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Volumn 50, Issue 19, 2011, Pages 3913-3918

Strand invasion of mixed-sequence, double-helical B-DNA by γ-peptide nucleic acids containing g-clamp nucleobases under physiological conditions

Author keywords

[No Author keywords available]

Indexed keywords

BASE PAIRS; BINDING FREE ENERGY; DNA DOUBLE HELICES; DNA STRANDS; DOUBLE-HELICAL; LOW SALT CONCENTRATION; NO BINDING; NUCLEOBASES; PEPTIDE NUCLEIC ACID; PHYSIOLOGICAL CONDITION; PHYSIOLOGICAL IONIC STRENGTH; WATSON-CRICK BASE PAIRING;

EID: 79955861755     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi2002554     Document Type: Article
Times cited : (55)

References (36)
  • 1
    • 36849151531 scopus 로고
    • How the double helix breathes
    • Frank-Kamenetskii, M. D. (1987) How the double helix breathes Nature 328, 17-18
    • (1987) Nature , vol.328 , pp. 17-18
    • Frank-Kamenetskii, M.D.1
  • 3
    • 0023256126 scopus 로고
    • A single mode of DNA base-pair opening drives imino proton exchange
    • DOI 10.1038/328089a0
    • Gueron, M., Kochoyan, M., and Leroy, J.-L. (1987) A single mode of DNA base-pair opening drives imino proton exchange Nature 328, 89-92 (Pubitemid 17103590)
    • (1987) Nature , vol.328 , Issue.6125 , pp. 89-92
    • Gueron, M.1    Kochoyan, M.2    Leroy, J.-L.3
  • 4
    • 0024292414 scopus 로고
    • Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton
    • Leroy, J. L., Kochoyan, M., Huynh-Dinh, T., and Gueron, M. (1988) Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton J. Mol. Biol. 200, 223-238
    • (1988) J. Mol. Biol. , vol.200 , pp. 223-238
    • Leroy, J.L.1    Kochoyan, M.2    Huynh-Dinh, T.3    Gueron, M.4
  • 5
    • 0034830898 scopus 로고    scopus 로고
    • Molecular recognition of DNA by small molecules
    • DOI 10.1016/S0968-0896(01)00262-0, PII S0968089601002620
    • Dervan, P. B. (2001) Molecular recognition of DNA by small molecules Bioorg. Med. Chem. 9, 2215-2235 (Pubitemid 32834613)
    • (2001) Bioorganic and Medicinal Chemistry , vol.9 , Issue.9 , pp. 2215-2235
    • Dervan, P.B.1
  • 6
    • 33748577758 scopus 로고
    • Sequence-specific recognition and modification of double-helical DNA by oligonucleotides
    • Thuong, N. T. and Helene, C. (1993) Sequence-specific recognition and modification of double-helical DNA by oligonucleotides Angew. Chem., Int. Ed. 32, 666-690
    • (1993) Angew. Chem., Int. Ed. , vol.32 , pp. 666-690
    • Thuong, N.T.1    Helene, C.2
  • 7
    • 0031053362 scopus 로고    scopus 로고
    • A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
    • DOI 10.1126/science.275.5300.657
    • Greisman, H. A. and Pabo, C. O. (1997) A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites Science 275, 657-661 (Pubitemid 27061331)
    • (1997) Science , vol.275 , Issue.5300 , pp. 657-661
    • Greisman, H.A.1    Pabo, C.O.2
  • 8
    • 0026341239 scopus 로고
    • Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide
    • Nielsen, P. E., Egholm, M., Berg, R. H., and Buchardt, O. (1991) Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide Science 254, 1497-1500 (Pubitemid 21917487)
    • (1991) Science , vol.254 , Issue.5037 , pp. 1497-1500
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 9
    • 0032766821 scopus 로고    scopus 로고
    • Peptide nucleic acid. A molecule with two identities
    • Nielsen, P. E. (1999) Peptide nucleic acid. A molecule with two identities Acc. Chem. Res. 32, 624-630
    • (1999) Acc. Chem. Res. , vol.32 , pp. 624-630
    • Nielsen, P.E.1
  • 10
    • 0033577352 scopus 로고    scopus 로고
    • Rules for strand invasion by chemically modified oligonucleotides
    • Ishihara, T. and Corey, D. R. (1999) Rules for strand invasion by chemically modified oligonucleotides J. Am. Chem. Soc. 121, 2012-2020
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 2012-2020
    • Ishihara, T.1    Corey, D.R.2
  • 11
    • 0029963160 scopus 로고    scopus 로고
    • Strand displacement binding of a duplex-forming homopurine PNA to a homopyrimidine duplex DNA target
    • DOI 10.1021/ja953125q
    • Nielsen, P. E. and Christensen, L. (1996) Strand displacement binding of a duplex-forming homopurine PNA to a homopyrimidine duplex DNA target J. Am. Chem. Soc. 118, 2287-2288 (Pubitemid 26106360)
    • (1996) Journal of the American Chemical Society , vol.118 , Issue.9 , pp. 2287-2288
    • Nielsen, P.E.1    Christensen, L.2
  • 12
    • 84990238662 scopus 로고
    • Recognition of guanine and adenine in DNA by cytosine and thymine containing peptide nucleic acids (PNA)
    • Egholm, M., Nielsen, P. E., Buchardt, O., and Berg, R. H. (1992) Recognition of guanine and adenine in DNA by cytosine and thymine containing peptide nucleic acids (PNA) J. Am. Chem. Soc. 114, 9677-9678
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 9677-9678
    • Egholm, M.1    Nielsen, P.E.2    Buchardt, O.3    Berg, R.H.4
  • 13
    • 0030035244 scopus 로고    scopus 로고
    • Enhanced peptide nucleic acid binding to supercoiled DNA: Possible implications for DNA 'breathing' dynamics
    • DOI 10.1021/bi960436k
    • Bentin, T. and Nielsen, P. E. (1996) Enhanced peptide nucleic acid binding to supercoiled DNA: Possible implications for DNA "breathing" dynamics Biochemistry 35, 8863-8869 (Pubitemid 26243727)
    • (1996) Biochemistry , vol.35 , Issue.27 , pp. 8863-8869
    • Bentin, T.1    Nielsen, P.E.2
  • 14
    • 0034283848 scopus 로고    scopus 로고
    • Strand invasion by mixed base PNAs and a PNA-peptide chimera
    • Zhang, X., Ishihara, T., and Corey, D. R. (2000) Strand invasion by mixed base PNAs and a PNA-peptide chimera Nucleic Acids Res. 28, 3332-3338 (Pubitemid 30662298)
    • (2000) Nucleic Acids Research , vol.28 , Issue.17 , pp. 3332-3338
    • Zhang, X.1    Ishihara, T.2    Corey, D.R.3
  • 16
    • 0345445891 scopus 로고    scopus 로고
    • Combined Triplex/Duplex Invasion of Double-Stranded DNA by "Tail-Clamp" Peptide Nucleic Acid
    • DOI 10.1021/bi0351918
    • Bentin, T., Larsen, H. J., and Nielsen, P. E. (2003) Combined triplex/duplex invasion of double-stranded DNA by "tail-clamp" peptide nucleic acid Biochemistry 42, 13987-13995 (Pubitemid 37466624)
    • (2003) Biochemistry , vol.42 , Issue.47 , pp. 13987-13995
    • Bentin, T.1    Larsen, H.J.2    Nielsen, P.E.3
  • 17
    • 0345014787 scopus 로고    scopus 로고
    • Extending Recognition by Peptide Nucleic Acids (PNAs): Binding to Duplex DNA and Inhibition of Transcription by Tail-Clamp PNA-Peptide Conjugates
    • DOI 10.1021/bi035194k
    • Kaihatsu, K., Shah, R. H., Zhao, X., and Corey, D. R. (2003) Extending recognition by peptide nucleic acids (PNAs): Binding to duplex DNA and inhibition of transcription by tail-clamp PNA-peptide conjugate Biochemistry 42, 13996-14003 (Pubitemid 37466625)
    • (2003) Biochemistry , vol.42 , Issue.47 , pp. 13996-14003
    • Kaihatsu, K.1    Shah, R.H.2    Zhao, X.3    Corey, D.R.4
  • 18
    • 0032738421 scopus 로고    scopus 로고
    • Double duplex invasion by peptide nucleic acid: A general principle for sequence-specific targeting of double-stranded DNA
    • DOI 10.1073/pnas.96.21.11804
    • Lohse, J., Dahl, O., and Nielsen, P. E. (1999) Double duplex invasion by peptide nucleic acid: A general principle for sequence-specific targeting of double-stranded DNA Proc. Natl. Acad. Sci. U.S.A. 96, 11804-11808 (Pubitemid 29502813)
    • (1999) Proceedings of the National Academy of Sciences of the United States of America , vol.96 , Issue.21 , pp. 11804-11808
    • Lohse, J.1    Dahl, O.2    Nielsen, P.E.3
  • 19
    • 69349104918 scopus 로고    scopus 로고
    • Strand invasion of extended, mixed sequence B-DNA by γpNAs
    • He, G., Rapireddy, S., Bahal, R., Sahu, B., and Ly, D. H. (2009) Strand invasion of extended, mixed sequence B-DNA by γPNAs J. Am. Chem. Soc. 131, 12088-12090
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 12088-12090
    • He, G.1    Rapireddy, S.2    Bahal, R.3    Sahu, B.4    Ly, D.H.5
  • 20
    • 0037837659 scopus 로고    scopus 로고
    • Superior duplex DNA strand invasion by acridine conjugated peptide nucleic acids
    • DOI 10.1021/ja029936t
    • Bentin, T. and Nielsen, P. E. (2003) Superior duplex DNA strand invasion by acridine conjugated peptide nucleic acids J. Am. Chem. Soc. 125, 6378-6379 (Pubitemid 36605401)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.21 , pp. 6378-6379
    • Bentin, T.1    Nielsen, P.E.2
  • 22
    • 37849040469 scopus 로고    scopus 로고
    • Strand invasion of mixed-sequence B-DNA by acridine-linked, γ-peptide nucleic acid (γ-PNA)
    • Rapireddy, S., He, G., Roy, S., Armitage, B. A., and Ly, D. H. (2007) Strand invasion of mixed-sequence B-DNA by acridine-linked, γ-peptide nucleic acid (γ-PNA) J. Am. Chem. Soc. 129, 15596-15600
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 15596-15600
    • Rapireddy, S.1    He, G.2    Roy, S.3    Armitage, B.A.4    Ly, D.H.5
  • 23
    • 54349087593 scopus 로고    scopus 로고
    • A simple cytosine-to-G-clamp nucleobase substitution enables chiral γ-PNAs to invade mixed-sequence double helical B-form DNA
    • Chenna, V., Rapireddy, S., Sahu, B., Ausin, C., Pedroso, E., and Ly, D. H. (2008) A simple cytosine-to-G-clamp nucleobase substitution enables chiral γ-PNAs to invade mixed-sequence double helical B-form DNA ChemBioChem 9, 2388-2391
    • (2008) ChemBioChem , vol.9 , pp. 2388-2391
    • Chenna, V.1    Rapireddy, S.2    Sahu, B.3    Ausin, C.4    Pedroso, E.5    Ly, D.H.6
  • 26
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • DOI 10.1126/science.1068999
    • Brummelkamp, T. R., Bernards, R., and Agami, R. (2002) A system for stable expression of short interfering RNAs in mammalian cells Science 296, 550-553 (Pubitemid 34408678)
    • (2002) Science , vol.296 , Issue.5567 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 27
    • 35948965183 scopus 로고    scopus 로고
    • Binding affinities of oligonucleotides and PNAs containing phenoxazine and G-clamp cytosine analogues are unusually sequence dependent
    • Ortega, J.-A., Blas, J. R., Orozco, M., Grandas, A., Pedroso, E., and Robles, J. (2007) Binding affinities of oligonucleotides and PNAs containing phenoxazine and G-clamp cytosine analogues are unusually sequence dependent Org. Lett. 9, 4503-4506
    • (2007) Org. Lett. , vol.9 , pp. 4503-4506
    • Ortega, J.-A.1    Blas, J.R.2    Orozco, M.3    Grandas, A.4    Pedroso, E.5    Robles, J.6
  • 29
    • 0023057852 scopus 로고
    • Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate
    • Furlong, J. C. and Lilley, D. M. J. (1986) Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate Nucleic Acids Res. 14, 3995-4007
    • (1986) Nucleic Acids Res. , vol.14 , pp. 3995-4007
    • Furlong, J.C.1    Lilley, D.M.J.2
  • 31
    • 0037012360 scopus 로고    scopus 로고
    • Substituted 1,8-naphthyridin-2(1H)-ones are superior to thymine in the recognition of adenine in duplex as well as triplex structures
    • DOI 10.1021/ja0117027
    • Eldrup, A. B., Christensen, C., Haaima, G., and Nielsen, P. E. (2002) Substituted 1,8-naphthyridin-2(1H)-ones are superior to thymine in the recognition of adenine in duplex as well as triplex structure J. Am. Chem. Soc. 124, 3254-3262 (Pubitemid 34270364)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.13 , pp. 3254-3262
    • Eldrup, A.B.1    Christensen, C.2    Haaima, G.3    Nielsen, P.E.4
  • 32
    • 0025941284 scopus 로고
    • Sequence-selective DNA recognition by synthetic ligands
    • Nielsen, P. E. (1991) Sequence-selective DNA recognition by synthetic ligands Bioconjugate Chem. 2, 1-12
    • (1991) Bioconjugate Chem. , vol.2 , pp. 1-12
    • Nielsen, P.E.1
  • 33
    • 0027197574 scopus 로고
    • Oligonucleotide-directed triple-helix formation
    • Sun, J. S. and Helene, C. (1993) Oligonucleotide-directed triple-helix formation Curr. Opin. Struct. Biol. 3, 345-356 (Pubitemid 23207565)
    • (1993) Current Opinion in Structural Biology , vol.3 , Issue.3 , pp. 345-356
    • Sun, J.-S.1    Helene, C.2
  • 34
    • 0036168937 scopus 로고    scopus 로고
    • Engineering polydactyl zinc-finger transcription factors
    • DOI 10.1038/nbt0202-135
    • Beerli, R. R. and Barbas, C. F. I. (2002) Engineering polydactyl zinc-finger transcription factors Nat. Biotechnol. 20, 135-141 (Pubitemid 34158028)
    • (2002) Nature Biotechnology , vol.20 , Issue.2 , pp. 135-141
    • Beerli, R.R.1    Barbas III, C.F.2
  • 35
    • 1542364377 scopus 로고    scopus 로고
    • The design of functional DNA-binding proteins based on zinc finger domains
    • Jantz, D., Amann, B. T., Gatto, G. J., and Berg, J. M. (2004) The design of functional DNA-binding proteins based on zinc finger domains Chem. Rev. 104, 789-800
    • (2004) Chem. Rev. , vol.104 , pp. 789-800
    • Jantz, D.1    Amann, B.T.2    Gatto, G.J.3    Berg, J.M.4
  • 36
    • 0037711251 scopus 로고    scopus 로고
    • Drug discovery with engineered zinc-finger proteins
    • DOI 10.1038/nrd1087
    • Jamieson, A. C., Miller, J. C., and Pabo, C. O. (2003) Drug discovery with engineered zinc-finger proteins Nat. Rev. Drug Discovery 2, 361-368 (Pubitemid 37361706)
    • (2003) Nature Reviews Drug Discovery , vol.2 , Issue.5 , pp. 361-368
    • Jamieson, A.C.1    Miller, J.C.2    Pabo, C.O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.