Multilocus variable number tandem repeat analysis for Salmonella enterica subspecies

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 30, Issue 4, 2011, Pages 465-473

  Kruy, S L ^a   Van Cuyck, H ^b   Koeck, J L ^b  

^a INSTITUT PASTEUR DU CAMBODGE   (Cambodia)

^b HÔPITAL D'INSTRUCTION DES ARMÉES ROBERT PICQUÉ   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DNA SEQUENCE; GENETIC MARKER; GENETIC POLYMORPHISM; GENOTYPE; MOLECULAR EPIDEMIOLOGY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PRIORITY JOURNAL; REVIEW; SALMONELLA ENTERICA; SEROTYPE; VALIDATION PROCESS; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; BACTERIAL TYPING TECHNIQUES; ENVIRONMENTAL MICROBIOLOGY; FOOD MICROBIOLOGY; GENOTYPE; HUMANS; MINISATELLITE REPEATS; POLYMORPHISM, GENETIC; SALMONELLA ENTERICA; SALMONELLA INFECTIONS; SPECIES SPECIFICITY;

EID: 79956006187     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-010-1110-0     Document Type: Review

References (31)

1. Euzéby JP (2005) Salmonella nomenclature. Available online at: http://www.bacterio.cict.fr/salmonellanom.html
2. Popoff MY, Bockemühl J, Gheesling LL (2004) Supplement 2002 (no. 46) to the Kauffmann-White scheme. Res Microbiol 155:568-570
3. Popoff MY (2001) Antigenic formulas of the Salmonella serovars, 8th edn. WHO Collaborating Centre for Reference and Research on Salmonella. Institut Pasteur, 28 rue du Dr Roux, 75724, Paris Cedex 15, France
4. Hammerschmidt S,Müller A, Sillmann H et al (1996) Capsule phase variation in Neisseria meningitidis serogroup B by slipped-strand mispairing in the polysialyltransferase gene (siaD): correlation with bacterial invasion and the outbreak of meningococcal disease. Mol Microbiol 20:1211-1220 (Pubitemid 26225429)
5. Jordan P, Snyder LA, Saunders NJ (2003) Diversity in coding tandem repeats in related Neisseria spp. BMC Microbiol 3:23
6. Le Flèche P, Hauck Y, Onteniente L et al (2001) A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol 1:2
7. Lindstedt BA, Heir E, Gjernes E et al (2003) DNA fingerprinting of Shiga-toxin producing Escherichia coli O157 based on Multiple-Locus Variable-Number Tandem-Repeats Analysis (MLVA). Ann Clin Microbiol Antimicrob 2:12
8. van Belkum A, Scherer S, van Leeuwen W et al (1997) Variable number of tandem repeats in clinical strains of Haemophilus influenzae. Infect Immun 65:5017-5027 (Pubitemid 27513545)
9. Pourcel C, Vidgop Y, Ramisse F et al (2003) Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping. J Clin Microbiol 41:1819-1826 (Pubitemid 36576497)
10. Skuce RA, McCorry TP, McCarroll JF et al (2002) Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets. Microbiology 148:519-528 (Pubitemid 34162794)
11. Liao JC, Li CC, Chiou CS (2006) Use of a multilocus variable-number tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates. BMC Microbiol 6:44
12. Sabat A, Malachowa N, Miedzobrodzki J et al (2006) Comparison of PCR-based methods for typing Staphylococcus aureus isolates. J Clin Microbiol 44:3804-3807 (Pubitemid 46768792)
13. Koeck JL, Njanpop-Lafourcade BM, Cade S et al (2005) Evaluation and selection of tandem repeat loci for Streptococcus pneumoniae MLVA strain typing. BMC Microbiol 5:66
14. Lindstedt BA, Heir E, Gjernes E et al (2003) DNA fingerprinting of Salmonella enterica subsp enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J Clin Microbiol 41:1469-1479 (Pubitemid 36428091)
15. Ramisse V, Houssu P, Hernandez E et al (2004) Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes. J Clin Microbiol 42:5722-5730 (Pubitemid 39664359)
16. Lindstedt BA, Vardund T, Aas L et al (2004)Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J Microbiol Methods 59:163-172 (Pubitemid 39348775)
17. Liu Y, Lee MA, Ooi EE et al (2003) Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable number tandem repeats. J Clin Microbiol 41:4388-4394 (Pubitemid 37099712)
18. Boxrud D, Pederson-Gulrud K, Wotton J et al (2007) Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J Clin Microbiol 45:536-543
19. Malorny B, Junker E, Helmuth R (2008) Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis. BMC Microbiol 8:84
20. Torpdahl M, Sørensen G, Ethelberg S et al (2006) A regional outbreak of Salmonella Typhimurium in Denmark and identification of the source using MLVA typing. Euro Surveill 11:134-136
21. Hopkins KL, Maguire C, Best E et al (2007) Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium. J Clin Microbiol 45:3058-3061 (Pubitemid 47417355)
22. Yazdankhah SP, Lindstedt BA (2007) Variable number tandem repeat typing of bacteria. Methods Mol Biol 396:395-405 (Pubitemid 350190054)
23. Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573-580
24. Denoeud F, Vergnaud G (2004) Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource. BMC Bioinform 5:4
25. Witonski D, Stefanova R, Ranganathan A et al (2006) Variable-number tandem repeats that are useful in genotyping isolates of Salmonella enterica subsp. enterica serovars Typhimurium and Newport. J Clin Microbiol 44:3849-3854 (Pubitemid 44737218)
26. Davis MA, Baker KNK, Call DR et al (2009) Multilocus variable-number tandem-repeat method for typing Salmonella enterica serovar Newport. J Clin Microbiol 47:1934-1938
27. Octavia S, Lan R (2009) Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi. J Clin Microbiol 47:2369-2376
28. Gilbert GL (2008) Using MLVA to type strains of Salmonella Typhimurium in New South Wales. NSW Public Health Bull 19:29-31
29. Lindstedt BA, Torpdahl M, Nielsen EM et al (2007) Harmonization of the multiple-locus variable-number tandem repeat analysis method between Denmark and Norway for typing Salmonella Typhimurium isolates and closer examination of the VNTR loci. J Appl Microbiol 102:728-735
30. Larsson JT, Torpdahl M, Petersen RF et al (2009) Development of a new nomenclature for Salmonella Typhimurium multilocus variable number of tandem repeats analysis (MLVA). Euro Surveill 14:1-5
31. Vergnaud G, Pourcel C (2009) Multiple locus variable number of tandem repeats analysis. Methods Mol Biol 551:141-158