Human and mouse proteases: A comparative genomic approach
    • DOI 10.1038/nrg1111
    • Puente, X. S., Sanchez, L. M., Overall, C. M., and Lopez-Otin, C. (2003) Human and mouse proteases: a comparative genomic approach Nat. Rev. Genet. 4, 544-558 (Pubitemid 36781345)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.7 , pp. 544-558
    • Puente, X.S.1    Sanchez, L.M.2    Overall, C.M.3    Lopez-Otin, C.4
  • 3
    • 33748308883 scopus 로고    scopus 로고
    • Targeting proteases: Successes, failures and future prospects
    • DOI 10.1038/nrd2092, PII NRD2092
    • Turk, B. (2006) Targeting proteases: successes, failures and future prospects Nat. Rev. Drug Discovery 5, 785-799 (Pubitemid 44323703)
    • (2006) Nature Reviews Drug Discovery , vol.5 , Issue.9 , pp. 785-799
    • Turk, B.1
  • 4
    • 33845339435 scopus 로고    scopus 로고
    • Protease inhibitors in the clinic
    • Abbenante, G. and Fairlie, D. P. (2005) Protease inhibitors in the clinic Med. Chem. 1, 71-104
    • (2005) Med. Chem. , vol.1 , pp. 71-104
    • Abbenante, G.1    Fairlie, D.P.2
  • 5
    • 36749088862 scopus 로고    scopus 로고
    • HIV drug development: The next 25 years
    • DOI 10.1038/nrd2336, PII NRD2336
    • Flexner, C. (2007) HIV drug development: the next 25 years Nat. Rev. Drug Discovery 6, 959-966 (Pubitemid 350201786)
    • (2007) Nature Reviews Drug Discovery , vol.6 , Issue.12 , pp. 959-966
    • Flexner, C.1
  • 6
    • 2442657656 scopus 로고    scopus 로고
    • Identification of I50L as the signature atazanavir (ATV)-resistance mutation in treatment-naive HIV-1-infected patients receiving ATV-containing regimens
    • DOI 10.1086/386291
    • Colonno, R., Rose, R., McLaren, C., Thiry, A., Parkin, N., and Friborg, J. (2004) Identification of I50L as the signature atazanavir (ATV)-resistance mutation in treatment-naive HIV-1-infected patients receiving ATV-containing regimens J. Infect. Dis. 189, 1802-1810 (Pubitemid 38657216)
    • (2004) Journal of Infectious Diseases , vol.189 , Issue.10 , pp. 1802-1810
    • Colonno, R.1    Rose, R.2    McLaren, C.3    Thiry, A.4    Parkin, N.5    Friborg, J.6
  • 7
    • 0031946007 scopus 로고    scopus 로고
    • Loss of viral fitness associated with multiple Gag and Gag-Pol processing defects in human immunodeficiency virus type 1 variants selected for resistance to protease inhibitors in vivo
    • Zennou, V., Mammano, F., Paulous, S., Mathez, D., and Clavel, F. (1998) Loss of viral fitness associated with multiple Gag and Gag-Pol processing defects in human immunodeficiency virus type 1 variants selected for resistance to protease inhibitors in vivo J. Virol. 72, 3300-3306 (Pubitemid 28175575)
    • (1998) Journal of Virology , vol.72 , Issue.4 , pp. 3300-3306
    • Zennou, V.1    Mammano, F.2    Paulous, S.3    Mathez, D.4    Clavel, F.5
  • 10
    • 0032804864 scopus 로고    scopus 로고
    • Increased fitness of drug resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy
    • Nijhuis, M., Schuurman, R., de Jong, D., Erickson, J., Gustchina, E., Albert, J., Schipper, P., Gulnik, S., and Boucher, C. A. (1999) Increased fitness of drug resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy AIDS 13, 2349-2359
    • (1999) AIDS , vol.13 , pp. 2349-2359
    • Nijhuis, M.1    Schuurman, R.2    De Jong, D.3    Erickson, J.4    Gustchina, E.5    Albert, J.6    Schipper, P.7    Gulnik, S.8    Boucher, C.A.9
  • 12
    • 49049107892 scopus 로고    scopus 로고
    • Drug-associated changes in amino acid residues in Gag p2, p7(NC), and p6(Gag)/p6(Pol) in human immunodeficiency virus type 1 (HIV-1) display a dominant effect on replicative fitness and drug response
    • Ho, S. K., Coman, R. M., Bunger, J. C., Rose, S. L., OBrien, P., Munoz, I., Dunn, B. M., Sleasman, J. W., and Goodenow, M. M. (2008) Drug-associated changes in amino acid residues in Gag p2, p7(NC), and p6(Gag)/p6(Pol) in human immunodeficiency virus type 1 (HIV-1) display a dominant effect on replicative fitness and drug response Virology 378, 272-281
    • (2008) Virology , vol.378 , pp. 272-281
    • Ho, S.K.1    Coman, R.M.2    Bunger, J.C.3    Rose, S.L.4    Obrien, P.5    Munoz, I.6    Dunn, B.M.7    Sleasman, J.W.8    Goodenow, M.M.9
  • 13
    • 69449106744 scopus 로고    scopus 로고
    • Genetic determinants in HIV-1 Gag and Env V3 are related to viral response to combination antiretroviral therapy with a protease inhibitor
    • Ho, S. K., Perez, E. E., Rose, S. L., Coman, R. M., Lowe, A. C., Hou, W., Ma, C., Lawrence, R. M., Dunn, B. M., Sleasman, J. W., and Goodenow, M. M. (2009) Genetic determinants in HIV-1 Gag and Env V3 are related to viral response to combination antiretroviral therapy with a protease inhibitor AIDS 23, 1631-1640
    • (2009) AIDS , vol.23 , pp. 1631-1640
    • Ho, S.K.1    Perez, E.E.2    Rose, S.L.3    Coman, R.M.4    Lowe, A.C.5    Hou, W.6    Ma, C.7    Lawrence, R.M.8    Dunn, B.M.9    Sleasman, J.W.10    Goodenow, M.M.11
  • 15
    • 63449110982 scopus 로고    scopus 로고
    • Gag mutations strongly contribute to HIV-1 resistance to protease inhibitors in highly drug-experienced patients besides compensating for fitness loss
    • Dam, E., Quercia, R., Glass, B., Descamps, D., Launay, O., Duval, X., Krausslich, H. G., Hance, A. J., and Clavel, F. (2009) Gag mutations strongly contribute to HIV-1 resistance to protease inhibitors in highly drug-experienced patients besides compensating for fitness loss PLoS Pathog. 5 e1000345
    • (2009) PLoS Pathog. , vol.5
    • Dam, E.1    Quercia, R.2    Glass, B.3    Descamps, D.4    Launay, O.5    Duval, X.6    Krausslich, H.G.7    Hance, A.J.8    Clavel, F.9
  • 16
    • 0032537482 scopus 로고    scopus 로고
    • Resistance to HIV protease inhibitors: A comparison of enzyme inhibition and antiviral potency
    • DOI 10.1021/bi972555l
    • Klabe, R. M., Bacheler, L. T., Ala, P. J., Erickson-Viitanen, S., and Meek, J. L. (1998) Resistance to HIV protease inhibitors: a comparison of enzyme inhibition and antiviral potency Biochemistry 37, 8735-8742 (Pubitemid 28299611)
    • (1998) Biochemistry , vol.37 , Issue.24 , pp. 8735-8742
    • Klabe, R.M.1    Bacheler, L.T.2    Ala, P.J.3    Erickson-Viitanen, S.4    Meek, J.L.5
  • 17
    • 0034283345 scopus 로고    scopus 로고
    • How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease
    • Prabu-Jeyabalan, M., Nalivaika, E., and Schiffer, C. A. (2000) How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease J. Mol. Biol. 301, 1207-1220
    • (2000) J. Mol. Biol. , vol.301 , pp. 1207-1220
    • Prabu-Jeyabalan, M.1    Nalivaika, E.2    Schiffer, C.A.3
  • 18
    • 0036784575 scopus 로고    scopus 로고
    • Replacement of the P1 amino acid of human immunodeficiency virus type 1 Gag processing sites can inhibit or enhance the rate of cleavage by the viral protease
    • Pettit, S. C., Henderson, G. J., Schiffer, C. A., and Swanstrom, R. (2002) Replacement of the P1 amino acid of human immunodeficiency virus type 1 Gag processing sites can inhibit or enhance the rate of cleavage by the viral protease J. Virol. 76, 10226-10233
    • (2002) J. Virol. , vol.76 , pp. 10226-10233
    • Pettit, S.C.1    Henderson, G.J.2    Schiffer, C.A.3    Swanstrom, R.4
  • 19
    • 0029899093 scopus 로고    scopus 로고
    • Second locus involved in human immunodeficiency virus type 1 resistance to protease inhibitors
    • Doyon, L., Croteau, G., Thibeault, D., Poulin, F., Pilote, L., and Lamarre, D. (1996) Second locus involved in human immunodeficiency virus type 1 resistance to protease inhibitors J. Virol. 70, 3763-3769 (Pubitemid 26161824)
    • (1996) Journal of Virology , vol.70 , Issue.6 , pp. 3763-3769
    • Doyon, L.1    Croteau, G.2    Thibeault, D.3    Poulin, F.4    Pilote, L.5    Lamarre, D.6
  • 21
    • 0034284897 scopus 로고    scopus 로고
    • Polymorphism of HIV type 1 gag p7/p1 and p1/p6 cleavage sites: Clinical significance and implications for resistance to protease inhibitors
    • Bally, F., Martinez, R., Peters, S., Sudre, P., and Telenti, A. (2000) Polymorphism of HIV type 1 gag p7/p1 and p1/p6 cleavage sites: clinical significance and implications for resistance to protease inhibitors AIDS Res. Hum. Retroviruses 16, 1209-1213
    • (2000) AIDS Res. Hum. Retroviruses , vol.16 , pp. 1209-1213
    • Bally, F.1    Martinez, R.2    Peters, S.3    Sudre, P.4    Telenti, A.5
  • 22
    • 33745792627 scopus 로고    scopus 로고
    • Microsphere-based protease assays and screening application for lethal factor and factor Xa
    • DOI 10.1002/cyto.a.20268
    • Saunders, M. J., Kim, H., Woods, T. A., Nolan, J. P., Sklar, L. A., Edwards, B. S., and Graves, S. W. (2006) Microsphere-based protease assays and screening application for lethal factor and factor Xa Cytometry, Part A 69, 342-352 (Pubitemid 44651347)
    • (2006) Cytometry Part A , vol.69 , Issue.5 , pp. 342-352
    • Saunders, M.J.1    Kim, H.2    Woods, T.A.3    Nolan, J.P.4    Sklar, L.A.5    Edwards, B.S.6    Graves, S.W.7
  • 23
    • 0014454095 scopus 로고
    • Kinetics of the reversible inhibition of enzyme-catalysed reactions by tight-binding inhibitors
    • Morrison, J. F. (1969) Kinetics of the reversible inhibition of enzyme-catalysed reactions by tight-binding inhibitors Biochim. Biophys. Acta 185, 269-286
    • (1969) Biochim. Biophys. Acta , vol.185 , pp. 269-286
    • Morrison, J.F.1
  • 24
    • 54549113415 scopus 로고    scopus 로고
    • A copper(I)-catalyzed 1,2,3-triazole azide-alkyne click compound is a potent inhibitor of a multidrug-resistant HIV-1 protease variant
    • Giffin, M. J., Heaslet, H., Brik, A., Lin, Y. C., Cauvi, G., Wong, C. H., McRee, D. E., Elder, J. H., Stout, C. D., and Torbett, B. E. (2008) A copper(I)-catalyzed 1,2,3-triazole azide-alkyne click compound is a potent inhibitor of a multidrug-resistant HIV-1 protease variant J. Med. Chem. 51, 6263-6270
    • (2008) J. Med. Chem. , vol.51 , pp. 6263-6270
    • Giffin, M.J.1    Heaslet, H.2    Brik, A.3    Lin, Y.C.4    Cauvi, G.5    Wong, C.H.6    McRee, D.E.7    Elder, J.H.8    Stout, C.D.9    Torbett, B.E.10
  • 25
    • 0035340099 scopus 로고    scopus 로고
    • High throughput flow cytometry
    • DOI 10.1002/10 97-0320(20 010501)44:1<8 3::AID-CYTO 1085>3.0.CO;2-O
    • Kuckuck, F. W., Edwards, B. S., and Sklar, L. A. (2001) High throughput flow cytometry Interface 90, 83-90 (Pubitemid 32434006)
    • (2001) Cytometry , vol.44 , Issue.1 , pp. 83-90
    • Kuckuck, F.W.1    Edwards, B.S.2    Sklar, L.A.3
  • 26
    • 45749133114 scopus 로고    scopus 로고
    • Flow cytometric detection of proteolysis in peptide libraries synthesised on optically encoded supports
    • DOI 10.1039/b718513h
    • Surawski, P. P., Battersby, B. J., Lawrie, G. A., Ford, K., Ruhmann, A., Marcon, L., Kozak, D., and Trau, M. (2008) Flow cytometric detection of proteolysis in peptide libraries synthesised on optically encoded supports Mol. BioSyst. 4, 774-778 (Pubitemid 351871750)
    • (2008) Molecular BioSystems , vol.4 , Issue.7 , pp. 774-778
    • Surawski, P.P.T.1    Battersby, B.J.2    Lawrie, G.A.3    Ford, K.4    Ruhmann, A.5    Marcon, L.6    Kozak, D.7    Trau, M.8
  • 27
    • 57349153440 scopus 로고    scopus 로고
    • Expression and purification of GST fusion proteins
    • Chapter 6, Unit 6 6
    • Harper, S. and Speicher, D. W. (2008) Expression and purification of GST fusion proteins. Curr. Protoc. Protein Sci. Chapter 6, Unit 6 6.
    • (2008) Curr. Protoc. Protein Sci.
    • Harper, S.1    Speicher, D.W.2
  • 28
    • 85047517856 scopus 로고    scopus 로고
    • A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological application
    • Nagai, T., Ibata, K., Park, E. S., Kubota, M., Mikoshiba, K., and Miyawaki, A. (2001) A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological application Nature 20, 1585-1588
    • (2001) Nature , vol.20 , pp. 1585-1588
    • Nagai, T.1    Ibata, K.2    Park, E.S.3    Kubota, M.4    Mikoshiba, K.5    Miyawaki, A.6
  • 29
    • 30944467113 scopus 로고    scopus 로고
    • A guide to choosing fluorescent proteins
    • DOI 10.1038/nmeth819, PII N819
    • Shaner, N. C., Steinbach, P. A., and Tsien, R. Y. (2005) A guide to choosing fluorescent proteins Nat. Methods 2, 905-909 (Pubitemid 43108726)
    • (2005) Nature Methods , vol.2 , Issue.12 , pp. 905-909
    • Shaner, N.C.1    Steinbach, P.A.2    Tsien, R.Y.3
  • 30
    • 0037012847 scopus 로고    scopus 로고
    • Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells
    • DOI 10.1126/science.1068539
    • Zacharias, D. A., Violin, J. D., Newton, A. C., and Tsien, R. Y. (2002) Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells Science 296, 913-916 (Pubitemid 34464897)
    • (2002) Science , vol.296 , Issue.5569 , pp. 913-916
    • Zacharias, D.A.1    Violin, J.D.2    Newton, A.C.3    Tsien, R.Y.4
  • 31
    • 0036784575 scopus 로고    scopus 로고
    • Replacement of the P1 amino acid of human immunodeficiency virus type 1 Gag processing sites can inhibit or enhance the rate of cleavage by the viral protease
    • Pettit, S. C., Henderson, G. J., Schiffer, C. A., and Swanstrom, R. (2002) Replacement of the P1 amino acid of human immunodeficiency virus type 1 Gag processing sites can inhibit or enhance the rate of cleavage by the viral protease J. Virol. 76, 10226-10233
    • (2002) J. Virol. , vol.76 , pp. 10226-10233
    • Pettit, S.C.1    Henderson, G.J.2    Schiffer, C.A.3    Swanstrom, R.4
  • 32
    • 69249216636 scopus 로고    scopus 로고
    • A strongly transdominant mutation in the human immunodeficiency virus type 1 gag gene defines an Achilles heel in the virus life cycle
    • Lee, S. K., Harris, J., and Swanstrom, R. (2009) A strongly transdominant mutation in the human immunodeficiency virus type 1 gag gene defines an Achilles heel in the virus life cycle J. Virol. 83, 8536-8543
    • (2009) J. Virol. , vol.83 , pp. 8536-8543
    • Lee, S.K.1    Harris, J.2    Swanstrom, R.3
  • 33
    • 67649628164 scopus 로고    scopus 로고
    • New approaches to HIV protease inhibitor drug design II: Testing the substrate envelope hypothesis to avoid drug resistance and discover robust inhibitors
    • Nalam, M. N. and Schiffer, C. A. (2008) New approaches to HIV protease inhibitor drug design II: testing the substrate envelope hypothesis to avoid drug resistance and discover robust inhibitors Curr. Opin. HIV AIDS 3, 642-646
    • (2008) Curr. Opin. HIV AIDS , vol.3 , pp. 642-646
    • Nalam, M.N.1    Schiffer, C.A.2
  • 34
    • 0034843933 scopus 로고    scopus 로고
    • Viral evolution in response to the broad-based retroviral protease inhibitor TL-3
    • DOI 10.1128/JVI.75.19.9502-9508.2001
    • Buhler, B., Lin, Y. C., Morris, G., Olson, A. J., Wong, C. H., Richman, D. D., Elder, J. H., and Torbett, B. E. (2001) Viral evolution in response to the broad-based retroviral protease inhibitor TL-3 J. Virol. 75, 9502-9508 (Pubitemid 32851952)
    • (2001) Journal of Virology , vol.75 , Issue.19 , pp. 9502-9508
    • Buhler, B.1    Lin, Y.2    Morris, G.3    Olson, A.J.4    Wong, C.5    Richman, D.D.6    Elder, J.H.7    Torbett, B.E.8
  • 35
    • 0028854676 scopus 로고
    • Selection and analysis of human immunodeficiency virus type 1 variants with increased resistance to ABT-538, a novel protease inhibitor
    • Markowitz, M., Mo, H., Kempf, D. J., Norbeck, D. W., Bhat, T. N., Erickson, J. W., and Ho, D. D. (1995) Selection and analysis of human immunodeficiency virus type 1 variants with increased resistance to ABT-538, a novel protease inhibitor J. Virol. 69, 701-706
    • (1995) J. Virol. , vol.69 , pp. 701-706
    • Markowitz, M.1    Mo, H.2    Kempf, D.J.3    Norbeck, D.W.4    Bhat, T.N.5    Erickson, J.W.6    Ho, D.D.7
  • 36
    • 0037469148 scopus 로고    scopus 로고
    • A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance
    • DOI 10.1021/bi027019u
    • Muzammil, S., Ross, P., and Freire, E. (2003) A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance Biochemistry 42, 631-638 (Pubitemid 36133287)
    • (2003) Biochemistry , vol.42 , Issue.3 , pp. 631-638
    • Muzammil, S.1    Ross, P.2    Freire, E.3
  • 37
    • 0942290560 scopus 로고    scopus 로고
    • Gag Non-Cleavage Site Mutations Contribute to Full Recovery of Viral Fitness in Protease Inhibitor-Resistant Human Immunodeficiency Virus Type 1
    • DOI 10.1128/AAC.48.2.444-452.2004
    • Myint, L., Matsuda, M., Matsuda, Z., Yokomaku, Y., Chiba, T., Okano, A., Yamada, K., and Sugiura, W. (2004) Gag non-cleavage site mutations contribute to full recovery of viral fitness in protease inhibitor-resistant human immunodeficiency virus type 1 Antimicrob. Agents Chemother. 48, 444-452 (Pubitemid 38141700)
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , Issue.2 , pp. 444-452
    • Myint, L.1    Matsuda, M.2    Matsuda, Z.3    Yokomaku, Y.4    Chiba, T.5    Okano, A.6    Yamada, K.7    Sugiura, W.8
  • 38
    • 70349482953 scopus 로고    scopus 로고
    • Novel trends in high-throughput screening
    • Mayr, L. M. and Bojanic, D. (2009) Novel trends in high-throughput screening Curr. Opin. Pharmacol. 9, 580-588
    • (2009) Curr. Opin. Pharmacol. , vol.9 , pp. 580-588
    • Mayr, L.M.1    Bojanic, D.2
  • 39
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • DOI 10.1177/108705719900400206
    • Zhang, J. H., Chung, T. D., and Oldenburg, K. R. (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays J. Biomol. Screening 4, 67-73 (Pubitemid 29278954)
    • (1999) Journal of Biomolecular Screening , vol.4 , Issue.2 , pp. 67-73
    • Zhang, J.-H.1    Chung, T.D.Y.2    Oldenburg, K.R.3
  • 40
    • 0042697152 scopus 로고    scopus 로고
    • Mechanistic considerations in high-throughput screening
    • DOI 10.1016/S0003-2697(03)00346-4
    • Copeland, R. A. (2003) Mechanistic considerations in high-throughput screening Anal. Biochem. 320, 1-12 (Pubitemid 36937062)
    • (2003) Analytical Biochemistry , vol.320 , Issue.1 , pp. 1-12
    • Copeland, R.A.1
  • 41
    • 33745188660 scopus 로고    scopus 로고
    • Screening in a spirit haunted world
    • Shoichet, B. K. (2006) Screening in a spirit haunted world Drug Discovery Today 11, 607-615
    • (2006) Drug Discovery Today , vol.11 , pp. 607-615
    • Shoichet, B.K.1


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