Evolutionary history of the Asr gene family

Gene

Volumn 378, Issue 1-2, 2006, Pages 74-83

  Frankel, Nicolás ^a   Carrari, Fernando ^b   Hasson, Esteban ^c   Iusem, Norberto D ^a  

^a INSTITUTO DE FISIOLOGÍA   (Argentina)

^b INSTITUTO NACIONAL DE TECNOLOGÍA AGROPECUARIA INTA   (Argentina)

^c UNIVERSIDAD DE BUENOS AIRES   (Argentina)

Author keywords

Codon usage; Expression pattern; Gene conversion; Lycopersicon; Water stress

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CODON USAGE; FRUIT RIPENING; GENE ACTIVATION; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC VARIABILITY; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PARALOGY; PLANT STRESS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; TOMATO; TRANSCRIPTION REGULATION; UPREGULATION; WATER STRESS;

AMINO ACID SEQUENCE; BASE SEQUENCE; CODON; DNA, PLANT; EVOLUTION, MOLECULAR; GENE EXPRESSION; GENES, PLANT; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; ORYZA SATIVA; PHYLOGENY; PLANT PROTEINS; PLANTS; SEQUENCE HOMOLOGY, AMINO ACID; SOLANACEAE;

EMBRYOPHYTA; LYCOPERSICON; LYCOPERSICON ESCULENTUM;

EID: 33746488455     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.05.010     Document Type: Article

References (32)

1. Akashi H. Gene expression and molecular evolution. Curr. Opin. Genet. Dev. 11 (2001) 660-666
2. Akashi H., and Eyre-Walker A. Translational selection and molecular evolution. Curr. Opin. Genet. Dev. 8 (1998) 688-693
3. Alba R., Kelmenson P.M., Cordonnier-Pratt M.M., and Pratt L.H. The phytochrome gene family in tomato and the rapid differential evolution of this family in angiosperms. Mol. Biol. Evol. 17 (2000) 362-373
4. Bovy A., et al. High-flavonol tomatoes resulting from the heterologous expression of the maize transcription factor genes LC and C1. Plant Cell 14 (2002) 2509-2526
5. Cakir B., Agasse A., Gaillard C., Saumonneau A., Delrot S., and Atanassova R. A grape ASR protein involved in sugar and abscisic acid signaling. Plant Cell 15 (2003) 2165-2180
6. Chiapello H., Lisacek F., Caboche M., and Henaut A. Codon usage and gene function are related in sequences of Arabidopsis thaliana. Gene 209 (1998) GC1-GC38
7. Dóczi R., Kondrak M., Kovacs G., Beczner F., and Banfalvi Z. Conservation of the drought-inducible DS2 genes and divergences from their ASR paralogues in solanaceous species. Plant Physiol. Biochem. 43 (2005) 269-276
8. Eshed Y., Abu-Abied M., Saranga Y., and Zamir D. Lycopersicon esculentum lines containing small overlapping introgressions from L. pennellii. Theor. Appl. Genet. 83 (1992) 1027-1034
9. Finkelstein R.R., and Gibson S.I. ABA and sugar interactions regulating development: cross-talk or voices in a crowd?. Curr. Opin. Plant Biol. 5 (2002) 26-32
10. Frankel N., Hasson E., Iusem N.D., and Rossi M.S. Adaptive evolution of water-stress induced gene Asr2 in Lycopersicon species dwelling in arid habitats. Mol. Biol. Evol. 20 (2003) 1955-1962
11. Goes da Silva F., et al. Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple vitis species and development of a compendium of gene expression during berry development. Plant Physiol. 139 (2005) 574-597
12. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
13. Hughes A.L., and Friedman R. Expression patterns of duplicate genes in the developing root in Arabidopsis thaliana. J. Mol. Evol. 60 (2005) 247-256
14. Kalifa Y., Gilad A., Konrad Z., Zaccai M., Scolnik P.A., and Bar-Zvi D. The water- and salt-stress-regulated Asr1 (abscisic acid stress ripening) gene encodes a zinc-dependent DNA-binding protein. Biochem. J. 381 (2004) 373-378
15. Kimura M. The Neutral Theory of Molecular Evolution (1983), Cambridge University Press, Cambridge
16. Kong H., Leebens-Mack J., Ni W., dePamphilis C.W., and Ma H. Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications. Mol. Biol. Evol. 21 (2004) 117-128
17. Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: Molecular Evolutionary Genetics Analysis Software (2001), Arizona State University, Tempe, Arizona
18. Maskin L., et al. Differential expression of the members of the Asr gene family in tomato (Lycopersicon esculentum). Plant Sci. 161 (2001) 739-746
19. Nei M., and Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3 (1986) 418-426
20. Nei M., and Rooney A.P. Concerted and Birth-and-Death Evolution of Multigene Families. Annu. Rev. Genet. 39 (2005) 121-152
21. Ohta T. Slightly deleterious substitutions in evolution. Nature 246 (1973) 96-98
22. Ohta T. Role of gene duplication in evolution. Genome 31 (1989) 304-310
23. Quesada H., Ramos-Onsins S.E., and Aguade M. Birth-and-death evolution of the Cecropin multigene family in Drosophila. J. Mol. Evol. 60 (2005) 1-11
24. Rossi M.M., and Iusem N.D. Tomato genomic clone homologous to a gene encoding an ABA-induced protein. Plant Physiol. 104 (1994) 1073-1074
25. Rossi M.M., Lijavetzky D., Bernacchi D., Hopp H.E., and Iusem N.D. Asr genes belong to a tomato gene family of at least three closely linked loci located to chromosome 4. Mol. Gen. Genet. 252 (1996) 489-492
26. Sawyer S.A. Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6 (1989) 526-538
27. Treger J.M., and McEntee K. Structure of the DNA damage-inducible gene DDR48 and evidence for its role in mutagenesis in Saccharomyces cerevisiae. Mol. Cell. Biol. 10 (1990) 3174-3184
28. Wang H.J., Hsu C.M., Guang Y.J., and Wang C.S. A lily pollen ASR protein localizes to both cytoplasm and nuclei requiring a nuclear localization signal. Physiol. Plant. 123 (2005) 314-320
29. Xia X., and Xie Z. DAMBE: data analysis in molecular biology and evolution. J. Heredity 92 (2001) 371-373
30. Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
31. Yang Z. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15 (1998) 568-573
32. Yang C.Y., Chen Y.C., Jauh G.Y., and Wang C.S. A Lily ASR Protein Involves Abscisic Acid Signaling and Confers Drought and Salt Resistance in Arabidopsis. Plant Physiol. 139 (2005) 836-846