-
1
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu, W., Gius, D., Onyango, P., Muldoon-Jacobs, K., Karp, J., Feinberg, A.P. and Cui, H. (2008) Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature, 451, 202-206.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
Cui, H.7
-
2
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta, R.A., Shah, N., Wang, K.C., Kim, J., Horlings, H.M., Wong, D.J., Tsai, M.C., Hung, T., Argani, P., Rinn, J.L. et al. (2010) Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature, 464, 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
-
3
-
-
33344477914
-
U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis
-
DOI 10.1261/rna.2270406
-
Godfrey, A.C., Kupsco, J.M., Burch, B.D., Zimmerman, R.M., Dominski, Z., Marzluff, W.F. and Duronio, R.J. (2006) U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis. RNA, 12, 396-409. (Pubitemid 43290868)
-
(2006)
RNA
, vol.12
, Issue.3
, pp. 396-409
-
-
Godfrey, A.C.1
Kupsco, J.M.2
Burch, B.D.3
Zimmerman, R.M.4
Dominski, Z.5
Marzluff, W.F.6
Duronio, R.J.7
-
4
-
-
13144282733
-
Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome
-
DOI 10.1007/s00439-004-1219-2
-
Runte, M., Varon, R., Horn, D., Horsthemke, B. and Buiting, K. (2005) Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. Hum. Genet., 116, 228-230. (Pubitemid 40178734)
-
(2005)
Human Genetics
, vol.116
, Issue.3
, pp. 228-230
-
-
Runte, M.1
Varon, R.2
Horn, D.3
Horsthemke, B.4
Buiting, K.5
-
5
-
-
60349120914
-
Long non-coding RNAs: Insights into functions
-
Mercer, T.R., Dinger, M.E. and Mattick, J.S. (2009) Long non-coding RNAs: insights into functions. Nat. Rev. Genet., 10, 155-159.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 155-159
-
-
Mercer, T.R.1
Dinger, M.E.2
Mattick, J.S.3
-
6
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting, C.P., Oliver, P.L. and Reik, W. (2009) Evolution and functions of long noncoding RNAs. Cell, 136, 629-641.
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
7
-
-
0036500632
-
The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex
-
DOI 10.1093/emboj/21.5.1084
-
Meller, V.H. and Rattner, B.P. (2002) The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex. EMBO J., 21, 1084-1091. (Pubitemid 34206181)
-
(2002)
EMBO Journal
, vol.21
, Issue.5
, pp. 1084-1091
-
-
Meller, V.H.1
Rattner, B.P.2
-
8
-
-
1842715773
-
Path to equality strewn with roX
-
DOI 10.1016/j.ydbio.2004.01.039, PII S0012160604000909
-
Kelley, R.L. (2004) Path to equality strewn with roX. Dev. Biol., 269, 18-25. (Pubitemid 38471820)
-
(2004)
Developmental Biology
, vol.269
, Issue.1
, pp. 18-25
-
-
Kelley, R.L.1
-
9
-
-
0035891288
-
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
-
DOI 10.1038/35104581
-
Nguyen, V.T., Kiss, T., Michels, A.A. and Bensaude, O. (2001) 7SK small nuclear RNA binds to and inhibits the activity of CDK9/ cyclin T complexes. Nature, 414, 322-325. (Pubitemid 33097810)
-
(2001)
Nature
, vol.414
, Issue.6861
, pp. 322-325
-
-
Nguyen, V.T.1
Kiss, T.2
Michels, A.A.3
Bensaude, O.4
-
10
-
-
4344583992
-
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis
-
DOI 10.1038/nsmb812
-
Espinoza, C.A., Allen, T.A., Hieb, A.R., Kugel, J.F. and Goodrich, J.A. (2004) B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat. Struct. Mol. Biol., 11, 822-829. (Pubitemid 39128797)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.9
, pp. 822-829
-
-
Espinoza, C.A.1
Allen, T.A.2
Hieb, A.R.3
Kugel, J.F.4
Goodrich, J.A.5
-
11
-
-
0033515637
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
-
Lanz, R.B., McKenna, N.J., Onate, S.A., Albrecht, U., Wong, J., Tsai, S.Y., Tsai, M.J. and O'Malley, B.W. (1999) A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell, 97, 17-27. (Pubitemid 29165886)
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 17-27
-
-
Lanz, R.B.1
McKenna, N.J.2
Onate, S.A.3
Albrecht, U.4
Wong, J.5
Tsai, S.Y.6
Tsai, M.-J.7
O'Malley, B.W.8
-
12
-
-
22344445939
-
ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs
-
DOI 10.1083/jcb.200411129
-
Vitali, P., Basyuk, E., Le Meur, E., Bertrand, E., Muscatelli, F., Cavaille, J. and Huttenhofer, A. (2005) ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. J. Cell Biol., 169, 745-753. (Pubitemid 41002880)
-
(2005)
Journal of Cell Biology
, vol.169
, Issue.5
, pp. 745-753
-
-
Vitali, P.1
Basyuk, E.2
Le Meur, E.3
Bertrand, E.4
Muscatelli, F.5
Cavaille, J.6
Huttenhofer, A.7
-
13
-
-
30844442607
-
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
-
DOI 10.1126/science.1118265
-
Kishore, S. and Stamm, S. (2006) The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science, 311, 230-232. (Pubitemid 43108188)
-
(2006)
Science
, vol.311
, Issue.5758
, pp. 230-232
-
-
Kishore, S.1
Stamm, S.2
-
14
-
-
0030461398
-
Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment
-
DOI 10.1126/science.274.5295.2075
-
Nakamura, A., Amikura, R., Mukai, M., Kobayashi, S. and Lasko, P.F. (1996) Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment. Science, 274, 2075-2079. (Pubitemid 27021527)
-
(1996)
Science
, vol.274
, Issue.5295
, pp. 2075-2079
-
-
Nakamura, A.1
Amikura, R.2
Mukai, M.3
Kobayashi, S.4
Lasko, P.F.5
-
15
-
-
0036259726
-
The bereft gene, a potential target of the neural selector gene cut, contributes to bristle morphogenesis
-
Hardiman, K.E., Brewster, R., Khan, S.M., Deo, M. and Bodmer, R. (2002) The bereft gene, a potential target of the neural selector gene cut, contributes to bristle morphogenesis. Genetics, 161, 231-247. (Pubitemid 34564050)
-
(2002)
Genetics
, vol.161
, Issue.1
, pp. 231-247
-
-
Hardiman, K.E.1
Brewster, R.2
Khan, S.M.3
Deo, M.4
Bodmer, R.5
-
16
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
Dinger, M.E., Amaral, P.P., Mercer, T.R., Pang, K.C., Bruce, S.J., Gardiner, B.B., Askarian-Amiri, M.E., Ru, K., Solda, G., Simons, C. et al. (2008) Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res., 18, 1433-1445.
-
(2008)
Genome Res.
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
Amaral, P.P.2
Mercer, T.R.3
Pang, K.C.4
Bruce, S.J.5
Gardiner, B.B.6
Askarian-Amiri, M.E.7
Ru, K.8
Solda, G.9
Simons, C.10
-
17
-
-
61449126060
-
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
-
Ben Amor, B., Wirth, S., Merchan, F., Laporte, P., d'Aubenton- Carafa, Y., Hirsch, J., Maizel, A., Mallory, A., Lucas, A., Deragon, J.M. et al. (2009) Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res., 19, 57-69.
-
(2009)
Genome Res.
, vol.19
, pp. 57-69
-
-
Ben Amor, B.1
Wirth, S.2
Merchan, F.3
Laporte, P.4
D'Aubenton-Carafa, Y.5
Hirsch, J.6
Maizel, A.7
Mallory, A.8
Lucas, A.9
Deragon, J.M.10
-
18
-
-
10344265019
-
A draft sequence for the genome of the domesticated silkworm (Bombyx mori)
-
DOI 10.1126/science.1102210
-
Xia, Q., Zhou, Z., Lu, C., Cheng, D., Dai, F., Li, B., Zhao, P., Zha, X., Cheng, T., Chai, C. et al. (2004) A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science, 306, 1937-1940. (Pubitemid 39627858)
-
(2004)
Science
, vol.306
, Issue.5703
, pp. 1937-1940
-
-
Xia, Q.1
Zhou, Z.2
Lu, C.3
Cheng, D.4
Dai, F.5
Li, B.6
Zhao, P.7
Zha, X.8
Cheng, T.9
Chai, C.10
Pan, G.11
Xu, J.12
Liu, C.13
Lin, Y.14
Qian, J.15
Hou, Y.16
Wu, Z.17
Li, G.18
Pan, M.19
Li, C.20
Shen, Y.21
Lan, X.22
Yuan, L.23
Li, T.24
Xu, H.25
Yang, G.26
Wan, Y.27
Zhu, Y.28
Yu, M.29
Shen, W.30
Wu, D.31
Xiang, Z.32
Yu, J.33
Wang, J.34
Li, R.35
Shi, J.36
Li, H.37
Li, G.38
Su, J.39
Wang, X.40
Li, G.41
Zhang, Z.42
Wu, Q.43
Li, J.44
Zhang, Q.45
Wei, N.46
Xu, J.47
Sun, H.48
Dong, L.49
Liu, D.50
Zhao, S.51
Zhao, X.52
Meng, Q.53
Lan, F.54
Huang, X.55
Li, Y.56
Fang, L.57
Li, C.58
Li, D.59
Sun, Y.60
Zhang, Z.61
Yang, Z.62
Huang, Y.63
Xi, Y.64
Qi, Q.65
He, D.66
Huang, H.67
Zhang, X.68
Wang, Z.69
Li, W.70
Cao, Y.71
Yu, Y.72
Yu, H.73
Li, J.74
Ye, J.75
Chen, H.76
Zhou, Y.77
Liu, B.78
Wang, J.79
Ye, J.80
Ji, H.81
Li, S.82
Ni, P.83
Zhang, J.84
Zhang, Y.85
Zheng, H.86
Mao, B.87
Wang, W.88
Ye, C.89
Li, S.90
Wang, J.91
Wong, G.K.-S.92
Yang, H.93
more..
-
19
-
-
23644457818
-
Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs
-
DOI 10.1261/rna.2380905
-
Huang, Z.P., Zhou, H., He, H.L., Chen, C.L., Liang, D. and Qu, L.H. (2005) Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs. RNA, 11, 1303-1316. (Pubitemid 41132401)
-
(2005)
RNA
, vol.11
, Issue.8
, pp. 1303-1316
-
-
Huang, Z.-P.1
Zhou, H.2
Hua-Liang, H.3
Chen, C.-L.4
Liang, D.5
Liang-Hu, Q.6
-
20
-
-
0038719826
-
RNomics in Drosophila melanogaster: Identification of 66 candidates for novel non-messenger RNAs
-
DOI 10.1093/nar/gkg361
-
Yuan, G., Klambt, C., Bachellerie, J.P., Brosius, J. and Huttenhofer, A. (2003) RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res., 31, 2495-2507. (Pubitemid 37441733)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.10
, pp. 2495-2507
-
-
Yuan, G.1
Klambt, C.2
Bachellerie, J.-P.3
Brosius, J.4
Huttenhofer, A.5
-
21
-
-
51849142774
-
The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
-
Yu, X., Zhou, Q., Li, S.C., Luo, Q., Cai, Y., Lin, W.C., Chen, H., Yang, Y., Hu, S. and Yu, J. (2008) The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages. PLoS ONE, 3, e2997.
-
(2008)
PLoS ONE
, vol.3
-
-
Yu, X.1
Zhou, Q.2
Li, S.C.3
Luo, Q.4
Cai, Y.5
Lin, W.C.6
Chen, H.7
Yang, Y.8
Hu, S.9
Yu, J.10
-
22
-
-
61849171653
-
Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
-
Zhang, Y., Zhou, X., Ge, X., Jiang, J., Li, M., Jia, S., Yang, X., Kan, Y., Miao, X., Zhao, G. et al. (2009) Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori. PLoS One, 4, e4677.
-
(2009)
PLoS One
, vol.4
-
-
Zhang, Y.1
Zhou, X.2
Ge, X.3
Jiang, J.4
Li, M.5
Jia, S.6
Yang, X.7
Kan, Y.8
Miao, X.9
Zhao, G.10
-
23
-
-
30044435097
-
Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression
-
DOI 10.1101/gr.4139206
-
Deng, W., Zhu, X., Skogerbo, G., Zhao, Y., Fu, Z., Wang, Y., He, H., Cai, L., Sun, H., Liu, C. et al. (2006) Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res, 16, 20-29. (Pubitemid 43048930)
-
(2006)
Genome Research
, vol.16
, Issue.1
, pp. 20-29
-
-
Deng, W.1
Zhu, X.2
Skogerbo, G.3
Zhao, Y.4
Fu, Z.5
Wang, Y.6
He, H.7
Cai, L.8
Sun, H.9
Liu, C.10
Li, B.11
Bai, B.12
Wang, J.13
Jia, D.14
Sun, S.15
He, H.16
Cui, Y.17
Wang, Y.18
Bu, D.19
Chen, R.20
more..
-
24
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
25
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T.L. and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
26
-
-
33751009398
-
SnoSeeker: An advanced computational package for screening of guide and orphan snoRNA genes in the human genome
-
DOI 10.1093/nar/gkl672
-
Yang, J.H., Zhang, X.C., Huang, Z.P., Zhou, H., Huang, M.B., Zhang, S., Chen, Y.Q. and Qu, L.H. (2006) snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res., 34, 5112-5123. (Pubitemid 44742476)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.18
, pp. 5112-5123
-
-
Yang, J.-H.1
Zhang, X.-C.2
Huang, Z.-P.3
Zhou, H.4
Huang, M.-B.5
Zhang, S.6
Chen, Y.-Q.7
Qu, L.-H.8
-
27
-
-
0035253857
-
A small nucleolar guide RNA functions both in 2′-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA
-
DOI 10.1093/emboj/20.3.541
-
Jady, B.E. and Kiss, T. (2001) A small nucleolar guide RNA functions both in 20-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. EMBO J., 20, 541-551. (Pubitemid 32126989)
-
(2001)
EMBO Journal
, vol.20
, Issue.3
, pp. 541-551
-
-
Jady, B.E.1
Kiss, T.2
-
28
-
-
59649104079
-
Bombyx small RNAs: Genomic defense system against transposons in the silkworm
-
Kawaoka, S., Hayashi, N., Katsuma, S., Kishino, H., Kohara, Y., Mita, K. and Shimada, T. (2008) Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx mori. Insect Biochem. Mol. Biol., 38, 1058-1065.
-
(2008)
Bombyx Mori. Insect Biochem. Mol. Biol.
, vol.38
, pp. 1058-1065
-
-
Kawaoka, S.1
Hayashi, N.2
Katsuma, S.3
Kishino, H.4
Kohara, Y.5
Mita, K.6
Shimada, T.7
-
29
-
-
0036898607
-
Experimental RNomics: Identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana
-
DOI 10.1016/S0960-9822(02)01304-0, PII S0960982202013040
-
Marker, C., Zemann, A., Terhorst, T., Kiefmann, M., Kastenmayer, J.P., Green, P., Bachellerie, J.P., Brosius, J. and Huttenhofer, A. (2002) Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. Curr. Biol., 12, 2002-2013. (Pubitemid 35450923)
-
(2002)
Current Biology
, vol.12
, Issue.23
, pp. 2002-2013
-
-
Marker, C.1
Zemann, A.2
Terhorst, T.3
Kiefmann, M.4
Kastenmayer, J.P.5
Green, P.6
Bachellerie, J.-P.7
Brosius, J.8
Huttenhofer, A.9
-
30
-
-
0043172414
-
Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells
-
DOI 10.1016/S1097-2765(03)00267-3
-
Hirose, T., Shu, M.D. and Steitz, J.A. (2003) Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells. Mol. Cell, 12, 113-123. (Pubitemid 36945040)
-
(2003)
Molecular Cell
, vol.12
, Issue.1
, pp. 113-123
-
-
Hirose, T.1
Shu, M.-D.2
Steitz, J.A.3
-
31
-
-
0000866275
-
Intronic snoRNA biosynthesis in saccharomyces cerevisiae depends on the lariat-debranching enzyme: Intron length effects and activity of a precursor snoRNA
-
DOI 10.1017/S1355838298980785
-
Ooi, S.L., Samarsky, D.A., Fournier, M.J. and Boeke, J.D. (1998) Intronic snoRNA biosynthesis in Saccharomyces cerevisiae depends on the lariat-debranching enzyme: intron length effects and activity of a precursor snoRNA. RNA, 4, 1096-1110. (Pubitemid 28413456)
-
(1998)
RNA
, vol.4
, Issue.9
, pp. 1096-1110
-
-
Ooi, S.L.1
Samarsky, D.A.2
Fournier, M.J.3
Boeke, J.D.4
-
32
-
-
38449092636
-
SnoReport: Computational identification of snoRNAs with unknown targets
-
Hertel, J., Hofacker, I.L. and Stadler, P.F. (2008) SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics, 24, 158-164.
-
(2008)
Bioinformatics
, vol.24
, pp. 158-164
-
-
Hertel, J.1
Hofacker, I.L.2
Stadler, P.F.3
-
33
-
-
25844458478
-
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
-
DOI 10.1101/gad.354405
-
Udekwu, K.I., Darfeuille, F., Vogel, J., Reimegard, J., Holmqvist, E. and Wagner, E.G. (2005) Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev., 19, 2355-2366. (Pubitemid 41396912)
-
(2005)
Genes and Development
, vol.19
, Issue.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegard, J.4
Holmqvist, E.5
Wagner, E.G.H.6
-
34
-
-
33751383274
-
E-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
-
DOI 10.1111/j.1365-2958.2006.05524.x
-
Papenfort, K., Pfeiffer, V., Mika, F., Lucchini, S., Hinton, J.C. and Vogel, J. (2006) SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol. Microbiol., 62, 1674-1688. (Pubitemid 44813812)
-
(2006)
Molecular Microbiology
, vol.62
, Issue.6
, pp. 1674-1688
-
-
Papenfort, K.1
Pfeiffer, V.2
Mika, F.3
Lucchini, S.4
Hinton, J.C.D.5
Vogel, J.6
-
35
-
-
40449110935
-
The enigmatic world of mRNA-like ncRNAs: Their role in human evolution and in human diseases
-
Szell, M., Bata-Csorgo, Z. and Kemeny, L. (2008) The enigmatic world of mRNA-like ncRNAs: their role in human evolution and in human diseases. Semin. Cancer Biol., 18, 141-148.
-
(2008)
Semin. Cancer Biol.
, vol.18
, pp. 141-148
-
-
Szell, M.1
Bata-Csorgo, Z.2
Kemeny, L.3
-
36
-
-
20644449571
-
An abundance of RNA regulators
-
DOI 10.1146/annurev.biochem.74.082803.133136
-
Storz, G., Altuvia, S. and Wassarman, K.M. (2005) An abundance of RNA regulators. Annu. Rev. Biochem., 74, 199-217. (Pubitemid 40995506)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 199-217
-
-
Storz, G.1
Altuvia, S.2
Wassarman, K.M.3
-
37
-
-
0035898634
-
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
-
DOI 10.1093/emboj/20.14.3617
-
Kiss, T. (2001) Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J., 20, 3617-3622. (Pubitemid 32691772)
-
(2001)
EMBO Journal
, vol.20
, Issue.14
, pp. 3617-3622
-
-
Kiss, T.1
-
38
-
-
33846169089
-
Eukaryotic regulatory RNAs: An answer to the 'genome complexity' conundrum
-
DOI 10.1101/gad.1484207
-
Prasanth, K.V. and Spector, D.L. (2007) Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev., 21, 11-42. (Pubitemid 46089704)
-
(2007)
Genes and Development
, vol.21
, Issue.1
, pp. 11-42
-
-
Prasanth, K.V.1
Spector, D.L.2
-
39
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M., Nishida, H., Yap, C.C., Suzuki, M., Kawai, J. et al. (2005) Antisense transcription in the mammalian transcriptome. Science, 309, 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
-
40
-
-
44349144551
-
Comparative expression analysis uncovers novel features of endogenous antisense transcription
-
DOI 10.1093/hmg/ddn051
-
Okada, Y., Tashiro, C., Numata, K., Watanabe, K., Nakaoka, H., Yamamoto, N., Okubo, K., Ikeda, R., Saito, R., Kanai, A. et al. (2008) Comparative expression analysis uncovers novel features of endogenous antisense transcription. Hum. Mol. Genet., 17, 1631-1640. (Pubitemid 351737167)
-
(2008)
Human Molecular Genetics
, vol.17
, Issue.11
, pp. 1631-1640
-
-
Okada, Y.1
Tashiro, C.2
Numata, K.3
Watanabe, K.4
Nakaoka, H.5
Yamamoto, N.6
Okubo, K.7
Ikeda, R.8
Saito, R.9
Kanai, A.10
Abe, K.11
Tomita, M.12
Kiyosawa, H.13
-
41
-
-
33846074755
-
RNAdb 2.0 - An expanded database of mammalian non-coding RNAs
-
DOI 10.1093/nar/gkl926
-
Pang, K.C., Stephen, S., Dinger, M.E., Engstrom, P.G., Lenhard, B. and Mattick, J.S. (2007) RNAdb 2.0-an expanded database of mammalian non-coding RNAs. Nucleic Acids Res., 35, D178-D182. (Pubitemid 46056194)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Pang, K.C.1
Stephen, S.2
Dinger, M.E.3
Engstrom, P.G.4
Lenhard, B.5
Mattick, J.S.6
-
42
-
-
33644875300
-
SnoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
Lestrade, L. and Weber, M.J. (2006) snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res., 34, D158-D162.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Lestrade, L.1
Weber, M.J.2
-
43
-
-
0037264089
-
Plant snoRNAs: Functional evolution and new modes of gene expression
-
DOI 10.1016/S1360-1385(02)00007-9, PII S1360138502000079
-
Brown, J.W., Echeverria, M. and Qu, L.H. (2003) Plant snoRNAs: functional evolution and new modes of gene expression. Trends Plant Sci., 8, 42-49. (Pubitemid 36725966)
-
(2003)
Trends in Plant Science
, vol.8
, Issue.1
, pp. 42-49
-
-
Brown, J.W.S.1
Echeverria, M.2
Qu, L.-H.3
-
44
-
-
71049154451
-
Systematic identification and characterization of chicken (Gallus gallus) ncRNAs
-
Zhang, Y., Wang, J., Huang, S., Zhu, X., Liu, J., Yang, N., Song, D., Wu, R., Deng, W., Skogerbo, G. et al. (2009) Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Res., 37, 6562-6574.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6562-6574
-
-
Zhang, Y.1
Wang, J.2
Huang, S.3
Zhu, X.4
Liu, J.5
Yang, N.6
Song, D.7
Wu, R.8
Deng, W.9
Skogerbo, G.10
-
46
-
-
0025580878
-
The numerous modified nucleotides in eukaryotic ribosomal RNA
-
Maden, B.E. (1990) The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol., 39, 241-303.
-
(1990)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.39
, pp. 241-303
-
-
Maden, B.E.1
-
47
-
-
0036703184
-
The expanding snoRNA world
-
DOI 10.1016/S0300-9084(02)01402-5, PII S0300908402014025
-
Bachellerie, J.P., Cavaille, J. and Huttenhofer, A. (2002) The expanding snoRNA world. Biochimie, 84, 775-790. (Pubitemid 35363462)
-
(2002)
Biochimie
, vol.84
, Issue.8
, pp. 775-790
-
-
Bachellerie, J.-P.1
Cavaille, J.2
Huttenhofer, A.3
-
48
-
-
0037133942
-
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
-
DOI 10.1016/S0092-8674(02)00718-3
-
Kiss, T. (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell, 109, 145-148. (Pubitemid 34518252)
-
(2002)
Cell
, vol.109
, Issue.2
, pp. 145-148
-
-
Kiss, T.1
-
49
-
-
37349128219
-
RRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
-
DOI 10.1016/j.molcel.2007.10.012, PII S1097276507006946
-
Liang, X.H., Liu, Q. and Fournier, M.J. (2007) rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol. Cell, 28, 965-977. (Pubitemid 350297021)
-
(2007)
Molecular Cell
, vol.28
, Issue.6
, pp. 965-977
-
-
Liang, X.-h.1
Liu, Q.2
Fournier, M.J.3
-
50
-
-
17844396478
-
A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification
-
DOI 10.1261/rna.7174805
-
Liang, X.H., Uliel, S., Hury, A., Barth, S., Doniger, T., Unger, R. and Michaeli, S. (2005) A genome-wide analysis of C/D and H/ ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification. RNA, 11, 619-645. (Pubitemid 40594330)
-
(2005)
RNA
, vol.11
, Issue.5
, pp. 619-645
-
-
Liang, X.-H.1
Uliel, S.2
Hury, A.3
Barth, S.4
Doniger, T.5
Unger, R.6
Michaeli, S.7
-
51
-
-
0035355205
-
Rnomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
-
DOI 10.1093/emboj/20.11.2943
-
Huttenhofer, A., Kiefmann, M., Meier-Ewert, S., O'Brien, J., Lehrach, H., Bachellerie, J.P. and Brosius, J. (2001) RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J., 20, 2943-2953. (Pubitemid 32938577)
-
(2001)
EMBO Journal
, vol.20
, Issue.11
, pp. 2943-2953
-
-
Huttenhofer, A.1
Kiefmann, M.2
Meier-Ewert, S.3
O'brien, J.4
Lehrach, H.5
Bachellerie, J.-P.6
Brosius, J.7
-
52
-
-
70349661909
-
Human miRNA precursors with box H/ACA snoRNA features
-
Scott, M.S., Avolio, F., Ono, M., Lamond, A.I. and Barton, G.J. (2009) Human miRNA precursors with box H/ACA snoRNA features. PLoS Comput. Biol., 5, e1000507.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Scott, M.S.1
Avolio, F.2
Ono, M.3
Lamond, A.I.4
Barton, G.J.5
-
53
-
-
57149094023
-
SnoRNA, a novel precursor of microRNA in Giardia lamblia
-
Saraiya, A.A. and Wang, C.C. (2008) snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog., 4, e1000224.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Saraiya, A.A.1
Wang, C.C.2
-
54
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
Ender, C., Krek, A., Friedlander, M.R., Beitzinger, M., Weinmann, L., Chen, W., Pfeffer, S., Rajewsky, N. and Meister, G. (2008) A human snoRNA with microRNA-like functions. Mol. Cell, 32, 519-528.
-
(2008)
Mol. Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
Krek, A.2
Friedlander, M.R.3
Beitzinger, M.4
Weinmann, L.5
Chen, W.6
Pfeffer, S.7
Rajewsky, N.8
Meister, G.9
-
55
-
-
72749089855
-
A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
-
Lee, Y.S., Shibata, Y., Malhotra, A. and Dutta, A. (2009) A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev., 23, 2639-2649.
-
(2009)
Genes Dev.
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
56
-
-
77950202393
-
Human tRNA-derived small RNAs in the global regulation of RNA silencing
-
Haussecker, D., Huang, Y., Lau, A., Parameswaran, P., Fire, A.Z. and Kay, M.A. (2010) Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA, 16, 673-695.
-
(2010)
RNA
, vol.16
, pp. 673-695
-
-
Haussecker, D.1
Huang, Y.2
Lau, A.3
Parameswaran, P.4
Fire, A.Z.5
Kay, M.A.6
-
57
-
-
54349104464
-
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
-
Babiarz, J.E., Ruby, J.G., Wang, Y., Bartel, D.P. and Blelloch, R. (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev., 22, 2773-2785.
-
(2008)
Genes Dev.
, vol.22
, pp. 2773-2785
-
-
Babiarz, J.E.1
Ruby, J.G.2
Wang, Y.3
Bartel, D.P.4
Blelloch, R.5
-
58
-
-
56049119367
-
Stress-induced tRNA-derived RNAs: A novel class of small RNAs in the primitive eukaryote Giardia lamblia
-
Li, Y., Luo, J., Zhou, H., Liao, J.Y., Ma, L.M., Chen, Y.Q. and Qu, L.H. (2008) Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia. Nucleic Acids Res., 36, 6048-6055.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6048-6055
-
-
Li, Y.1
Luo, J.2
Zhou, H.3
Liao, J.Y.4
Ma, L.M.5
Chen, Y.Q.6
Qu, L.H.7
-
59
-
-
67649386471
-
Small RNAs derived from snoRNAs
-
Taft, R.J., Glazov, E.A., Lassmann, T., Hayashizaki, Y., Carninci, P. and Mattick, J.S. (2009) Small RNAs derived from snoRNAs. RNA, 15, 1233-1240.
-
(2009)
RNA
, vol.15
, pp. 1233-1240
-
-
Taft, R.J.1
Glazov, E.A.2
Lassmann, T.3
Hayashizaki, Y.4
Carninci, P.5
Mattick, J.S.6
-
60
-
-
22244492008
-
The Cm56 tRNA modification in archaea is catalyzed either by a specific 2′-O-methylase, or a C/D sRNP
-
DOI 10.1261/rna.2110805
-
Renalier, M.H., Joseph, N., Gaspin, C., Thebault, P. and Mougin, A. (2005) The Cm56 tRNA modification in archaea is catalyzed either by a specific 20-O-methylase, or a C/D sRNP. RNA, 11, 1051-1063. (Pubitemid 40994186)
-
(2005)
RNA
, vol.11
, Issue.7
, pp. 1051-1063
-
-
Renalier, M.-H.1
Joseph, N.2
Gaspin, C.3
Thebault, P.4
Mougin, A.5
-
61
-
-
9144256178
-
Trp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA
-
DOI 10.1074/jbc.M408868200
-
Singh, S.K., Gurha, P., Tran, E.J., Maxwell, E.S. and Gupta, R. (2004) Sequential 20-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA. J. Biol. Chem., 279, 47661-47671. (Pubitemid 39540912)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.46
, pp. 47661-47671
-
-
Singh, S.K.1
Gurha, P.2
Tran, E.J.3
Maxwell, E.S.4
Gupta, R.5
-
62
-
-
45749152098
-
Dynamic guide-target interactions contribute to sequential 2′-O-methylation by a unique archaeal dual guide box C/D sRNP
-
DOI 10.1261/rna.1003308
-
Singh, S.K., Gurha, P. and Gupta, R. (2008) Dynamic guide-target interactions contribute to sequential 20-O-methylation by a unique archaeal dual guide box C/D sRNP. RNA, 14, 1411-1423. (Pubitemid 351872197)
-
(2008)
RNA
, vol.14
, Issue.7
, pp. 1411-1423
-
-
Singh, S.K.1
Gurha, P.2
Gupta, R.3
-
63
-
-
33646922629
-
Evolution of small nucleolar RNAs in nematodes
-
DOI 10.1093/nar/gkl359
-
Zemann, A., op de Bekke, A., Kiefmann, M., Brosius, J. and Schmitz, J. (2006) Evolution of small nucleolar RNAs in nematodes. Nucleic Acids Res., 34, 2676-2685. (Pubitemid 43985630)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.9
, pp. 2676-2685
-
-
Zemann, A.1
Op De Bekke, A.2
Kiefmann, M.3
Brosius, J.4
Schmitz, J.5
-
64
-
-
0032529175
-
Nucleolar localization of early tRNA processing
-
Bertrand, E., Houser-Scott, F., Kendall, A., Singer, R.H. and Engelke, D.R. (1998) Nucleolar localization of early tRNA processing. Genes Dev., 12, 2463-2468. (Pubitemid 28406949)
-
(1998)
Genes and Development
, vol.12
, Issue.16
, pp. 2463-2468
-
-
Bertrand, E.1
Houser-Scott, F.2
Kendall, A.3
Singer, R.H.4
Engelke, D.R.5
-
65
-
-
0034192459
-
Nucleolar localization of human methionyl-tRNA synthetase and its role in ribosomal RNA synthesis
-
DOI 10.1083/jcb.149.3.567
-
Ko, Y.G., Kang, Y.S., Kim, E.K., Park, S.G. and Kim, S. (2000) Nucleolar localization of human methionyl-tRNA synthetase and its role in ribosomal RNA synthesis. J. Cell Biol., 149, 567-574. (Pubitemid 30252391)
-
(2000)
Journal of Cell Biology
, vol.149
, Issue.3
, pp. 567-574
-
-
Ko, Y.-G.1
Kang, Y.-S.2
Kim, E.-K.3
Park, S.G.4
Kim, S.5
-
66
-
-
52249083736
-
Splicing by exon exclusion impaired by artificial box C/D RNA targeted to branch-point adenosine
-
Semenov, D.V., Vratskih, O.V., Kuligina, E.V. and Richter, V.A. (2008) Splicing by exon exclusion impaired by artificial box C/D RNA targeted to branch-point adenosine. Ann. NY Acad. Sci., 1137, 119-124.
-
(2008)
Ann. NY Acad. Sci.
, vol.1137
, pp. 119-124
-
-
Semenov, D.V.1
Vratskih, O.V.2
Kuligina, E.V.3
Richter, V.A.4
-
67
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi, V., Ellis, J.D., Shen, Z., Song, D.Y., Pan, Q., Watt, A.T., Freier, S.M., Bennett, C.F., Sharma, A., Bubulya, P.A. et al. (2010) The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol. Cell, 39, 925-938.
-
(2010)
Mol. Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
Freier, S.M.7
Bennett, C.F.8
Sharma, A.9
Bubulya, P.A.10
-
68
-
-
57149111586
-
Small RNA binding to 50 mRNA coding region inhibits translational initiation
-
Bouvier, M., Sharma, C.M., Mika, F., Nierhaus, K.H. and Vogel, J. (2008) Small RNA binding to 50 mRNA coding region inhibits translational initiation. Mol. Cell, 32, 827-837.
-
(2008)
Mol. Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
69
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
Pfeiffer, V., Papenfort, K., Lucchini, S., Hinton, J.C. and Vogel, J. (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat. Struct. Mol. Biol., 16, 840-846.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
70
-
-
0035312246
-
Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana
-
Qu, L.H., Meng, Q., Zhou, H. and Chen, Y.Q. (2001) Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana. Nucleic Acids Res., 29, 1623-1630.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1623-1630
-
-
Qu, L.H.1
Meng, Q.2
Zhou, H.3
Chen, Y.Q.4
-
71
-
-
0006079202
-
A novel snoRNA gene cluster in yeast is transcribed as polycistronic pre-snoRNAs
-
Lu, Y., Zhou, H., Zhou, W., Zhu, Y. and Qu, L. (1999) A novel snoRNA gene cluster in yeast is transcribed as polycistronic pre-snoRNAs. Sci. China C Life Sci., 42, 529-537.
-
(1999)
Sci. China C Life Sci.
, vol.42
, pp. 529-537
-
-
Lu, Y.1
Zhou, H.2
Zhou, W.3
Zhu, Y.4
Qu, L.5
-
72
-
-
0037100633
-
A novel gene organization: Intronic snoRNA gene clusters from Oryza sativa
-
Liang, D., Zhou, H., Zhang, P., Chen, Y.Q., Chen, X., Chen, C.L. and Qu, L.H. (2002) A novel gene organization: intronic snoRNA gene clusters from Oryza sativa. Nucleic Acids Res., 30, 3262-3272. (Pubitemid 34846190)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.14
, pp. 3262-3272
-
-
Liang, D.1
Zhou, H.2
Zhang, P.3
Chen, Y.-Q.4
Chen, X.5
Chen, C.-L.6
Qu, L.-H.7
-
73
-
-
62349134063
-
Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs
-
Shao, P., Yang, J.H., Zhou, H., Guan, D.G. and Qu, L.H. (2009) Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs. BMC Genomics, 10, 86.
-
(2009)
BMC Genomics
, vol.10
, pp. 86
-
-
Shao, P.1
Yang, J.H.2
Zhou, H.3
Guan, D.G.4
Qu, L.H.5
-
74
-
-
18144378047
-
Identification and functional analysis of 20 box H/ACA small nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe
-
DOI 10.1074/jbc.M500326200
-
Li, S.G., Zhou, H., Luo, Y.P., Zhang, P. and Qu, L.H. (2005) Identification and functional analysis of 20 Box H/ACA small nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe. J. Biol. Chem., 280, 16446-16455. (Pubitemid 40616775)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.16
, pp. 16446-16455
-
-
Li, S.-G.1
Zhou, H.2
Luo, Y.-P.3
Zhang, P.4
Qu, L.-H.5
-
75
-
-
4043120552
-
Genome-wide searching for pseudouridylation guide snoRNAs: Analysis of the Saccharomyces cerevisiae genome
-
DOI 10.1093/nar/gkh768
-
Schattner, P., Decatur, W.A., Davis, C.A., Ares, M. Jr, Fournier, M.J. and Lowe, T.M. (2004) Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res., 32, 4281-4296. (Pubitemid 39232300)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.14
, pp. 4281-4296
-
-
Schattner, P.1
Decatur, W.A.2
Davis, C.A.3
Ares Jr., M.4
Fournier, M.J.5
Lowe, T.M.6
-
76
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
DOI 10.1038/nbt808
-
Yelin, R., Dahary, D., Sorek, R., Levanon, E.Y., Goldstein, O., Shoshan, A., Diber, A., Biton, S., Tamir, Y., Khosravi, R. et al. (2003) Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol., 21, 379-386. (Pubitemid 36397657)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.4
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
Levanon, E.Y.4
Goldstein, O.5
Shoshan, A.6
Diber, A.7
Biton, S.8
Tamir, Y.9
Khosravi, R.10
Nemzer, S.11
Pinner, E.12
Walach, S.13
Bernstein, J.14
Savitsky, K.15
Rotman, G.16
-
77
-
-
4444376317
-
Over 20% of human transcripts might form sense-antisense pairs
-
DOI 10.1093/nar/gkh818
-
Chen, J., Sun, M., Kent, W.J., Huang, X., Xie, H., Wang, W., Zhou, G., Shi, R.Z. and Rowley, J.D. (2004) Over 20% of human transcripts might form sense-antisense pairs. Nucleic Acids Res., 32, 4812-4820. (Pubitemid 39429685)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.16
, pp. 4812-4820
-
-
Chen, J.1
Sun, M.2
Kent, W.J.3
Huang, X.4
Xie, H.5
Wang, W.6
Zhou, G.7
Shi, R.Z.8
Rowley, J.D.9
-
78
-
-
33746785696
-
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
-
Zhang, Y., Liu, X.S., Liu, Q.R. and Wei, L. (2006) Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res., 34, 3465-3475.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3465-3475
-
-
Zhang, Y.1
Liu, X.S.2
Liu, Q.R.3
Wei, L.4
-
79
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
DOI 10.1101/gr.982903
-
Kiyosawa, H., Yamanaka, I., Osato, N., Kondo, S. and Hayashizaki, Y. (2003) Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res., 13, 1324-1334. (Pubitemid 36827228)
-
(2003)
Genome Research
, vol.13
, Issue.6
, pp. 1324-1334
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Kondo, S.4
Arakawa, T.5
Carninci, P.6
Kawai, J.7
Hayashizaki, Y.8
-
80
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
Misra, S., Crosby, M.A., Mungall, C.J., Matthews, B.B., Campbell, K.S., Hradecky, P., Huang, Y., Kaminker, J.S., Millburn, G.H., Prochnik, S.E. et al. (2002) Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol., 3, RESEARCH0083.
-
(2002)
Genome Biol.
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
-
81
-
-
24644448635
-
Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
-
Wang, X.J., Gaasterland, T. and Chua, N.H. (2005) Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol., 6, R30.
-
(2005)
Genome Biol.
, vol.6
-
-
Wang, X.J.1
Gaasterland, T.2
Chua, N.H.3
-
82
-
-
1442329649
-
Antisense transcripts with rice full-length cDNAs
-
Osato, N., Yamada, H., Satoh, K., Ooka, H., Yamamoto, M., Suzuki, K., Kawai, J., Carninci, P., Ohtomo, Y., Murakami, K. et al. (2003) Antisense transcripts with rice full-length cDNAs. Genome Biol., 5, R5.
-
(2003)
Genome Biol.
, vol.5
-
-
Osato, N.1
Yamada, H.2
Satoh, K.3
Ooka, H.4
Yamamoto, M.5
Suzuki, K.6
Kawai, J.7
Carninci, P.8
Ohtomo, Y.9
Murakami, K.10
-
83
-
-
0030757318
-
Regulation of gene expression by natural antisense RNA transcripts
-
DOI 10.1016/S0197-0186(96)00108-8, PII S0197018696001088
-
Knee, R. and Murphy, P.R. (1997) Regulation of gene expression by natural antisense RNA transcripts. Neurochem. Int., 31, 379-392. (Pubitemid 27299771)
-
(1997)
Neurochemistry International
, vol.31
, Issue.3
, pp. 379-392
-
-
Knee, R.1
Murphy, P.R.2
-
84
-
-
0031737516
-
Antisense RNA: Function and fate of duplex RNA in cells of higher eukaryotes
-
Kumar, M. and Carmichael, G.G. (1998) Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes. Microbiol. Mol. Biol. Rev., 62, 1415-1434. (Pubitemid 28558304)
-
(1998)
Microbiology and Molecular Biology Reviews
, vol.62
, Issue.4
, pp. 1415-1434
-
-
Kumar, M.1
Carmichael, G.G.2
-
85
-
-
0036718498
-
Antisense RNA in imprinting: Spreading silence through Air
-
Rougeulle, C. and Heard, E. (2002) Antisense RNA in imprinting: spreading silence through Air. Trends Genet., 18, 434-437.
-
(2002)
Trends Genet.
, vol.18
, pp. 434-437
-
-
Rougeulle, C.1
Heard, E.2
-
87
-
-
0026048095
-
Inhibition of pre-mRNA splicing by antisense RNA in vitro: Effect of RNA containing sequences complementary to introns
-
Volloch, V., Schweitzer, B. and Rits, S. (1991) Inhibition of pre-mRNA splicing by antisense RNA in vitro: effect of RNA containing sequences complementary to introns. Biochem. Biophys. Res. Commun., 179, 1600-1605.
-
(1991)
Biochem. Biophys. Res. Commun.
, vol.179
, pp. 1600-1605
-
-
Volloch, V.1
Schweitzer, B.2
Rits, S.3
-
88
-
-
0024066566
-
Antisense RNA inhibits splicing of pre-mRNA in vitro
-
Munroe, S.H. (1988) Antisense RNA inhibits splicing of pre-mRNA in vitro. EMBO J., 7, 2523-2532.
-
(1988)
EMBO J.
, vol.7
, pp. 2523-2532
-
-
Munroe, S.H.1
-
89
-
-
70350128252
-
Non-coding RNA transcripts: Sensors of neuronal stress modulators of synaptic plasticity, and agents of change in the onset of Alzheimer's disease
-
St Laurent, G. 3rd, Faghihi, M.A. and Wahlestedt, C. (2009) Non-coding RNA transcripts: sensors of neuronal stress, modulators of synaptic plasticity, and agents of change in the onset of Alzheimer's disease. Neurosci. Lett., 466, 81-88.
-
(2009)
Neurosci. Lett.
, vol.466
, pp. 81-88
-
-
St Laurent III, G.1
Faghihi, M.A.2
Wahlestedt, C.3
-
90
-
-
65549103396
-
The non-coding RNA gadd7 is a regulator of lipid-induced oxidative and endoplasmic reticulum stress
-
Brookheart, R.T., Michel, C.I., Listenberger, L.L., Ory, D.S. and Schaffer, J.E. (2009) The non-coding RNA gadd7 is a regulator of lipid-induced oxidative and endoplasmic reticulum stress. J. Biol. Chem., 284, 7446-7454.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7446-7454
-
-
Brookheart, R.T.1
Michel, C.I.2
Listenberger, L.L.3
Ory, D.S.4
Schaffer, J.E.5
-
91
-
-
34548758619
-
A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions
-
DOI 10.1093/pcp/pcm098
-
Nakamura, T., Naito, K., Yokota, N., Sugita, C. and Sugita, M. (2007) A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions. Plant Cell Physiol., 48, 1309-1318. (Pubitemid 47428917)
-
(2007)
Plant and Cell Physiology
, vol.48
, Issue.9
, pp. 1309-1318
-
-
Nakamura, T.1
Naito, K.2
Yokota, N.3
Sugita, C.4
Sugita, M.5
-
92
-
-
0034687740
-
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization
-
DOI 10.1073/pnas.250426397
-
Cavaille, J., Buiting, K., Kiefmann, M., Lalande, M., Brannan, C.I., Horsthemke, B., Bachellerie, J.P., Brosius, J. and Huttenhofer, A. (2000) Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl Acad. Sci. USA, 97, 14311-14316. (Pubitemid 32016572)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.26
, pp. 14311-14316
-
-
Cavaille, J.1
Buiting, K.2
Kiefmann, M.3
Lalande, M.4
Brannan, C.I.5
Horsthemke, B.6
Bachellerie, J.-P.7
Brosius, J.8
Huttenhofer, A.9
-
93
-
-
0035854708
-
A novel brain-specific box C/D small nucleolar RNA processed from tandemly repeated introns of a noncoding RNA gene in rats
-
Cavaille, J., Vitali, P., Basyuk, E., Huttenhofer, A. and Bachellerie, J.P. (2001) A novel brain-specific box C/D small nucleolar RNA processed from tandemly repeated introns of a noncoding RNA gene in rats. J. Biol. Chem., 276, 26374-26383.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 26374-26383
-
-
Cavaille, J.1
Vitali, P.2
Basyuk, E.3
Huttenhofer, A.4
Bachellerie, J.P.5
-
94
-
-
72449188628
-
The developmentally active and stress-inducible non-coding hsr{omega} gene is a novel regulator of apoptosis in Drosophila
-
Mallik, M. and Lakhotia, S.C. (2009) The developmentally active and stress-inducible non-coding hsr{omega} gene is a novel regulator of apoptosis in Drosophila. Genetics, 183, 831-852.
-
(2009)
Genetics
, vol.183
, pp. 831-852
-
-
Mallik, M.1
Lakhotia, S.C.2
-
95
-
-
51649130508
-
Role of non-coding RNAs in neurodegeneration and stress response in Drosophila
-
Savvateeva-Popova, E., Medvedeva, A., Popov, A. and Evgen'ev, M. (2008) Role of non-coding RNAs in neurodegeneration and stress response in Drosophila. Biotechnol. J., 3, 1010-1021.
-
(2008)
Biotechnol. J.
, vol.3
, pp. 1010-1021
-
-
Savvateeva-Popova, E.1
Medvedeva, A.2
Popov, A.3
Evgen'Ev, M.4
-
96
-
-
51849154682
-
Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize
-
Ma, J., Yan, B., Qu, Y., Qin, F., Yang, Y., Hao, X., Yu, J., Zhao, Q., Zhu, D. and Ao, G. (2008) Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize. J. Cell Biochem., 105, 136-146.
-
(2008)
J. Cell Biochem.
, vol.105
, pp. 136-146
-
-
Ma, J.1
Yan, B.2
Qu, Y.3
Qin, F.4
Yang, Y.5
Hao, X.6
Yu, J.7
Zhao, Q.8
Zhu, D.9
Ao, G.10
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