-
1
-
-
1942435249
-
Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs
-
Bartel DP, Chen CZ, (2004) Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet 5: 396-400.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.Z.2
-
2
-
-
29144505309
-
The widespread impact of mammalian MicroRNAs on mRNA repression and evolution
-
Farh KK, Grimson A, Jan C, Lewis BP, Johnston WK, et al.(2005) The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science 310: 1817-1821.
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Farh, K.K.1
Grimson, A.2
Jan, C.3
Lewis, B.P.4
Johnston, W.K.5
-
3
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee RC, Feinbaum RL, Ambros V, (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
4
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, et al.(2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
-
5
-
-
0027730383
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
-
Wightman B, Ha I, Ruvkun G, (1993) Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862.
-
(1993)
Cell
, vol.75
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
6
-
-
24644446398
-
Ribo-gnome: the big world of small RNAs
-
Zamore PD, Haley B, (2005) Ribo-gnome: the big world of small RNAs. Science 309: 1519-1524.
-
(2005)
Science
, vol.309
, pp. 1519-1524
-
-
Zamore, P.D.1
Haley, B.2
-
7
-
-
0038708326
-
The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs
-
Abrahante JE, Daul AL, Li M, Volk ML, Tennessen JM, et al.(2003) The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs. Dev Cell 4: 625-637.
-
(2003)
Dev Cell
, vol.4
, pp. 625-637
-
-
Abrahante, J.E.1
Daul, A.L.2
Li, M.3
Volk, M.L.4
Tennessen, J.M.5
-
8
-
-
23944514849
-
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
-
Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, et al.(2005) Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122: 553-563.
-
(2005)
Cell
, vol.122
, pp. 553-563
-
-
Bagga, S.1
Bracht, J.2
Hunter, S.3
Massirer, K.4
Holtz, J.5
-
9
-
-
31744432337
-
The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
-
Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, et al.(2006) The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 38: 228-233.
-
(2006)
Nat Genet
, vol.38
, pp. 228-233
-
-
Chen, J.F.1
Mandel, E.M.2
Thomson, J.M.3
Wu, Q.4
Callis, T.E.5
-
10
-
-
20444467290
-
A microRNA polycistron as a potential human oncogene
-
He L, Thomson JM, Hemann MT, Hernando-Monge E, Mu D, et al.(2005) A microRNA polycistron as a potential human oncogene. Nature 435: 828-833.
-
(2005)
Nature
, vol.435
, pp. 828-833
-
-
He, L.1
Thomson, J.M.2
Hemann, M.T.3
Hernando-Monge, E.4
Mu, D.5
-
11
-
-
20044395613
-
RAS is regulated by the let-7 microRNA family
-
Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, et al.(2005) RAS is regulated by the let-7 microRNA family. Cell 120: 635-647.
-
(2005)
Cell
, vol.120
, pp. 635-647
-
-
Johnson, S.M.1
Grosshans, H.2
Shingara, J.3
Byrom, M.4
Jarvis, R.5
-
12
-
-
20444479428
-
c-Myc-regulated microRNAs modulate E2F1 expression
-
O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT, (2005) c-Myc-regulated microRNAs modulate E2F1 expression. Nature 435: 839-843.
-
(2005)
Nature
, vol.435
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
Dang, C.V.4
Mendell, J.T.5
-
13
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, et al.(2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
-
14
-
-
22444437609
-
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
-
Zhao Y, Samal E, Srivastava D, (2005) Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 436: 214-220.
-
(2005)
Nature
, vol.436
, pp. 214-220
-
-
Zhao, Y.1
Samal, E.2
Srivastava, D.3
-
15
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
Sood P, Krek A, Zavolan M, Macino G, Rajewsky N, (2006) Cell-type-specific signatures of microRNAs on target mRNA expression. Proc Natl Acad Sci U S A 103: 2746-2751.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2746-2751
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
16
-
-
28944439309
-
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
-
Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM, (2005) Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 123: 1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
17
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench JG, Sharp PA, (2004) Specificity of microRNA target selection in translational repression. Genes Dev 18: 504-511.
-
(2004)
Genes Dev
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
18
-
-
28044471565
-
MicroRNA functions in animal development and human disease
-
Alvarez-Garcia I, Miska EA, (2005) MicroRNA functions in animal development and human disease. Development 132: 4653-4662.
-
(2005)
Development
, vol.132
, pp. 4653-4662
-
-
Alvarez-Garcia, I.1
Miska, E.A.2
-
19
-
-
12144290519
-
Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers
-
Calin GA, Sevignani C, Dumitru CD, Hyslop T, Noch E, et al.(2004) Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci U S A 101: 2999-3004.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 2999-3004
-
-
Calin, G.A.1
Sevignani, C.2
Dumitru, C.D.3
Hyslop, T.4
Noch, E.5
-
20
-
-
1842831283
-
Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers
-
Kho AT, Zhao Q, Cai Z, Butte AJ, Kim JY, et al.(2004) Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers. Genes Dev 18: 629-640.
-
(2004)
Genes Dev
, vol.18
, pp. 629-640
-
-
Kho, A.T.1
Zhao, Q.2
Cai, Z.3
Butte, A.J.4
Kim, J.Y.5
-
21
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, et al.(2005) MicroRNA expression profiles classify human cancers. Nature 435: 834-838.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
-
22
-
-
33747334621
-
Extensive post-transcriptional regulation of microRNAs and its implications for cancer
-
Thomson JM, Newman M, Parker JS, Morin-Kensicki EM, Wright T, et al.(2006) Extensive post-transcriptional regulation of microRNAs and its implications for cancer. Genes Dev.
-
(2006)
Genes Dev
-
-
Thomson, J.M.1
Newman, M.2
Parker, J.S.3
Morin-Kensicki, E.M.4
Wright, T.5
-
23
-
-
13944283031
-
Microarray-based, high-throughput gene expression profiling of microRNAs
-
Nelson PT, Baldwin DA, Scearce LM, Oberholtzer JC, Tobias JW, et al.(2004) Microarray-based, high-throughput gene expression profiling of microRNAs. Nat Methods 1: 155-161.
-
(2004)
Nat Methods
, vol.1
, pp. 155-161
-
-
Nelson, P.T.1
Baldwin, D.A.2
Scearce, L.M.3
Oberholtzer, J.C.4
Tobias, J.W.5
-
24
-
-
33846905270
-
Maternally imprinted microRNAs are differentially expressed during mouse and human lung development
-
Williams AE, Moschos SA, Perry MM, Barnes PJ, Lindsay MA, (2007) Maternally imprinted microRNAs are differentially expressed during mouse and human lung development. Dev Dyn 236: 572-580.
-
(2007)
Dev Dyn
, vol.236
, pp. 572-580
-
-
Williams, A.E.1
Moschos, S.A.2
Perry, M.M.3
Barnes, P.J.4
Lindsay, M.A.5
-
25
-
-
0037117589
-
Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach
-
Zhao Q, Kho A, Kenney AM, Yuk Di DI, Kohane I, et al.(2002) Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach. Proc Natl Acad Sci U S A 99: 5704-5709.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 5704-5709
-
-
Zhao, Q.1
Kho, A.2
Kenney, A.M.3
Yuk Di, D.I.4
Kohane, I.5
-
26
-
-
0033774377
-
Lung morphogenesis revisited: old facts, current ideas
-
Cardoso WV, (2000) Lung morphogenesis revisited: old facts, current ideas. Dev Dyn 219: 121-130.
-
(2000)
Dev Dyn
, vol.219
, pp. 121-130
-
-
Cardoso, W.V.1
-
27
-
-
0036010519
-
Expression profiling of the developing mouse lung: insights into the establishment of the extracellular matrix
-
Mariani TJ, Reed JJ, Shapiro SD, (2002) Expression profiling of the developing mouse lung: insights into the establishment of the extracellular matrix. Am J Respir Cell Mol Biol 26: 541-548.
-
(2002)
Am J Respir Cell Mol Biol
, vol.26
, pp. 541-548
-
-
Mariani, T.J.1
Reed, J.J.2
Shapiro, S.D.3
-
28
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
29
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E, (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
-
(2007)
Nat Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
30
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, et al.(2005) Combinatorial microRNA target predictions. Nat Genet 37: 495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
-
31
-
-
0003631524
-
-
Sinauer Associates, INC. Publishers
-
Purves Dale, A GJ, Fitzpatrick David, Katz LawrenceC, Lamantia Anthony-Samuel, McNamara JamesO, eds. (1997) NeuroScience Sinauer Associates, INC. Publishers.
-
(1997)
NeuroScience
-
-
Purves Dale, A.G.J.1
David, F.2
Katz, L.C.3
Anthony-Samuel, L.4
McNamara, J.O.5
-
32
-
-
34250697605
-
MicroRNA expression profiles for the NCI-60 cancer cell panel
-
Blower PE, Verducci JS, Lin S, Zhou J, Chung JH, et al.(2007) MicroRNA expression profiles for the NCI-60 cancer cell panel. Mol Cancer Ther 6: 1483-1491.
-
(2007)
Mol Cancer Ther
, vol.6
, pp. 1483-1491
-
-
Blower, P.E.1
Verducci, J.S.2
Lin, S.3
Zhou, J.4
Chung, J.H.5
-
33
-
-
33847688917
-
Expression profile analysis of microRNA (miRNA) in mouse central nervous system using a new miRNA detection system that examines hybridization signals at every step of washing
-
Hohjoh H, Fukushima T, (2007) Expression profile analysis of microRNA (miRNA) in mouse central nervous system using a new miRNA detection system that examines hybridization signals at every step of washing. Gene 391: 39-44.
-
(2007)
Gene
, vol.391
, pp. 39-44
-
-
Hohjoh, H.1
Fukushima, T.2
-
34
-
-
28344438648
-
A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis
-
Fazi F, Rosa A, Fatica A, Gelmetti V, De Marchis ML, et al.(2005) A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell 123: 819-831.
-
(2005)
Cell
, vol.123
, pp. 819-831
-
-
Fazi, F.1
Rosa, A.2
Fatica, A.3
Gelmetti, V.4
De Marchis, M.L.5
-
35
-
-
14044251458
-
Human MicroRNA targets
-
doi:10.1371/journal.pbio.0020363
-
John B, Enright AJ, Aravin A, Tuschl T, Sander C, et al.(2004) Human MicroRNA targets. PLoS Biol 2: e363 doi:10.1371/journal.pbio.0020363.
-
(2004)
PLoS Biol
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
-
36
-
-
34547555796
-
Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network
-
doi:10.1371/journal.pcbi.0030131
-
Shalgi R, Lieber D, Oren M, Pilpel Y, (2007) Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network. PLoS Comput Biol 3: e131 doi:10.1371/journal.pcbi.0030131.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Shalgi, R.1
Lieber, D.2
Oren, M.3
Pilpel, Y.4
-
37
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, et al.(2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434: 338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
-
38
-
-
34249819336
-
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
Tsang J, Zhu J, van Oudenaarden A, (2007) MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol Cell 26: 753-767.
-
(2007)
Mol Cell
, vol.26
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
van Oudenaarden, A.3
-
39
-
-
33749389932
-
Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
-
Mortazavi A, Leeper Thompson EC, Garcia ST, Myers RM, Wold B, (2006) Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire. Genome Res 16: 1208-1221.
-
(2006)
Genome Res
, vol.16
, pp. 1208-1221
-
-
Mortazavi, A.1
Leeper Thompson, E.C.2
Garcia, S.T.3
Myers, R.M.4
Wold, B.5
-
40
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B, (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science 316: 1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
41
-
-
33847081733
-
Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
-
Janowski BA, Younger ST, Hardy DB, Ram R, Huffman KE, et al.(2007) Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nat Chem Biol 3: 166-173.
-
(2007)
Nat Chem Biol
, vol.3
, pp. 166-173
-
-
Janowski, B.A.1
Younger, S.T.2
Hardy, D.B.3
Ram, R.4
Huffman, K.E.5
-
42
-
-
33751251990
-
Small dsRNAs induce transcriptional activation in human cells
-
Li LC, Okino ST, Zhao H, Pookot D, Place RF, et al.(2006) Small dsRNAs induce transcriptional activation in human cells. Proc Natl Acad Sci U S A 103: 17337-17342.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17337-17342
-
-
Li, L.C.1
Okino, S.T.2
Zhao, H.3
Pookot, D.4
Place, R.F.5
-
43
-
-
34247107609
-
Abundance of microRNA target motifs in the 3′-UTRs of 20527 human genes
-
Iwama H, Masaki T, Kuriyama S, (2007) Abundance of microRNA target motifs in the 3′-UTRs of 20527 human genes. FEBS Lett 581: 1805-1810.
-
(2007)
FEBS Lett
, vol.581
, pp. 1805-1810
-
-
Iwama, H.1
Masaki, T.2
Kuriyama, S.3
-
44
-
-
34548607471
-
MicroRNA control of Nodal signalling
-
Martello G, Zacchigna L, Inui M, Montagner M, Adorno M, et al.(2007) MicroRNA control of Nodal signalling. Nature 449: 183-188.
-
(2007)
Nature
, vol.449
, pp. 183-188
-
-
Martello, G.1
Zacchigna, L.2
Inui, M.3
Montagner, M.4
Adorno, M.5
-
45
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villen J, Shin C, Camargo FD, Gygi SP, et al.(2008) The impact of microRNAs on protein output. Nature 455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
-
46
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, et al.(2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
-
47
-
-
26444608611
-
Discovering statistically significant pathways in expression profiling studies
-
Tian L, Greenberg SA, Kong SW, Altschuler J, Kohane IS, et al.(2005) Discovering statistically significant pathways in expression profiling studies. Proc Natl Acad Sci U S A 102: 13544-13549.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 13544-13549
-
-
Tian, L.1
Greenberg, S.A.2
Kong, S.W.3
Altschuler, J.4
Kohane, I.S.5
-
48
-
-
13444301473
-
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
-
Mignone F, Grillo G, Licciulli F, Iacono M, Liuni S, et al.(2005) UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res 33: D141-146.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mignone, F.1
Grillo, G.2
Licciulli, F.3
Iacono, M.4
Liuni, S.5
|