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Volumn 4, Issue 9, 1998, Pages 1096-1110

Intronic snoRNA biosynthesis in saccharomyces cerevisiae depends on the lariat-debranching enzyme: Intron length effects and activity of a precursor snoRNA

Author keywords

DBR1; Intronic snoRNA processing; rRNA methylation; Yeast

Indexed keywords

COMPLEMENTARY RNA;

EID: 0000866275     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838298980785     Document Type: Article
Times cited : (101)

References (44)
  • 2
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
    • Balakin AG, Smith L, Fournier MJ. 1996. The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions. Cell 86:823-834.
    • (1996) Cell , vol.86 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 3
    • 0031922811 scopus 로고    scopus 로고
    • Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding
    • Bortolin ML, Kiss T. 1998. Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding. RNA 4:445-453.
    • (1998) RNA , vol.4 , pp. 445-453
    • Bortolin, M.L.1    Kiss, T.2
  • 4
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruptions and other applications
    • Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD. 1998. Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruptions and other applications. Yeast 74:115-132.
    • (1998) Yeast , vol.74 , pp. 115-132
    • Brachmann, C.B.1    Davies, A.2    Cost, G.J.3    Caputo, E.4    Li, J.5    Hieter, P.6    Boeke, J.D.7
  • 5
    • 0000386558 scopus 로고
    • Analysis of RNA by Northern and slot blot hybridization
    • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K, eds. New York: John Wiley & Sons, Inc.
    • Brown T. 1993. Analysis of RNA by Northern and slot blot hybridization. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K, eds. Current protocols in molecular biology. New York: John Wiley & Sons, Inc. pp 4.9.1-4.9.14.
    • (1993) Current Protocols in Molecular Biology , pp. 491-4914
    • Brown, T.1
  • 6
    • 0028256401 scopus 로고
    • In vitro study of processing of the intron-encoded U16 small nucleolar RNA in Xenopus laevis
    • Caffarelli E, Arese M, Santoro B, Fragapane P, Bozzoni I. 1994. In vitro study of processing of the intron-encoded U16 small nucleolar RNA in Xenopus laevis. Mol Cell Biol 14:2966-2974.
    • (1994) Mol Cell Biol , vol.14 , pp. 2966-2974
    • Caffarelli, E.1    Arese, M.2    Santoro, B.3    Fragapane, P.4    Bozzoni, I.5
  • 7
    • 0029919357 scopus 로고    scopus 로고
    • Processing of the intron-encoded U16 and U18 snoRNAs: The conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA
    • Caffarelli E, Fatica A, Prislei S, De Gregorio E, Fragapane P, Bozzoni I. 1996. Processing of the intron-encoded U16 and U18 snoRNAs: The conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA. EMBO J 15:1121-1131.
    • (1996) EMBO J , vol.15 , pp. 1121-1131
    • Caffarelli, E.1    Fatica, A.2    Prislei, S.3    De Gregorio, E.4    Fragapane, P.5    Bozzoni, I.6
  • 8
    • 0029826456 scopus 로고    scopus 로고
    • Processing of fibrillarin-associated snoRNAs from pre-mRNA introns: An exonucleolytic process exclusively directed by the common stem-box terminal structure
    • Cavaille J, Bachellerie JP. 1996. Processing of fibrillarin-associated snoRNAs from pre-mRNA introns: An exonucleolytic process exclusively directed by the common stem-box terminal structure. Biochimie 78:443-456.
    • (1996) Biochimie , vol.78 , pp. 443-456
    • Cavaille, J.1    Bachellerie, J.P.2
  • 9
    • 0029808113 scopus 로고    scopus 로고
    • Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides
    • Cavaille J, Nicoloso M, Bachellerie JP. 1996. Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 383:732-735.
    • (1996) Nature , vol.383 , pp. 732-735
    • Cavaille, J.1    Nicoloso, M.2    Bachellerie, J.P.3
  • 10
    • 0028871803 scopus 로고
    • The Xenopus intron-encoded U17 snoRNA is produced by exonucleolytic processing of its precursor in oocytes
    • Cecconi F, Mariottini P, Amaldi F. 1995. The Xenopus intron-encoded U17 snoRNA is produced by exonucleolytic processing of its precursor in oocytes. Nucleic Acids Res 23:4670-4676.
    • (1995) Nucleic Acids Res , vol.23 , pp. 4670-4676
    • Cecconi, F.1    Mariottini, P.2    Amaldi, F.3
  • 11
    • 0025755924 scopus 로고
    • Isolation and characterization of the gene encoding yeast debranching enzyme
    • Chapman KB, Boeke JD. 1991. Isolation and characterization of the gene encoding yeast debranching enzyme. Cell 65:483-492.
    • (1991) Cell , vol.65 , pp. 483-492
    • Chapman, K.B.1    Boeke, J.D.2
  • 12
    • 0000593120 scopus 로고
    • Preparation of yeast RNA
    • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. New York: John Wiley & Sons, Inc.
    • Collart MA, Oliviero S. 1993. Preparation of yeast RNA. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. Current protocols in molecular biology. New York: John Wiley & Sons, Inc. pp 13.12.1-13.12.5.
    • (1993) Current Protocols in Molecular Biology , pp. 13121-13125
    • Collart, M.A.1    Oliviero, S.2
  • 13
    • 0027170544 scopus 로고
    • A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA
    • Fragapane P, Prislei S, Michienzi A, Caffarelli E, Bozzoni I. 1993. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. EMBO J 12:2921-2928.
    • (1993) EMBO J , vol.12 , pp. 2921-2928
    • Fragapane, P.1    Prislei, S.2    Michienzi, A.3    Caffarelli, E.4    Bozzoni, I.5
  • 14
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot P, Bortolin ML, Kiss T. 1997a. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89:799-809.
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 15
    • 0031003901 scopus 로고    scopus 로고
    • The family of box ACA small nucleolar RNAs is defined by an evolutionary conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation
    • Ganot P, Caizergues-Ferrer M, Kiss T. 1997b. The family of box ACA small nucleolar RNAs is defined by an evolutionary conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes & Dev 11:941-956.
    • (1997) Genes & Dev , vol.11 , pp. 941-956
    • Ganot, P.1    Caizergues-Ferrer, M.2    Kiss, T.3
  • 16
    • 0030604698 scopus 로고    scopus 로고
    • Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85:1077-1088.
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 17
    • 0242614611 scopus 로고    scopus 로고
    • Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA
    • Kiss-Laszlo Z, Henry Y, Kiss T. 1998. Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA. EMBO J 17:797-807.
    • (1998) EMBO J , vol.17 , pp. 797-807
    • Kiss-Laszlo, Z.1    Henry, Y.2    Kiss, T.3
  • 18
    • 0029068460 scopus 로고
    • Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns
    • Kiss T, Filipowicz W. 1995. Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns. Genes & Dev 9:1411-1424.
    • (1995) Genes & Dev , vol.9 , pp. 1411-1424
    • Kiss, T.1    Filipowicz, W.2
  • 19
    • 0030749116 scopus 로고    scopus 로고
    • Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs
    • Leader DJ, Clark GP, Watters J, Beven AF, Shaw PJ, Brown JW. 1997. Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs. EMBO J 16:5742-5751.
    • (1997) EMBO J , vol.16 , pp. 5742-5751
    • Leader, D.J.1    Clark, G.P.2    Watters, J.3    Beven, A.F.4    Shaw, P.J.5    Brown, J.W.6
  • 20
    • 0028641155 scopus 로고
    • Molecular characterisation of plant U14 small nucleolar RNA genes: Closely linked genes are transcribed as polycistronic U14 transcripts
    • Leader DJ, Sanders JF, Waugh R, Shaw P, Brown JW. 1994. Molecular characterisation of plant U14 small nucleolar RNA genes: Closely linked genes are transcribed as polycistronic U14 transcripts. Nucleic Acids Res 22:5196-5203.
    • (1994) Nucleic Acids Res , vol.22 , pp. 5196-5203
    • Leader, D.J.1    Sanders, J.F.2    Waugh, R.3    Shaw, P.4    Brown, J.W.5
  • 21
    • 0028949935 scopus 로고
    • Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA
    • Maden BE, Corbett ME, Heeney PA, Pugh K, Ajuh PM. 1995. Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA. Biochimie 77:22-29.
    • (1995) Biochimie , vol.77 , pp. 22-29
    • Maden, B.E.1    Corbett, M.E.2    Heeney, P.A.3    Pugh, K.4    Ajuh, P.M.5
  • 23
    • 0027382204 scopus 로고
    • Transposition of group II intron al1 in yeast and invasion of mitochondrial genes at new locations
    • Mueller MW, Allmaier M, Eskes R, Schweyen RJ. 1993. Transposition of group II intron al1 in yeast and invasion of mitochondrial genes at new locations. Nature 366:174-176.
    • (1993) Nature , vol.366 , pp. 174-176
    • Mueller, M.W.1    Allmaier, M.2    Eskes, R.3    Schweyen, R.J.4
  • 25
    • 0031053705 scopus 로고    scopus 로고
    • Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation
    • Nam K, Lee G, Trambley J, Devine SE, Boeke JD. 1997. Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation. Mol Cell Biol 17:809-818.
    • (1997) Mol Cell Biol , vol.17 , pp. 809-818
    • Nam, K.1    Lee, G.2    Trambley, J.3    Devine, S.E.4    Boeke, J.D.5
  • 26
    • 0030771087 scopus 로고    scopus 로고
    • Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
    • Ni J, Tien AL, Fournier MJ. 1997. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89:565-573.
    • (1997) Cell , vol.89 , pp. 565-573
    • Ni, J.1    Tien, A.L.2    Fournier, M.J.3
  • 27
    • 0026600972 scopus 로고
    • Human p53 and CDC2Hs genes combine to inhibit the proliferation of Saccharomyces cerevisiae
    • Nigro JM, Sikorski R, Reed SI, Vogelstein B. 1992. Human p53 and CDC2Hs genes combine to inhibit the proliferation of Saccharomyces cerevisiae. Mol Cell Biol 12:1357-1365.
    • (1992) Mol Cell Biol , vol.12 , pp. 1357-1365
    • Nigro, J.M.1    Sikorski, R.2    Reed, S.I.3    Vogelstein, B.4
  • 28
    • 0031935899 scopus 로고    scopus 로고
    • Processing of the precursors to small nucleolar RNAs and rRNAs requires common components
    • Petfalski E, Dandekar T, Henry Y, Tollervey D. 1998. Processing of the precursors to small nucleolar RNAs and rRNAs requires common components. Mol Cell Biol 18:1181-1189.
    • (1998) Mol Cell Biol , vol.18 , pp. 1181-1189
    • Petfalski, E.1    Dandekar, T.2    Henry, Y.3    Tollervey, D.4
  • 29
    • 0026352539 scopus 로고
    • Splicing of retrotransposon insertions from transcripts of the Drosophila melanogaster vermilion gene in a revertant
    • Pret AM, Searles LL. 1991. Splicing of retrotransposon insertions from transcripts of the Drosophila melanogaster vermilion gene in a revertant. Genetics 129:1137-1145.
    • (1991) Genetics , vol.129 , pp. 1137-1145
    • Pret, A.M.1    Searles, L.L.2
  • 31
    • 0027724686 scopus 로고
    • Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes
    • Prislei S, Michienzi A, Presutti C, Fragapane P, Bozzoni I. 1993. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. Nucleic Acids Res 21:5824-5830.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5824-5830
    • Prislei, S.1    Michienzi, A.2    Presutti, C.3    Fragapane, P.4    Bozzoni, I.5
  • 33
    • 0032125707 scopus 로고    scopus 로고
    • The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization
    • Samarksy DA, Fournier MJ, Singer RH, Bertrand E. 1998. The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization. EMBO J 17:3747-3757.
    • (1998) EMBO J , vol.17 , pp. 3747-3757
    • Samarksy, D.A.1    Fournier, M.J.2    Singer, R.H.3    Bertrand, E.4
  • 34
    • 0024799254 scopus 로고
    • High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier
    • Schiestl RH, Gietz RD. 1989. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr Genet 16:339-346.
    • (1989) Curr Genet , vol.16 , pp. 339-346
    • Schiestl, R.H.1    Gietz, R.D.2
  • 35
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • Sikorski RS, Hieter P. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
    • (1989) Genetics , vol.122 , pp. 19-27
    • Sikorski, R.S.1    Hieter, P.2
  • 36
    • 0030656387 scopus 로고    scopus 로고
    • Sno storm in the nucleolus: New roles for myriad small RNPs
    • Smith CM, Steitz JA. 1997. Sno storm in the nucleolus: New roles for myriad small RNPs. Cell 89:669-672.
    • (1997) Cell , vol.89 , pp. 669-672
    • Smith, C.M.1    Steitz, J.A.2
  • 37
    • 0009359622 scopus 로고
    • Expression of a beta-galactosidase gene containing the ribosomal protein 51 intron is sensitive to the rna2 mutation of yeast
    • Teem JL, Rosbash M. 1983. Expression of a beta-galactosidase gene containing the ribosomal protein 51 intron is sensitive to the rna2 mutation of yeast. Proc Natl Acad Sci USA 80:4403-4407.
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 4403-4407
    • Teem, J.L.1    Rosbash, M.2
  • 38
    • 0030963268 scopus 로고    scopus 로고
    • Function and synthesis of small nucleolar RNAs
    • Tollervey D, Kiss T. 1997. Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol 9:337-342.
    • (1997) Curr Opin Cell Biol , vol.9 , pp. 337-342
    • Tollervey, D.1    Kiss, T.2
  • 39
    • 0030033546 scopus 로고    scopus 로고
    • A mammalian gene with introns instead of exons generating stable RNA products
    • Tycowski KT, Shu MD, Steitz JA. 1996a. A mammalian gene with introns instead of exons generating stable RNA products. Nature 379:464-466.
    • (1996) Nature , vol.379 , pp. 464-466
    • Tycowski, K.T.1    Shu, M.D.2    Steitz, J.A.3
  • 40
    • 0029855867 scopus 로고    scopus 로고
    • A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus
    • Tycowski KT, Smith CM, Shu MD, Steitz JA. 1996b. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. Proc Natl Acad Sci USA 93:14480-11485.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 14480-111485
    • Tycowski, K.T.1    Smith, C.M.2    Shu, M.D.3    Steitz, J.A.4
  • 41
    • 0028676232 scopus 로고
    • New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae
    • Wach A, Brachat A, Pohlmann R, Philippsen P. 1994. New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10:1793-1808.
    • (1994) Yeast , vol.10 , pp. 1793-1808
    • Wach, A.1    Brachat, A.2    Pohlmann, R.3    Philippsen, P.4
  • 42
    • 0029805781 scopus 로고    scopus 로고
    • Elements essential for processing intronic U14 snoRNA are located at the termini of the mature snoRNA sequence and include conserved nucleotide boxes C and D
    • Watkins NJ, Leverette RD, Xia L, Andrews MT, Maxwell ES. 1996. Elements essential for processing intronic U14 snoRNA are located at the termini of the mature snoRNA sequence and include conserved nucleotide boxes C and D. RNA 2:118-133.
    • (1996) RNA , vol.2 , pp. 118-133
    • Watkins, N.J.1    Leverette, R.D.2    Xia, L.3    Andrews, M.T.4    Maxwell, E.S.5
  • 43
    • 0028859580 scopus 로고
    • A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility
    • Zimmerly S, Guo H, Eskes R, Yang J, Perlman PS, Lambowitz AM. 1995a. A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility. Cell 83:529-538.
    • (1995) Cell , vol.83 , pp. 529-538
    • Zimmerly, S.1    Guo, H.2    Eskes, R.3    Yang, J.4    Perlman, P.S.5    Lambowitz, A.M.6
  • 44
    • 0029162089 scopus 로고
    • Group II intron mobility occurs by target DNA-primed reverse transcription
    • Zimmerly S, Guo H, Perlman PS, Lambowitz AM. 1995b. Group II intron mobility occurs by target DNA-primed reverse transcription. Cell 82:545-554.
    • (1995) Cell , vol.82 , pp. 545-554
    • Zimmerly, S.1    Guo, H.2    Perlman, P.S.3    Lambowitz, A.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.