메뉴 건너뛰기




Volumn 11, Issue , 2011, Pages

Atypical epigenetic mark in an atypical location: Cytosine methylation at asymmetric (CNN) sites within the body of a non-repetitive tomato gene

Author keywords

Epigeneticsasymmetric methylationAsr1water stress; Tomato

Indexed keywords

ARABIDOPSIS; EUKARYOTA; LYCOPERSICON ESCULENTUM; MAMMALIA;

EID: 79956192328     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-11-94     Document Type: Article
Times cited : (47)

References (48)
  • 1
    • 78049414227 scopus 로고    scopus 로고
    • Epigenetic reprogramming in plant and animal development
    • 10.1126/science.1190614, 2989926, 21030646
    • Feng S, Jacobsen SE, Reik W. Epigenetic reprogramming in plant and animal development. Science 2010, 330:622-627. 10.1126/science.1190614, 2989926, 21030646.
    • (2010) Science , vol.330 , pp. 622-627
    • Feng, S.1    Jacobsen, S.E.2    Reik, W.3
  • 2
    • 74549137524 scopus 로고    scopus 로고
    • Unlocking the Arabidopsis epigenome
    • 10.4161/epi.4.8.10347, 19934651
    • Reinders J, Paszkowski J. Unlocking the Arabidopsis epigenome. Epigenetics 2009, 4:557-563. 10.4161/epi.4.8.10347, 19934651.
    • (2009) Epigenetics , vol.4 , pp. 557-563
    • Reinders, J.1    Paszkowski, J.2
  • 3
    • 76549102018 scopus 로고    scopus 로고
    • DNA cytosine methylation in plant development
    • 10.1016/S1673-8527(09)60020-5, 20171573
    • Zhang M, Kimatu JN, Xu K, Liu B. DNA cytosine methylation in plant development. J Genet Genomics 2010, 37:1-12. 10.1016/S1673-8527(09)60020-5, 20171573.
    • (2010) J Genet Genomics , vol.37 , pp. 1-12
    • Zhang, M.1    Kimatu, J.N.2    Xu, K.3    Liu, B.4
  • 4
    • 34547751795 scopus 로고    scopus 로고
    • Epigenetics inheritance in rice plants
    • 10.1093/aob/mcm110, 2735323, 17576658
    • Akimoto K, Katakami H, Kim HJ, Ogawa E, Sano CM, Wada Y, Sano H. Epigenetics inheritance in rice plants. Ann Bot 2007, 100:205-217. 10.1093/aob/mcm110, 2735323, 17576658.
    • (2007) Ann Bot , vol.100 , pp. 205-217
    • Akimoto, K.1    Katakami, H.2    Kim, H.J.3    Ogawa, E.4    Sano, C.M.5    Wada, Y.6    Sano, H.7
  • 5
    • 66149176899 scopus 로고    scopus 로고
    • Genome-wide and organ-specific landscapes of epigenetics modifications and their relationships to mRNA and small RNA transcriptomes in maize
    • 10.1105/tpc.109.065714, 2685623, 19376930
    • Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, Deng XW. Genome-wide and organ-specific landscapes of epigenetics modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 2009, 21:1053-1069. 10.1105/tpc.109.065714, 2685623, 19376930.
    • (2009) Plant Cell , vol.21 , pp. 1053-1069
    • Wang, X.1    Elling, A.A.2    Li, X.3    Li, N.4    Peng, Z.5    He, G.6    Sun, H.7    Qi, Y.8    Liu, X.S.9    Deng, X.W.10
  • 6
    • 77954946640 scopus 로고    scopus 로고
    • Epigenetic performers in plants
    • 10.1111/j.1440-169X.2010.01192.x, 20646028
    • Chen M, Lv S, Meng Y. Epigenetic performers in plants. Dev Growth Differ 2010, 52:555-566. 10.1111/j.1440-169X.2010.01192.x, 20646028.
    • (2010) Dev Growth Differ , vol.52 , pp. 555-566
    • Chen, M.1    Lv, S.2    Meng, Y.3
  • 7
    • 79957545864 scopus 로고    scopus 로고
    • DNA methylation systems and targets in plants
    • Meyer P. DNA methylation systems and targets in plants. FEBS Lett
    • FEBS Lett
    • Meyer, P.1
  • 8
    • 0029738387 scopus 로고    scopus 로고
    • Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development
    • 10.1073/pnas.93.16.8449, 38691, 8710891
    • Finnegan EJ, Peacock WJ, Dennis ES. Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci USA 1996, 93:8449-8454. 10.1073/pnas.93.16.8449, 38691, 8710891.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 8449-8454
    • Finnegan, E.J.1    Peacock, W.J.2    Dennis, E.S.3
  • 9
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • 10.1038/nature731, 11898023
    • Jackson JP, Lindroth AM, Cao X, Jacobsen SE. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 2002, 416:556-560. 10.1038/nature731, 11898023.
    • (2002) Nature , vol.416 , pp. 556-560
    • Jackson, J.P.1    Lindroth, A.M.2    Cao, X.3    Jacobsen, S.E.4
  • 10
    • 0037046810 scopus 로고    scopus 로고
    • Role of the Arabidopsis DRM methyltransferases in the novo DNA methylation and gene silencing
    • 10.1016/S0960-9822(02)00925-9, 12121623
    • Cao X, Jacobsen SE. Role of the Arabidopsis DRM methyltransferases in the novo DNA methylation and gene silencing. Curr Biol 2002, 12:1138-1144. 10.1016/S0960-9822(02)00925-9, 12121623.
    • (2002) Curr Biol , vol.12 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 11
    • 42549085238 scopus 로고    scopus 로고
    • The epigenetic landscape of plants
    • 10.1126/science.1153996, 18436779
    • Zhang X. The epigenetic landscape of plants. Science 2008, 320:489-492. 10.1126/science.1153996, 18436779.
    • (2008) Science , vol.320 , pp. 489-492
    • Zhang, X.1
  • 12
    • 47249122112 scopus 로고    scopus 로고
    • Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening
    • 10.1007/s00425-008-0743-z, 18488247
    • Teyssier E, Bernacchia G, Maury S, How Kit A, Stammitti-Bert L, Rolin D, Gallusci P. Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening. Planta 2008, 228:391-399. 10.1007/s00425-008-0743-z, 18488247.
    • (2008) Planta , vol.228 , pp. 391-399
    • Teyssier, E.1    Bernacchia, G.2    Maury, S.3    How Kit, A.4    Stammitti-Bert, L.5    Rolin, D.6    Gallusci, P.7
  • 14
    • 33746488455 scopus 로고    scopus 로고
    • Evolutionary history of the Asr gene family
    • Frankel N, Carrari F, Hasson E, Iusem ND. Evolutionary history of the Asr gene family. Gene 2006, 378:74-83.
    • (2006) Gene , vol.378 , pp. 74-83
    • Frankel, N.1    Carrari, F.2    Hasson, E.3    Iusem, N.D.4
  • 16
    • 42149185104 scopus 로고    scopus 로고
    • Synergism between the chaperone-like activity of the stress regulated ASR1 protein and the osmolyte glycine-betaine
    • 10.1007/s00425-008-0693-5, 18270732
    • Konrad Z, Bar-Zvi D. Synergism between the chaperone-like activity of the stress regulated ASR1 protein and the osmolyte glycine-betaine. Planta 2008, 227:1213-1219. 10.1007/s00425-008-0693-5, 18270732.
    • (2008) Planta , vol.227 , pp. 1213-1219
    • Konrad, Z.1    Bar-Zvi, D.2
  • 17
    • 33845438869 scopus 로고    scopus 로고
    • Dimerization and DNA-binding of ASR1, a small hydrophilic protein abundant in plant tissues suffering from water loss
    • 10.1016/j.bbrc.2006.11.115, 17157822
    • Maskin L, Frankel N, Gudesblat G, Demergasso MJ, Pietrasanta L, Iusem ND. Dimerization and DNA-binding of ASR1, a small hydrophilic protein abundant in plant tissues suffering from water loss. Biochem Biophys Res Commun 2007, 352:831-835. 10.1016/j.bbrc.2006.11.115, 17157822.
    • (2007) Biochem Biophys Res Commun , vol.352 , pp. 831-835
    • Maskin, L.1    Frankel, N.2    Gudesblat, G.3    Demergasso, M.J.4    Pietrasanta, L.5    Iusem, N.D.6
  • 19
    • 0036008767 scopus 로고    scopus 로고
    • Epialleles - a source of random variation in times of stress
    • 10.1016/S1369-5266(02)00233-9, 11856603
    • Finnegan EJ. Epialleles - a source of random variation in times of stress. Curr Opin Plant Biol 2002, 5:101-106. 10.1016/S1369-5266(02)00233-9, 11856603.
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 101-106
    • Finnegan, E.J.1
  • 20
    • 39749120481 scopus 로고    scopus 로고
    • Epigenetic control of plant stress response
    • 10.1002/em.20347, 17948278
    • Boyko A, Kovalchuk I. Epigenetic control of plant stress response. Environ Mol Mutagen 2008, 49:61-72. 10.1002/em.20347, 17948278.
    • (2008) Environ Mol Mutagen , vol.49 , pp. 61-72
    • Boyko, A.1    Kovalchuk, I.2
  • 21
    • 62349111195 scopus 로고    scopus 로고
    • Epigenetic regulation of stress responses in plants
    • 10.1016/j.pbi.2008.12.006, 19179104
    • Chinnusamy V, Zhu JK. Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol 2009, 12:133-139. 10.1016/j.pbi.2008.12.006, 19179104.
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 133-139
    • Chinnusamy, V.1    Zhu, J.K.2
  • 22
    • 77949864217 scopus 로고    scopus 로고
    • Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins
    • 10.1371/journal.pone.0009514, 2831073, 20209086
    • Boyko A, Blevins T, Yao Y, Golubov A, Bilichak A, IInytskyy Y, Hollander J, Meins F, Kovalchuk I. Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins. PLos One 2010, 5:e9514. 10.1371/journal.pone.0009514, 2831073, 20209086.
    • (2010) PLos One , vol.5
    • Boyko, A.1    Blevins, T.2    Yao, Y.3    Golubov, A.4    Bilichak, A.5    IInytskyy, Y.6    Hollander, J.7    Meins, F.8    Kovalchuk, I.9
  • 23
    • 34547528183 scopus 로고    scopus 로고
    • DNA methylation: bisulphite modification and analysis
    • 10.1038/nprot.2006.324, 17406479
    • Clark SJ, Statham A, Stirzaker C, Molloy PL, Frommer M. DNA methylation: bisulphite modification and analysis. Nat Protoc 2006, 1:2353-2364. 10.1038/nprot.2006.324, 17406479.
    • (2006) Nat Protoc , vol.1 , pp. 2353-2364
    • Clark, S.J.1    Statham, A.2    Stirzaker, C.3    Molloy, P.L.4    Frommer, M.5
  • 24
    • 79955124012 scopus 로고    scopus 로고
    • Epigenetics modifications in plants: an evolutionary perspective
    • 10.1016/j.pbi.2010.12.002, 21233005
    • Feng S, Jacobsen SE. Epigenetics modifications in plants: an evolutionary perspective. Curr Opin Plant Biol 2011, 14:179-186. 10.1016/j.pbi.2010.12.002, 21233005.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 179-186
    • Feng, S.1    Jacobsen, S.E.2
  • 26
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • 10.1016/j.cell.2008.03.029, 2723732, 18423832
    • Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133:523-536. 10.1016/j.cell.2008.03.029, 2723732, 18423832.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1    O'Malley, R.C.2    Tonti-Filippini, J.3    Gregory, B.D.4    Berry, C.C.5    Millar, A.H.6    Ecker, J.R.7
  • 27
    • 60849099327 scopus 로고    scopus 로고
    • RNA-directed DNA methylation induces transcriptional activation in plants
    • 10.1073/pnas.0809294106, 2629447, 19164525
    • Shibuya K, Fukushima S, Takatsuji H. RNA-directed DNA methylation induces transcriptional activation in plants. Proc Natl Acad Sci USA 2009, 106:1660-1665. 10.1073/pnas.0809294106, 2629447, 19164525.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 1660-1665
    • Shibuya, K.1    Fukushima, S.2    Takatsuji, H.3
  • 29
    • 45349108094 scopus 로고    scopus 로고
    • Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading
    • 10.1101/gad.1667808, 2428058, 18559476
    • Henderson IR, Jacobsen SE. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev 2008, 22:1597-1606. 10.1101/gad.1667808, 2428058, 18559476.
    • (2008) Genes Dev , vol.22 , pp. 1597-1606
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 30
    • 66449110558 scopus 로고    scopus 로고
    • Determining the conservation of DNA methylation in Arabidopsis
    • 10.4161/epi.4.2.8214, 19384058
    • Widman N, Jacobsen SE, Pellegrini M. Determining the conservation of DNA methylation in Arabidopsis. Epigenetics 2009, 4:119-124. 10.4161/epi.4.2.8214, 19384058.
    • (2009) Epigenetics , vol.4 , pp. 119-124
    • Widman, N.1    Jacobsen, S.E.2    Pellegrini, M.3
  • 31
    • 0031025670 scopus 로고    scopus 로고
    • Methylation of cytosines in nonconventional methylation acceptor sites can contribute to reduced gene expression
    • 10.1007/s004380050360, 9065691
    • Diéguez MJ, Bellotto M, Afsar K, Mittelsten Scheid O, Paszkowski J. Methylation of cytosines in nonconventional methylation acceptor sites can contribute to reduced gene expression. Mol Gen Genet 1997, 253:581-588. 10.1007/s004380050360, 9065691.
    • (1997) Mol Gen Genet , vol.253 , pp. 581-588
    • Diéguez, M.J.1    Bellotto, M.2    Afsar, K.3    Mittelsten Scheid, O.4    Paszkowski, J.5
  • 33
    • 33846931283 scopus 로고    scopus 로고
    • The SRA methyl-cytosine-binding domain links DNA and histone methylation
    • 10.1016/j.cub.2007.01.009, 1850948, 17239600
    • Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol 2007, 17:379-384. 10.1016/j.cub.2007.01.009, 1850948, 17239600.
    • (2007) Curr Biol , vol.17 , pp. 379-384
    • Johnson, L.M.1    Bostick, M.2    Zhang, X.3    Kraft, E.4    Henderson, I.5    Callis, J.6    Jacobsen, S.E.7
  • 34
    • 33846961476 scopus 로고    scopus 로고
    • VIM1, a methylcitosine-binding protein required for centromeric heterocromatinization
    • 10.1101/gad.1512007, 1785122, 17242155
    • Woo HR, Pontes O, Pikaard CS, Richards EJ. VIM1, a methylcitosine-binding protein required for centromeric heterocromatinization. Genes Dev 2007, 21:267-277. 10.1101/gad.1512007, 1785122, 17242155.
    • (2007) Genes Dev , vol.21 , pp. 267-277
    • Woo, H.R.1    Pontes, O.2    Pikaard, C.S.3    Richards, E.J.4
  • 35
    • 57149115354 scopus 로고    scopus 로고
    • SRA-domain proteins required for DRM2-mediated de novo DNA methylation
    • 10.1371/journal.pgen.1000280, 2582956, 19043555
    • Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet 2008, 4:e1000280. 10.1371/journal.pgen.1000280, 2582956, 19043555.
    • (2008) PLoS Genet , vol.4
    • Johnson, L.M.1    Law, J.A.2    Khattar, A.3    Henderson, I.R.4    Jacobsen, S.E.5
  • 37
    • 52649099036 scopus 로고    scopus 로고
    • Natural variation in DNA methylation in ribosomal RNA genes of Arabidopsis thaliana
    • 10.1186/1471-2229-8-92, 2551617, 18783613
    • Woo HR, Richards EJ. Natural variation in DNA methylation in ribosomal RNA genes of Arabidopsis thaliana. BMC Plant Biol 2008, 8:92. 10.1186/1471-2229-8-92, 2551617, 18783613.
    • (2008) BMC Plant Biol , vol.8 , pp. 92
    • Woo, H.R.1    Richards, E.J.2
  • 38
    • 65349171662 scopus 로고    scopus 로고
    • An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
    • 10.1038/emboj.2009.59, 2653724, 19262562
    • Miura A, Nakamura M, Inagaki S, Kobayashi A, Saze H, Kakutani T. An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J 2009, 28:1078-1086. 10.1038/emboj.2009.59, 2653724, 19262562.
    • (2009) EMBO J , vol.28 , pp. 1078-1086
    • Miura, A.1    Nakamura, M.2    Inagaki, S.3    Kobayashi, A.4    Saze, H.5    Kakutani, T.6
  • 40
    • 79952846249 scopus 로고    scopus 로고
    • Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)
    • 10.1093/jxb/erq391, 3060682, 21193578
    • Wang WS, Pan YJ, Zhao XQ, Dwivedi D, Zhu LH, Ali J, Fu BY, Li ZK. Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.). J Exp Bot 2011, 62:1951-1960. 10.1093/jxb/erq391, 3060682, 21193578.
    • (2011) J Exp Bot , vol.62 , pp. 1951-1960
    • Wang, W.S.1    Pan, Y.J.2    Zhao, X.Q.3    Dwivedi, D.4    Zhu, L.H.5    Ali, J.6    Fu, B.Y.7    Li, Z.K.8
  • 41
    • 34249330696 scopus 로고    scopus 로고
    • Epigenetic inheritance in plants
    • 10.1038/nature05917, 17522675
    • Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature 2007, 447:418-424. 10.1038/nature05917, 17522675.
    • (2007) Nature , vol.447 , pp. 418-424
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 42
    • 34249798697 scopus 로고    scopus 로고
    • DNA methylation dynamics in plant genomes
    • Gehring M, Henikoff S. DNA methylation dynamics in plant genomes. Biochem Biophys Acta 2007, 1769:276-286.
    • (2007) Biochem Biophys Acta , vol.1769 , pp. 276-286
    • Gehring, M.1    Henikoff, S.2
  • 43
    • 0000881217 scopus 로고    scopus 로고
    • Granule-bound starch syntase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. Section Lycopersicon [Mill.] Wettst. subsection Lycopersicon)
    • Peralta IE, Spooner DM. Granule-bound starch syntase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. Section Lycopersicon [Mill.] Wettst. subsection Lycopersicon). Am J Bot 2001, 88:1888-1902.
    • (2001) Am J Bot , vol.88 , pp. 1888-1902
    • Peralta, I.E.1    Spooner, D.M.2
  • 45
    • 69949106668 scopus 로고    scopus 로고
    • A new approach to primer design for the control of PCR bias in methylation studies
    • 10.1186/1756-0500-1-54, 2525644, 18710507
    • Wojdacz TK, Hansen LL, Dobrovic A. A new approach to primer design for the control of PCR bias in methylation studies. BMC Res Notes 2008, 1:54. 10.1186/1756-0500-1-54, 2525644, 18710507.
    • (2008) BMC Res Notes , vol.1 , pp. 54
    • Wojdacz, T.K.1    Hansen, L.L.2    Dobrovic, A.3
  • 46
    • 52649126232 scopus 로고    scopus 로고
    • Kismeth: Analyzer of plant methylation states through bisulfite sequencing
    • 10.1186/1471-2105-9-371, 2553349, 18786255
    • Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R. Kismeth: Analyzer of plant methylation states through bisulfite sequencing. BMC Bioinformatics 2008, 9:371. 10.1186/1471-2105-9-371, 2553349, 18786255.
    • (2008) BMC Bioinformatics , vol.9 , pp. 371
    • Gruntman, E.1    Qi, Y.2    Slotkin, R.K.3    Roeder, T.4    Martienssen, R.A.5    Sachidanandam, R.6
  • 47
    • 57649166523 scopus 로고    scopus 로고
    • VarDetect: a nucleotide sequence variation exploratory tool
    • 10.1186/1471-2105-9-S12-S9, 2638149, 19091032
    • Ngamphiw C, Kulawonganunchai S, Assawamakin A, Jenwitheesuk E, Tongsima S. VarDetect: a nucleotide sequence variation exploratory tool. BMC Bioinformatics 2008, 9(Suppl 12):S9. 10.1186/1471-2105-9-S12-S9, 2638149, 19091032.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL 12
    • Ngamphiw, C.1    Kulawonganunchai, S.2    Assawamakin, A.3    Jenwitheesuk, E.4    Tongsima, S.5
  • 48
    • 77950668357 scopus 로고    scopus 로고
    • Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato
    • 10.1186/1746-4811-6-11, 2859366, 20380723
    • Ricardi MM, González RM, Iusem ND. Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato. Plant Methods 2010, 6:11. 10.1186/1746-4811-6-11, 2859366, 20380723.
    • (2010) Plant Methods , vol.6 , pp. 11
    • Ricardi, M.M.1    González, R.M.2    Iusem, N.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.