Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set

Plant Molecular Biology

Volumn 76, Issue 1-2, 2011, Pages 69-83

  ten Hove, Colette A ^a   Bochdanovits, Zoltán ^b   Jansweijer, Vera M A ^a   Koning, Fenne G ^a   Berke, Lidija ^a   Sanchez Perez, Gabino F ^a   Scheres, Ben ^a   Heidstra, Renze ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b VU UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

Arabidopsis; Development; Hormone; LRR RLK; Root; stress

Indexed keywords

ARABIDOPSIS PROTEIN; BACTERIAL DNA; INDOLEACETIC ACID; INDOLEACETIC ACID DERIVATIVE; LEUCINE RICH REPEAT PROTEINS; LEUCINE-RICH REPEAT PROTEINS; MANNITOL; PHYTOHORMONE; PROTEIN; PROTEIN KINASE; SODIUM CHLORIDE; T DNA; T-DNA;

ARABIDOPSIS; ARTICLE; CLASSIFICATION; CLUSTER ANALYSIS; DNA MICROARRAY; DRUG EFFECT; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; LIGHT; METABOLISM; MUTATION; PHYLOGENY; PLANT ROOT; RADIATION EXPOSURE; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLUSTER ANALYSIS; DNA, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; LIGHT; MANNITOL; MUTAGENESIS, INSERTIONAL; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT ROOTS; PROTEIN KINASES; PROTEINS; SIGNAL TRANSDUCTION; SODIUM CHLORIDE;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 79956072685     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-011-9769-x     Document Type: Article

References (59)

1. Aker J, de Vries SC (2008) Plasma membrane receptor complexes. Plant Physiol 147: 1560-1564.
2. Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Guilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
3. Badescu GO, Napier RM (2006) Receptors for auxin: will it all end in TIRs? Trends Plant Sci 11: 217-223.
4. Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN (2003) A gene expression map of the Arabidopsis root. Science 302: 1956-1960.
5. Bishopp A, Mahonen AP, Helariutta Y (2006) Signs of change: hormone receptors that regulate plant development. Development 133: 1857-1869.
6. Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 318: 801-806.
7. Ceserani T, Trofka A, Gandotra N, Nelson T (2009) VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Plant J 57: 1000-1014.
8. Chae L, Sudat S, Dudoit S, Zhu T, Luan S (2009) Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family. Mol Plant 2: 84-107.
9. de Lorenzo L, Merchan F, Laporte P, Thompson R, Clarke J, Sousa C, Crespi M (2009) A novel plant leucine-rich repeat receptor kinase regulates the response of Medicago truncatula roots to salt stress. Plant Cell 21: 668-680.
10. De Smet I, Vassileva V, De RB, Levesque MP, Grunewald W, van DD, van NG, Naudts M, van IG, De CR, Wang JY, Meuli N, Vanneste S, Friml J, Hilson P, Jurgens G, Ingram GC, Inze D, Benfey PN, Beeckman T (2008) Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. Science 322: 594-597.
11. Dello Ioio R, Linhares FS, Scacchi E, Casamitjana-Martinez E, Heidstra R, Costantino P, Sabatini S (2007) Cytokinins determine Arabidopsis root-meristem size by controlling cell differentiation. Curr Biol 17: 678-682.
12. Dello Ioio R, Linhares FS, Sabatini S (2008) Emerging role of cytokinin as a regulator of cellular differentiation. Curr Opin Plant Biol 11: 23-27.
13. Deyoung BJ, Bickle KL, Schrage KJ, Muskett P, Patel K, Clark SE (2006) The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis. Plant J 45: 1-16.
14. Dharmasiri N, Dharmasiri S, Weijers D, Lechner E, Yamada M, Hobbie L, Ehrismann JS, Jurgens G, Estelle M (2005) Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell 9: 109-119.
15. Dievart A, Clark SE (2003) Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases. Curr Opin Plant Biol 6: 507-516.
16. Dievart A, Clark SE (2004) LRR-containing receptors regulating plant development and defense. Development 131: 251-261.
17. Dievart A, Dalal M, Tax FE, Lacey AD, Huttly A, Li J, Clark SE (2003) CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ development. Plant Cell 15: 1198-1211.
18. Fujita H, Syono K (1997) PIS1, a negative regulator of the action of auxin transport inhibitors in Arabidopsis thaliana. Plant J 12: 583-595.
19. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
20. Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ (2000) Plant cellular and molecular responses to high salinity. Ann Rev Plant Physiol Plant Mol Biol 51: 463-499.
21. Ito Y, Nakanomyo I, Motose H, Iwamoto K, Sawa S, Dohmae N, Fukuda H (2006) Dodeca-CLE peptides as suppressors of plant stem cell differentiation. Science 313: 842-845.
22. Iyer-Pascuzzi A, Simpson J, Herrera-Estrella L, Benfey PN (2009) Functional genomics of root growth and development in Arabidopsis. Curr Opin Plant Biol 12: 165-171.
23. Johnson KL, Ingram GC (2005) Sending the right signals: regulating receptor kinase activity. Curr Opin Plant Biol 8: 648-656.
24. Kanamoto H, Hattan J, Takemura M, Yokota A, Kohchi T (2002) Molecular cloning and characterization of a gene coding for a putative receptor-like protein kinase with a Leucine-rich repeat expressed in inflorescence and root apices from Arabidopsis. Plant Biotech 19: 113-120.
25. Kinoshita A, Nakamura Y, Sasaki E, Kyozuka J, Fukuda H, Sawa S (2007) Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-related (CLE) peptides in Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol 48: 1821-1825.
26. Miwa H, Betsuyaku S, Iwamoto K, Kinoshita A, Fukuda H, Sawa S (2008) The receptor-like kinase SOL2 mediates CLE signaling in Arabidopsis. Plant Cell Physiol 49: 1752-1757.
27. Morillo SA, Tax FE (2006) Functional analysis of receptor-like kinases in monocots and dicots. Curr Opin in Plant Biol 9: 460-469.
28. Muller R, Bleckmann A, Simon R (2008) The receptor kinase CORYNE of Arabidopsis transmits the stem cell-limiting signal CLAVATA3 independently of CLAVATA1. Plant Cell 20: 934-946.
29. Nemhauser JL, Mockler TC, Chory J (2004) Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PLoS Biol 2: e258.
30. Ogawa M, Shinohara H, Sakagami Y, Matsubayashi Y (2008) Arabidopsis CLV3 peptide directly binds CLV1 ectodomain. Science 319: 294.
31. Penfield S, King J (2009) Towards a systems biology approach to understanding seed dormancy and germination. Proc R Soc B Biol Sci 276: 3561-3569.
32. Petrášek J, Friml J (2009) Auxin transport routes in plant development. Development 136: 2675-2688.
33. Rieu I, Laux T (2009) Signaling pathways maintaining stem cells at the plant shoot apex. Sem Cell Dev Biol 20: 1083-1088.
34. Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B (2003) An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol Biol 53: 247-259.
35. Sablowski R (2007) Flowering and determinacy in Arabidopsis. J Exp Bot 58: 899-907.
36. Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
37. Sarkar AK, Luijten M, Miyashima S, Lenhard M, Hashimoto T, Nakajima K, Scheres B, Heidstra R, Laux T (2007) Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature 446: 811-814.
38. Scheres B (2007) Stem-cell niches: nursery rhymes across kingdoms. Nat Rev Mol Cell Biol 8: 345-354.
39. Sessions A, Burke E, Presting G, Aux G, McElver J, Patton D, Dietrich B, Ho P, Bacwaden J, Ko C, Clarke JD, Cotton D, Bullis D, Snell J, Miguel T, Hutchison D, Kimmerly B, Mitzel T, Katagiri F, Glazebrook J, Law M, Goff SA (2002) A high-throughput Arabidopsis reverse genetics system. Plant Cell 14: 2985-2994.
40. Shiu SH, Bleecker AB (2001a) Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci USA 98: 10763-10768.
41. Shiu SH, Bleecker AB (2001b) Plant receptor-like kinase gene family: diversity, function, and signaling. Sci STKE 2001: RE22.
42. Shiu SH, Bleecker AB (2003) Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant Physiol 132: 530-543.
43. Shpak ED, Berthiaume CT, Hill EJ, Torii KU (2004a) Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation. Development 131: 1491-1501.
44. Shpak ED, Berthiaume CT, Hill EJ, Torii KU (2004b) Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation. Development 131: 1491-1501.
45. Stahl Y, Simon R (2009) Is the Arabidopsis root niche protected by sequestration of the CLE40 signal by its putative receptor ACR4? Plant Signal Behav 4: 634-635.
46. Stahl Y, Wink RH, Ingram GC, Simon R (2009) A signaling module controlling the stem cell niche in Arabidopsis root meristems. Curr Biol 19: 909-914.
47. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
48. Tarutani Y, Morimoto T, Sasaki A, Yasuda M, Nakashita H, Yoshida S, Yamaguchi I, Suzuki Y (2004) Molecular characterization of two highly homologous receptor-like kinase genes, RLK902 and RKL1, in Arabidopsis thaliana. Biosci Biotechnol Biochem 68: 1935-1941.
49. Ten Hove CA, Heidstra R (2008) Who begets whom? Plant cell fate determination by asymmetric cell division. Curr Opin Plant Biol 11: 34-41.
50. Tromas A, Braun N, Muller P, Khodus T, Paponov IA, Palme K, Ljung K, Lee JY, Benfey P, Murray JA, Scheres B, Perrot-Rechenmann C (2009) The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth. PLoS One 4: e6648.
51. van Zanten M, Snoek LB, Proveniers MCG, Peeters AJM (2009) The many functions of ERECTA. Trends Plant Sci 14: 214-218.
52. Vert Gg, Nemhauser JL, Geldner N, Hong F, Chory J (2005) Molecular mechanisms of steroid hormone signaling in plants. Annual Rev of Cell and Dev Biol 21: 177-201.
53. Wang H, Chevalier D, Larue C, Ki CS, Walker JC (2007) The protein phosphatases and protein kinases of Arabidopsis thaliana. In 'the Arabidopsis book'. The American Society of Plant Biologists, pp 1-38.
54. Whippo CW, Hangarter RP (2005) A brassinosteroid-hypersensitive mutant of BAK1 indicates that a convergence of photomorphogenic and hormonal signaling modulates phototropism. Plant Physiol 139: 448-457.
55. Whitford R, Fernandez A, De GR, Ortega E, Hilson P (2008) Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells. Proc Natl Acad Sci USA 105: 18625-18630.
56. Willemsen V, Wolkenfelt H, de Vrieze G, Weisbeek P, Scheres B (1998) The HOBBIT gene is required for formation of the root meristem in the Arabidopsis embryo. Development 125: 521-531.
57. Wolters H, Jurgens G (2009) Survival of the flexible: hormonal growth control and adaptation in plant development. Nat Rev Genet 10: 305-317.
58. Xiong L, Zhu JK (2001) Abiotic stress signal transduction in plants: molecular and genetic perspectives. Physiol Plant 112: 152-166.
59. Xiong L, Zhu J (2002) Salt tolerance. In 'The Arabidopsis Book'. The American Society of Plant Biologists, pp 1-22.