Activation of mRNA translation by phage protein and low temperature: The case of Lactococcus lactis abortive infection system AbiD1

BMC Molecular Biology

Volumn 10, Issue , 2009, Pages

  Bidnenko, Elena ^a   Chopin, Alain ^a   Ehrlich, S Dusko ^a   Chopin, Marie Christine ^a  

^a CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; BACTERIOPHAGE PROTEIN; MESSENGER RNA; PROTEIN ABID1; PROTEIN OSMC; UNCLASSIFIED DRUG; VIRUS PROTEIN; ABID PROTEIN, LACTOCOCCUS LACTIS; HYBRID PROTEIN;

ABORTIVE INFECTION; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; CONTROLLED STUDY; GENE EXPRESSION; LACTOCOCCUS LACTIS; LOW TEMPERATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PHENOTYPE; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN SYNTHESIS; RNA TRANSLATION; TRANSLATION INITIATION; BACTERIOPHAGE; BIOSYNTHESIS; COLD; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; VIROLOGY;

ESCHERICHIA COLI; LACTOCOCCUS LACTIS;

BACTERIAL PROTEINS; BACTERIOPHAGES; COLD TEMPERATURE; GENE EXPRESSION REGULATION, BACTERIAL; LACTOCOCCUS LACTIS; PHENOTYPE; PROTEIN BIOSYNTHESIS; RECOMBINANT FUSION PROTEINS; RNA, MESSENGER; VIRAL PROTEINS;

EID: 63449102824     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-10-4     Document Type: Article

References (74)

1. Smith HS Pizer LI Pylkas L Lederberg S Abortive infection of Shigella dysenteriae P2 by T2 bacteriophage J Virol 1969, 4:162-168. 375851 4896823
2. Rettenmier CW Hemphill E Abortive infection of lysogenic Bacillus subtilis 168 (SP02) by bacteriophage Φ1 J Virol 1974, 13:870-880. 355385 4206942
3. Behnke D Malke H Bacteriophage interference in Streptococcus pyogenes. I. Characterization of prophage-host systems interfering with the virulent phage A25 Virology 1978, 85:118-128. 10.1016/ 0042-6822(78)90416-6 347693
4. Biswas S Chowdhury R Das J A 14-Kilodalton inner membrane protein of Vibrio cholerae biotype E1 Tor confers resistance to group IV choleraphage infection to classical vibrios J Bacteriol 1992, 174:6221-6229. 207691 1400172
5. Tran L-SP Szabo L Ponyi T Orosz L Sik T Holczinger A Phage abortive infection of Bacillus licheniformis ATCC 9800; identification of the abiBL11 gene and localisation and sequencing of its promoter Appl Microbiol Biotechnol 1999, 52:845-852. 10.1007/s002530051602 10616719
6. Molineux IJ Host-parasite interactions: Recent developments in the genetics of abortive phage infections New Biol 1991, 3:230-236. 1831658
7. Snyder L Phage-exclusion enzymes: A bonanza of biochemical and cell biology reagents? Mol Microbiol 1995, 15:415-423. 10.1111/ j.1365-2958.1995.tb02255.x 7540246
8. Coffey A RP Ross Bacteriophage - resistance systems in dairy starter strains: Molecular analysis to application Antonie Van Leeuwenhoek 2002, 82:303-321. 10.1023/A:1020639717181 12369198
9. Daly C Fitzgerald GF Davis R Biotechnology of lactic acid bacteria with special reference to bacteriophage resistance Antonie Van Leeuwenhoek 1996, 70:99-110. 10.1007/BF00395928 8879402
10. Snyder L Kaufmann G Molecular biology of bacteriophage T4 ASM, Washington, DC Karam JD 1994, 391-396.
11. Schmitt CK Kemp P Molineux IJ Genes 1.2 and 10 of bacteriophages T3 and T7 determine the permeability lesions observed in infected cells of Escherichia coli expressing the F plasmid gene pifA J Bacteriol 1991, 173:6507-6514. 208987 1917875
12. Cheng X Wang WF Molineux IJ F exclusion of bacteriophage T7 occurs at the cell membrane Virology 2004, 326:340-352. 10.1016/ j.virol.2004.06.001 15302217
13. Parma DH Snyder M Sobolevski S Nawroz M Brody E Gold L The Rex system of bacteriophage λ: Tolerance and altruistic cell death Genes Dev 1992, 6:497-510. 10.1101/gad.6.3.497 1372278
14. Kaufmann G David M Borasio GD Teichmann A Paz A Green R Snyder L Phage and host genetic determinants of the specific anticodon-loop cleavages in bacteriophage T4 infected Escherichia coli CTr5X J Mol Biol 1986, 188:15-22. 10.1016/0022-2836(86)90476-6 3519981
15. Penner M Morad I Snyder L Kaufmann G Phage T4-coded Stp: Double-edged effector of coupled DNA and tRNA-restriction systems J Mol Biol 1995, 249:857-868. 10.1006/jmbi.1995.0343 7791212
16. Amitsur M Benjamin S Rosne R Chapman-Shimshoni D Meidler R Blanga S Kaufmann G Bacteriophage T4-encoded Stp can be replaced as activator of anticodon nuclease by a normal host cell metabolite Mol Microbiol 2003, 50:129-143. 10.1046/j.1365-2958.2003.03691.x 14507369
17. Copeland NA Kleanthous C The role of an activating peptide in protease-mediated suicide of Escherichia coli-K12 J Biol Chem 2004, 280:112-117. 15501819
18. Engelberg-Kulka H Reches M Narasimhan S Schoulaker-Schwarz R Klemes Y Aizenman E Glazer G rexB of bacteriophage λ is an anti-cell death gene Proc Natl Acad Sci USA 1998, 95:15481-15486. 28068 9860994 10.1073/ pnas.95.26.15481
19. Slavcev RA Hayes S Stationary phase-like properties of the bacteriophage λ Rex exclusion phenotype Mol Gen Genomics 2003, 269:40-48.
20. Chopin M-C Chopin A Bidnenko E Phage abortive infection in lactococci: variations on a theme Curr Opinion Microbiol 2005, 8:473-479. 15979388 10.1016/j.mib.2005.06.006
21. Yang JM DeUrraza PJ Matvienko N O'Sillivan DJ Involvement of the LlaKR2I methylase in expression of the AbiR bacteriophage defense system in Lactococcus lactis subsp. lactis biovar diacetylactis J Bacteriol 2006, 188:1920-1928. 1426540 16484203 10.1128/JB.188.5.1920-1928.2006
22. Durmaz E Klaenhammer TR Abortive phage resistance mechanism AbiZ speeds the lysis clock to cause premature lysis of phage-infected Lactococcus lactis J Bacteriol 2007, 189:1417-1425. 1797342 17012400 10.1128/ JB.00904-06
23. Hill C Miller LA Klaenhammer TR Nucleotide sequence and distribution of the pTR2030 resistance determinant (hsp) which aborts bacteriophage infection in lactococci Appl Environ Microbiol 1990, 56:2255-2258. 184594 2389939
24. Anba J Bidnenko E Hiller A Ehrlich SD Chopin M-C Characterization of the lactococcal abiD1 gene coding for phage abortive infection J Bacteriol 1995, 177:3818-3823. 177101 7601848
25. O'Connor L Tangney M Fitzgerald GF Expression, regulation and mode of action of the AbiG abortive infection system of Lactococcus lactis subsp. cremoris UC653 Appl Environ Microbiol 1999, 65:330-335. 91026 9872803
26. Domingues S Chopin A Ehrlich SD Chopin M-C The lactococcal abortive phage infection system AbiP prevents both phage DNA replication and temporal transcription switch J Bacteriol 2004, 186:713-721. 321470 14729697 10.1128/JB.186.3.713-721.2004
27. Gautier M Chopin M-C Plasmid-determined systems for restriction and modification activity and abortive infection in Streptococcus cremoris Appl Environ Microbiol 1987, 53:923-927. 203787 16347351
28. Bidnenko E Ehrlich SD Chopin M-C Anba J Lactococcus lactis AbiD1 abortive infection efficiency is drastically increased by a phage protein FEMS Microbiol Lett 2002, 214:283-287. 10.1111/ j.1574-6968.2002.tb11360.x 12351244
29. Bidnenko E Ehrlich SD Chopin M-C Phage operon involved in sensitivity to the Lactococcus lactis abortive infection mechanism AbiD1 J Bacteriol 1995, 177:3824-3829. 177102 7601849
30. Bidnenko E Ehrlich SD Chopin M-C Lactococcus lactis phage operon coding for an endonuclease homologous to RuvC Mol Microbiol 1998, 28:823-834. 10.1046/j.1365-2958.1998.00845.x 9643549
31. Charples GJ The X philes: Structure-specific endonucleases that resolve Holliday junctions Mol Microbiol 2001, 39:823-834. 10.1046/ j.1365-2958.2001.02284.x 11251805
32. Curtis F Reed P Sharples GJ Evolution of a phage RuvC endonuclease for resolution of both Holliday and branched DNA junctions Mol Microbiol 2004, 55:1332-1345. 15720544 10.1111/j.1365-2958.2004.04476.x
33. Sambrook J Fritsch EF Maniatis T Molecular cloning: A Laboratory Manual Cold Spring Harbor Laboratory Press, Cold Spring Harbor NY 2, 1989.
34. Holo H Nes IF High-frequency transformation, by electroporation, of Lactococcus lactis subsp. cremoris grown with glycine in osmotically stabilized media Appl Environ Microbiol 1989, 55:3119-3123. 203233 16348073
35. Gibson UE Heid CA Williams PM A novel method for real time quantitative RT-PCR Genome Res 1996, 6:995-1001. 10.1101/gr.6.10.995 8908519
36. Heid CA Stevens J Livak KJ Williams PM Real time quantitative PCR Genome Res 1996, 6:986-994. 10.1101/gr.6.10.986 8908518
37. Renault P Corthier G Goupil N Delorme C Ehrlich SD Plasmid vectors for Gram-positive bacteria switching from high to low copy number Gene 1996, 183:175-182. 10.1016/S0378-1119(96)00554-9 8996104
38. Bhavsar AP Zhao X Brown ED Development and characterization of a xylose-dependent system for expression of cloned genes in Bacillus subtilis: Conditional complementation of a teichoic acid mutant Appl Environ Microbiol 2001, 67:403-410. 92592 11133472 10.1128/ AEM.67.1.403-410.2001
39. Vossen Van der JMBM Lelie D Venema G Isolation and characterization of Streptococcus cremoris Wg2-specific promoters Appl Environ Microbiol 1987, 53:2452-2457. 204128 2447829
40. Rallu F Gruss A Maguin E Lactococcus lactis and stress Antonie Van Leeuwenhoek 1996, 70:243-251. 10.1007/BF00395935 8879409
41. Rallu F Gruss A Ehrlich SD Maguin E Acid- and multistress-resistant mutants of Lactococcus lactis: Identification of intracellular stress signals Mol Microbiol 2000, 35:517-528. 10.1046/j.1365-2958.2000.01711.x 10672175
42. Lopez PJ Marchand I Yarchik O Dreyfus M Translation inhibitors stabilize Escherichia coli mRNAs independently of ribosome protection Proc Natl Sci USA 1998, 95:6067-6072. 9600918 10.1073/pnas.95.11.6067 27586
43. Chandry PS Davidson BE Hiller AJ Temporal transcription map of the Lactococcus lactis bacteriophage sk1 Microbiology 1994, 140(Pt 9):2251-2261. 7952177
44. Chiaruttini C Milet M Gene organization, primary structure and RNA processing analysis of a ribosomal RNA operon in Lactococcus lactis J Mol Biol 1993, 230:57-76. 10.1006/jmbi.1993.1126 8450551
45. Zuker M Mfold web server for nucleic acid folding and hybridization prediction Nucl Acids Res 2003, 31:3406-3415. 169194 12824337 10.1093/ nar/gkg595
46. Zhang J Deutscher MP A uridine-rich sequence required for translation of prokaryotic mRNA Proc Natl Acad Sci USA 1992, 89:2605-2609. 48710 1372983 10.1073/pnas.89.7.2605
47. Hofacker IL Vienna RNA secondary structure server Nucleic Acids Res 2003, 31:3429-3431. 169005 12824340 10.1093/nar/gkg599
48. Evers D Giegerich R RNA Movies: Visualizing RNA secondary structure spaces Bioinformatics 1999, 15:32-37. 10.1093/bioinformatics/15.1.32 10068690
49. De Rijk P De Wachter R RnaViz, a program for the visualisation of RNA secondary structure Nucleic Acids Res 1997, 25:4679-4684. 147081 9358182 10.1093/nar/25.22.4679
50. Eaton TJ Shearman CA Gasson MJ The use of bacterial luciferase genes as reporter genes in Lactococcus: Regulation of the Lactococcus lactis subsp.lactis lactose genes J Gen Microbiol 1993, 139:1495-1501. 8371112
51. Sorensen MA Fricke J Pedersen S Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo J Mol Biol 1998, 280:561-569. 10.1006/jmbi.1998.1909 9677288
52. Goupil-Feuillerat N Corthier G Godon JJ Ehrlich SD Renault P Transcriptional and translational regulation of a-acetolactate decarboxylase of Lactococcus lactis subsp. lactis J Bacteriol 2000, 182:5399-5408. 110982 10986242 10.1128/JB.182.19.5399-5408.2000
53. Ganoza MC Kiel M Aoki H Evolutionary conservation of reactions in translation Microbiol Mol Biol Rev 2002, 66:460-485. 120792 12209000 10.1128/MMBR.66.3.460-485.2002
54. Escher A O'Kane DJ Lee J Szalay AA Bacterial luciferase αβ fusion protein is fully active as a monomer and highly sensitive in vivo to elevated temperature Proc Natl Acad Sci USA 1989, 86:6528-6532. 297877 2671993 10.1073/pnas.86.17.6528
55. O'Connell KP Gustafson AM Lehmann MD Thomashow MF Identification of cold shock gene loci in Sinorhizobium meliloti by using a luxAB reporter transposon Appl Environ Microbiol 2000, 66:401-405. 91836 10618254
56. Gustafson AM O'Connell K Thomashow MF Regulation of Sinorhizobium meliloti 1021 rrnA-reporter gene fusions in response to cold shock Can J Microbiol 2002, 48:821-830. 10.1139/w02-078 12455614
57. Bylund GO Wipemo LC Lundberg LA Wikstrom PM RimM and RbfA are essential for efficient processing of 16 S rRNA in Eschirichia coli J Bacteriol 1998, 180:73-82. 106851 9422595
58. Inouye M Alsina J Chen J Inouye M Suppression of defective ribosome assembly in a rbfA deletion mutant by overexpression of Era, an essential GTPase in Escherichia coli Mol Microbiol 2003, 48:1005-1016. 10.1046/j.1365-2958.2003.03475.x 12753192
59. Xia B Ke H Shinde U Inouye M The role of RbfA in 16 S rRNA processing and cell growth at low temperature in Escherichia coli J Mol Biol 2003, 332:575-584. 10.1016/S0022-2836(03)00953-7 12963368
60. Jones PG Inouye M RbfA, A 30S ribosomal binding factor, is a cold-shock protein whose absence triggers the cold-shock response Mol Microbiol 1996, 21:1207-1218. 10.1111/j.1365-2958.1996.tb02582.x 8898389
61. Dammel CS Noller HF Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA Genes Dev 1995, 9:626-637. 10.1101/gad.9.5.626 7535280
62. Bardowski J Ehrlich SD Chopin A Tryptophan biosynthesis genes in Lactococcus lactis subsp. lactis J Bacteriol 1992, 174:6563-6570. 207625 1400208
63. Havgaard JH Lyngsø RB Gorodkin J The FOLDALIGNE web server for pairwise structural RNA alignment and mutual motif search Nucleic Acids Res 2005, 33:650-653. 15980555 1160234 10.1093/nar/gki473
64. Havgaard JH Lyngsø RB Stormo GD Gorodkin J Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% Bioinformatics 2005, 21:1815-1824. 10.1093/bioinformatics/bti279 15657094
65. Skinner MM Trempy JE Expression of clpX, an ATPase subunit of the Clp protease, is heat and cold shock inducible in Lactococcus lactis J Dairy Sci 2000, 84(8):1783-1785. 11518300
66. Wouters JA Frenkiel H de Vos WM Kuipers OP Abee T Cold shock proteins of Lactococcus lactis MG1363 are involved in cryoprotection and in the production of cold-induced proteins Appl Enviroment Microbiol 2001, 67:5171-5178. 11679342 10.1128/AEM.67.11.5171-5178.2001 93287
67. Hattman S Newman L Murthy HMK Nagaraja V Com, the phage Mu mom translational activator, is a zing-binding protein that binds specifically to its cognate mRNA Proc Natl Acad Sci USA 1991, 88:10027-10031. 52860 1835088 10.1073/pnas.88.22.10027
68. Springer M Translational control of gene expression in E. coli and bacteriophage Regulation of gene expression in Escherichia coli Landes Com Lin ECC, Simon Lynch A 1996, 85-126.
69. Romby P Springer M Bacterial translational control at atomic resolution Trends Genet 2003, 3:155-61. 12615010 10.1016/S0168-9525(03)00020-9
70. Ermolenko DN Makhatadze GI Bacterial cold-shock proteins Cell Mol Life Sci 2002, 59:1902-1913. 10.1007/PL00012513 12530521
71. Giuliodori AM Brandi A Gualerzi CO Pon CL Preferential translation of cold-shock mRNA during cold adaptation RNA 2004, 10:265-276. 1370538 14730025 10.1261/rna.5164904
72. Thieringer HA Jones PG Inouye M Cold shock and adaptation BioEssays 1998, 20:49-57. 10.1002/ (SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N 9504047
73. Budde I Steil L Scharf C Völker U Bremer E Adaptation of Bacillussubtilis to growth at low temperature: A combined transcriptomic and proteomic appraisal Microbiology 2006, 152:831-853. 10.1099/ mic.0.28530-0 16514163
74. Hengge-Aronis R Signal transduction and regulatory mechanisms involved in control of the σS (RpoS) subunit of RNA polymerase Microbiol Mol Biol Rev 2002, 66:373-395. 120795 12208995 10.1128/ MMBR.66.3.373-395.2002