-
1
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
DOI 10.1093/nar/gkg274
-
Roberts, R.J., Belfort, M., Bestor, T., Bhagwat, A.S., Bickle, T.A., Bitinaite, J., Blumenthal, R.M., Degtyarev, S., Dryden, D.T., Dybvig, K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812. (Pubitemid 36437486)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.7
, pp. 1805-1812
-
-
Roberts, J.R.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.Kh.8
Dryden, D.T.F.9
Dybvig, K.10
Firman, K.11
Gromova, E.S.12
Gumport, R.I.13
Halford, S.E.14
Hattman, S.15
Heitman, J.16
Hornby, D.P.17
Janulaitis, A.18
Jeltsch, A.19
Josephsen, J.20
Kiss, A.21
Klaenhammer, T.R.22
Kobayashi, I.23
Kong, H.24
Kruger, D.H.25
Lacks, S.26
Marinus, M.G.27
Miyahara, M.28
Morgan, R.D.29
Murray, N.E.30
Nagaraja, V.31
Piekarowicz, A.32
Pingoud, A.33
Raleigh, E.34
Rao, D.N.35
Reich, N.36
Repin, V.E.37
Selker, E.U.38
Shaw, P.-C.39
Stein, D.C.40
Stoddard, B.L.41
Szybalski, W.42
Trautner, T.A.43
Van Etten, J.L.44
Vitor, J.M.B.45
Wilson, G.G.46
Xu, S.-Y.47
more..
-
2
-
-
0016008908
-
DNA modification and restriction (Review)
-
Arber, W. (1974) DNA modification and restriction (Review). Prog. Nucleic Acid Res. Mol. Biol., 14, 1-37.
-
(1974)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.14
, pp. 1-37
-
-
Arber, W.1
-
3
-
-
0026338873
-
Restriction and modification systems
-
Wilson, G.G. and Murray, N.E. (1991) Restriction and modification systems. Ann. Rev. Genet., 25, 585-627. (Pubitemid 21903734)
-
(1991)
Annual Review of Genetics
, vol.25
, Issue.1
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
4
-
-
75549086595
-
REBASE - A database for DNA restriction and modification: Enzymes, genes and genomes
-
Roberts, R.J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
MacElis, D.4
-
5
-
-
0029045067
-
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
-
Meisel, A., Mackeldanz, P., Bickle, T.A., Kruger, D.H. and Schroeder, C. (1995) Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis. EMBO J., 14, 2958-2966.
-
(1995)
EMBO J.
, vol.14
, pp. 2958-2966
-
-
Meisel, A.1
MacKeldanz, P.2
Bickle, T.A.3
Kruger, D.H.4
Schroeder, C.5
-
6
-
-
0024278335
-
Type III DNA restriction and modification systems EcoP1 and EcoP15 Nucleotide sequence of the EcoP1 operon the EcoP15 mod gene and some EcoP1 mod mutants
-
Humbelin, M., Suri, B., Rao, D.N., Hornby, D.P., Eberle, H., Pripfl, T., Kenel, S. and Bickle, T.A. (1988) Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants. J. Mol. Biol., 200, 23-29.
-
(1988)
J. Mol. Biol.
, vol.200
, pp. 23-29
-
-
Humbelin, M.1
Suri, B.2
Rao, D.N.3
Hornby, D.P.4
Eberle, H.5
Pripfl, T.6
Kenel, S.7
Bickle, T.A.8
-
7
-
-
77952727817
-
Maintaining a sense of direction during long-range communication on DNA
-
Szczelkun, M.D., Friedhoff, P. and Seidel, R. (2010) Maintaining a sense of direction during long-range communication on DNA. Biochem. Soc. Trans., 38, 404-409.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 404-409
-
-
Szczelkun, M.D.1
Friedhoff, P.2
Seidel, R.3
-
8
-
-
0023715961
-
Proteins encoded by the DpnI restriction gene cassette
-
de la Campa, A.G., Springhorn, S.S., Kale, P. and Lacks, S.A. (1988) Proteins encoded by the DpnI restriction gene cassette. J. Biol. Chem., 263, 14696-14702.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 14696-14702
-
-
De La Campa, A.G.1
Springhorn, S.S.2
Kale, P.3
Lacks, S.A.4
-
9
-
-
39849085506
-
Substrate specificity of new methyl-directed DNA endonuclease GlaI
-
Tarasova, G.V., Nayakshina, T.N. and Degtyarev, S.K. (2008) Substrate specificity of new methyl-directed DNA endonuclease GlaI. BMC Mol. Biol., 9, 7.
-
(2008)
BMC Mol. Biol.
, vol.9
, pp. 7
-
-
Tarasova, G.V.1
Nayakshina, T.N.2
Degtyarev, S.K.3
-
10
-
-
77956500617
-
A unique family of Mrr-like modification-dependent restriction endonucleases
-
Zheng, Y., Cohen-Karni, D., Xu, D., Chin, H.G., Wilson, G., Pradhan, S. and Roberts, R.J. (2010) A unique family of Mrr-like modification-dependent restriction endonucleases. Nucleic Acids Res., 38, 5527-5534.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5527-5534
-
-
Zheng, Y.1
Cohen-Karni, D.2
Xu, D.3
Chin, H.G.4
Wilson, G.5
Pradhan, S.6
Roberts, R.J.7
-
11
-
-
0026634757
-
McrBC: A multisubunit GTP-dependent restriction endonuclease
-
Sutherland, E., Coe, L. and Raleigh, E.A. (1992) McrBC: a multisubunit GTP-dependent restriction endonuclease. J. Mol. Biol., 225, 327-358.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 327-358
-
-
Sutherland, E.1
Coe, L.2
Raleigh, E.A.3
-
12
-
-
0024296268
-
McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning
-
Raleigh, E.A., Murray, N.E., Revel, H., Blumenthal, R.M., Westaway, D., Reith, A.D., Rigby, P.W.J., Elhai, J. and Hanahan, D. (1988) McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning. Nucleic Acids Res., 15, 1563-1575.
-
(1988)
Nucleic Acids Res.
, vol.15
, pp. 1563-1575
-
-
Raleigh, E.A.1
Murray, N.E.2
Revel, H.3
Blumenthal, R.M.4
Westaway, D.5
Reith, A.D.6
Rigby, P.W.J.7
Elhai, J.8
Hanahan, D.9
-
13
-
-
77951229049
-
Differential binding of Escherichia coli McrA protein to DNA sequences that contain the dinucleotide m5CpG
-
Mulligan, E.A., Hatchwell, E., McCorkle, S.R. and Dunn, J.J. Differential binding of Escherichia coli McrA protein to DNA sequences that contain the dinucleotide m5CpG. Nucleic Acids Res., 38, 1997-2005.
-
Nucleic Acids Res.
, vol.38
, pp. 1997-2005
-
-
Mulligan, E.A.1
Hatchwell, E.2
McCorkle, S.R.3
Dunn, J.J.4
-
14
-
-
52949085449
-
Cloning, purification and initial characterization of E. coli McrA, a putative 5-methylcytosine-specific nuclease
-
Mulligan, E.A. and Dunn, J.J. (2008) Cloning, purification and initial characterization of E. coli McrA, a putative 5-methylcytosine-specific nuclease. Protein Expr. Purif., 62, 98-103.
-
(2008)
Protein Expr. Purif.
, vol.62
, pp. 98-103
-
-
Mulligan, E.A.1
Dunn, J.J.2
-
15
-
-
33846591325
-
A Type IV Modification Dependent Restriction Nuclease that Targets Glucosylated Hydroxymethyl Cytosine Modified DNAs
-
DOI 10.1016/j.jmb.2006.11.051, PII S0022283606015919
-
Bair, C.L. and Black, L.W. (2007) A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs. J. Mol. Biol., 366, 768-778. (Pubitemid 46175865)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.3
, pp. 768-778
-
-
Bair, C.L.1
Black, L.W.2
-
16
-
-
79956286510
-
Methicillin and vancomycin resistant S. aureus in hospitalized patients
-
Loomba, P.S., Taneja, J. and Mishra, B. (2010) Methicillin and vancomycin resistant S. aureus in hospitalized patients. J. Glob. Infect. Dis., 2, 275-283.
-
(2010)
J. Glob. Infect. Dis.
, vol.2
, pp. 275-283
-
-
Loomba, P.S.1
Taneja, J.2
Mishra, B.3
-
17
-
-
77951620048
-
Community-associated meticillin-resistant Staphylococcus aureus
-
Deleo, F.R., Otto, M., Kreiswirth, B.N. and Chambers, H.F. (2010) Community-associated meticillin-resistant Staphylococcus aureus. Lancet, 375, 1557-1568.
-
(2010)
Lancet
, vol.375
, pp. 1557-1568
-
-
Deleo, F.R.1
Otto, M.2
Kreiswirth, B.N.3
Chambers, H.F.4
-
18
-
-
78149361140
-
Methicillin-resistant Staphylococcus aureus: Related infections and antibiotic resistance
-
Stefani, S. and Goglio, A. (2010) Methicillin-resistant Staphylococcus aureus: related infections and antibiotic resistance. Int. J. Infect. Dis., (Suppl. 4), S19-S22.
-
(2010)
Int. J. Infect. Dis.
, Issue.SUPPL. 4
-
-
Stefani, S.1
Goglio, A.2
-
19
-
-
38649083439
-
Vancomycin-resistant Staphylococcus aureus isolates associated with Inc18-like vanA plasmids in Michigan
-
DOI 10.1128/AAC.00908-07
-
Zhu, W., Clark, N.C., McDougal, L.K., Hageman, J., McDonald, L.C. and Patel, J.B. (2008) Vancomycin-resistant Staphylococcus aureus isolates associated with Inc18-like vanA plasmids in Michigan. Antimicrob. Agents Chemother., 52, 452-457. (Pubitemid 351170813)
-
(2008)
Antimicrobial Agents and Chemotherapy
, vol.52
, Issue.2
, pp. 452-457
-
-
Zhu, W.1
Clark, N.C.2
McDougal, L.K.3
Hageman, J.4
McDonald, L.C.5
Patel, J.B.6
-
20
-
-
33846001377
-
High-level vancomycin-resistant Staphylococcus aureus isolates associated with a polymicrobial biofilm
-
DOI 10.1128/AAC.00576-06
-
Weigel, L.M., Donlan, R.M., Shin, D.H., Jensen, B., Clark, N.C., McDougal, L.K., Zhu, W., Musser, K.A., Thompson, J., Kohlerschmidt, D. et al. (2007) High-level vancomycin-resistant Staphylococcus aureus isolates associated with a polymicrobial biofilm. Antimicrob Agents Chemother., 51, 231-238. (Pubitemid 46047711)
-
(2007)
Antimicrobial Agents and Chemotherapy
, vol.51
, Issue.1
, pp. 231-238
-
-
Weigel, L.M.1
Donlan, R.M.2
Shin, D.H.3
Jensen, B.4
Clark, N.C.5
McDougal, L.K.6
Zhu, W.7
Musser, K.A.8
Thompson, J.9
Kohlerschmidt, D.10
Dumas, N.11
Limberger, R.J.12
Patel, J.B.13
-
21
-
-
0344827209
-
Genetic Analysis of a High-Level Vancomycin-Resistant Isolate of Staphylococcus aureus
-
DOI 10.1126/science.1090956
-
Weigel, L.M., Clewell, D.B., Gill, S.R., Clark, N.C., McDougal, L.K., Flannagan, S.E., Kolonay, J.F., Shetty, J., Killgore, G.E. and Tenover, F.C. (2003) Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus. Science, 302, 1569-1571. (Pubitemid 37475701)
-
(2003)
Science
, vol.302
, Issue.5650
, pp. 1569-1571
-
-
Weigel, L.M.1
Clewell, D.B.2
Gill, S.R.3
Clark, N.C.4
McDougal, L.K.5
Flannagan, S.E.6
Kolonay, J.F.7
Shetty, J.8
Killgore, G.E.9
Tenover, F.C.10
-
22
-
-
1942472949
-
Resistance integrons and super-integrons
-
DOI 10.1111/j.1198-743X.2004.00858.x
-
Fluit, A.C. and Schmitz, F.J. (2004) Resistance integrons and super-integrons. Clin. Microbiol. Infect., 10, 272-288. (Pubitemid 38519353)
-
(2004)
Clinical Microbiology and Infection
, vol.10
, Issue.4
, pp. 272-288
-
-
Fluit, A.C.1
Schmitz, F.-J.2
-
23
-
-
33746631363
-
Sau1: A novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages
-
DOI 10.1128/JB.00418-06
-
Waldron, D.E. and Lindsay, J.A. (2006) Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages. J. Bacteriol., 188, 5578-5585. (Pubitemid 44157315)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.15
, pp. 5578-5585
-
-
Waldron, D.E.1
Lindsay, J.A.2
-
24
-
-
77955350733
-
A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains
-
Corvaglia, A.R., Francois, P., Hernandez, D., Perron, K., Linder, P. and Schrenzel, J. (2010) A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains. Proc. Natl Acad. Sci. USA, 107, 11954-11958.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 11954-11958
-
-
Corvaglia, A.R.1
Francois, P.2
Hernandez, D.3
Perron, K.4
Linder, P.5
Schrenzel, J.6
-
25
-
-
63449102824
-
Activation of mRNA translation by phage protein and low temperature: The case of Lactococcus lactis abortive infection system AbiD1
-
Bidnenko, E., Chopin, A., Ehrlich, S.D. and Chopin, M.C. (2009) Activation of mRNA translation by phage protein and low temperature: the case of Lactococcus lactis abortive infection system AbiD1. BMC Mol. Biol., 10, 4.
-
(2009)
BMC Mol. Biol.
, vol.10
, pp. 4
-
-
Bidnenko, E.1
Chopin, A.2
Ehrlich, S.D.3
Chopin, M.C.4
-
26
-
-
58849150431
-
The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair
-
Fineran, P.C., Blower, T.R., Foulds, I.J., Humphreys, D.P., Lilley, K.S. and Salmond, G.P. (2009) The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Proc. Natl Acad. Sci. USA, 106, 894-899.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 894-899
-
-
Fineran, P.C.1
Blower, T.R.2
Foulds, I.J.3
Humphreys, D.P.4
Lilley, K.S.5
Salmond, G.P.6
-
27
-
-
78650694154
-
Cleavage of phosphorothioated DNA and methylated DNA by the type IV restriction endonuclease ScoMcrA
-
Liu, G., Ou, H.Y., Wang, T., Li, L., Tan, H., Zhou, X., Rajakumar, K., Deng, Z. and He, X. (2010) Cleavage of phosphorothioated DNA and methylated DNA by the type IV restriction endonuclease ScoMcrA. PLoS Genet., 6, e1001253.
-
(2010)
PLoS Genet.
, vol.6
-
-
Liu, G.1
Ou, H.Y.2
Wang, T.3
Li, L.4
Tan, H.5
Zhou, X.6
Rajakumar, K.7
Deng, Z.8
He, X.9
-
28
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
29
-
-
0015147278
-
The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli
-
Lowry, O.H., Carter, J., Ward, J.B. and Glaser, L. (1971) The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli. J. Biol. Chem., 246, 6511-6521.
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 6511-6521
-
-
Lowry, O.H.1
Carter, J.2
Ward, J.B.3
Glaser, L.4
-
30
-
-
0029921149
-
A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: Identification of duplicated repeats and potential active site residues
-
Ponting, C.P. and Kerr, I.D. (1996) A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues. Protein Sci., 5, 914-922. (Pubitemid 26139179)
-
(1996)
Protein Science
, vol.5
, Issue.5
, pp. 914-922
-
-
Ponting, C.P.1
Kerr, I.D.2
-
31
-
-
38349121904
-
Expression and purification of BmrI restriction endonuclease and its N-terminal cleavage domain variants
-
Bao, Y., Higgins, L., Zhang, P., Chan, S.H., Laget, S., Sweeney, S., Lunnen, K. and Xu, S.Y. (2008) Expression and purification of BmrI restriction endonuclease and its N-terminal cleavage domain variants. Protein Expr. Purif., 58, 42-52.
-
(2008)
Protein Expr. Purif.
, vol.58
, pp. 42-52
-
-
Bao, Y.1
Higgins, L.2
Zhang, P.3
Chan, S.H.4
Laget, S.5
Sweeney, S.6
Lunnen, K.7
Xu, S.Y.8
-
32
-
-
0037470599
-
The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre
-
DOI 10.1016/S0022-2836(03)00020-2
-
Lagunavicius, A., Sasnauskas, G., Halford, S.E. and Siksnys, V. (2003) The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre. J. Mol. Biol., 326, 1051-1064. (Pubitemid 36263382)
-
(2003)
Journal of Molecular Biology
, vol.326
, Issue.4
, pp. 1051-1064
-
-
Lagunavicius, A.1
Sasnauskas, G.2
Halford, S.E.3
Siksnys, V.4
-
33
-
-
78650694154
-
Cleavage of phosphorothioated DNA and methylated DNA by the type IV restriction endonuclease ScoMcrA
-
Liu, G., Ou, H.-Y., Wang, T., Li, L., Tan, H., Zhou, X., Rajakumar, K., Deng, Z. and He, X. (2010) Cleavage of phosphorothioated DNA and methylated DNA by the type IV restriction endonuclease ScoMcrA. PLoS Genetics, 6, e1001253.
-
(2010)
PLoS Genetics
, vol.6
-
-
Liu, G.1
Ou, H.-Y.2
Wang, T.3
Li, L.4
Tan, H.5
Zhou, X.6
Rajakumar, K.7
Deng, Z.8
He, X.9
-
34
-
-
77949345175
-
Cofactor requirement of HpyAV restriction endonuclease
-
Chan, S.H., Opitz, L., Higgins, L., O'Loane, D. and Xu, S.Y. (2010) Cofactor requirement of HpyAV restriction endonuclease. PLoS ONE, 5, e9071.
-
(2010)
PLoS ONE
, vol.5
-
-
Chan, S.H.1
Opitz, L.2
Higgins, L.3
O'Loane, D.4
Xu, S.Y.5
-
35
-
-
0026602370
-
Organization and function of the mcrBC genes of Escherichia coli K-12
-
Raleigh, E.A. (1992) Organization and function of the mcrBC genes of Escherichia coli K-12. Mol. Microbiol., 6, 1079-1086.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 1079-1086
-
-
Raleigh, E.A.1
-
36
-
-
75549088687
-
Database resources of the National Center for Biotechnology Information
-
Sayers, E.W., Barrett, T., Benson, D.A., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Edgar, R., Federhen, S. et al. (2009) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 37, D5-D15.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
Dicuccio, M.8
Edgar, R.9
Federhen, S.10
|