메뉴 건너뛰기




Volumn 6, Issue 5, 2011, Pages

The E. coli anti-sigma factor Rsd: Studies on the specificity and regulation of its expression

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; RNA POLYMERASE; SIGMA FACTOR; SIGMA FACTOR RSD; UNCLASSIFIED DRUG; DEOXYRIBONUCLEASE I; DNA DIRECTED RNA POLYMERASE; ESCHERICHIA COLI PROTEIN; REPRESSOR PROTEIN; RNA POLYMERASE SIGMA 70; RSD PROTEIN, E COLI; SIGMA FACTOR KATF PROTEIN, BACTERIA;

EID: 79955804349     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0019235     Document Type: Article
Times cited : (20)

References (67)
  • 1
    • 0004268763 scopus 로고    scopus 로고
    • Bacterial stress responses
    • Washington D.C., ASM Press
    • Storz G, Hengge-Aronis R, (2000) Bacterial stress responses. Washington D.C. ASM Press.
    • (2000)
    • Storz, G.1    Hengge-Aronis, R.2
  • 2
    • 0027509821 scopus 로고
    • Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli
    • Hengge-Aronis R, (1993) Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli. Cell 72: 165-168.
    • (1993) Cell , vol.72 , pp. 165-168
    • Hengge-Aronis, R.1
  • 3
    • 42049122814 scopus 로고    scopus 로고
    • Regulation of bacterial RNA polymerase sigma factor activity: a structural perspective
    • Campbell EA, Westblade LF, Darst SA, (2008) Regulation of bacterial RNA polymerase sigma factor activity: a structural perspective. Curr Opin Microbiol 11: 121-127.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 121-127
    • Campbell, E.A.1    Westblade, L.F.2    Darst, S.A.3
  • 6
    • 0033765113 scopus 로고    scopus 로고
    • Functional modulation of Escherichia coli RNA polymerase
    • Ishihama A, (2000) Functional modulation of Escherichia coli RNA polymerase. Annu Rev Microbiol 54: 499-518.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 499-518
    • Ishihama, A.1
  • 7
    • 0028787734 scopus 로고
    • Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: Intracellular levels of σ70 and σ38
    • Jishage M, Ishihama A, (1995) Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: Intracellular levels of σ70 and σ38. J Bacteriol 177: 6832-6835.
    • (1995) J Bacteriol , vol.177 , pp. 6832-6835
    • Jishage, M.1    Ishihama, A.2
  • 8
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • Wassarman KM, Storz G, (2000) 6S RNA regulates E. coli RNA polymerase activity. Cell 101: 613-623.
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 9
    • 0032574843 scopus 로고    scopus 로고
    • A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase
    • Jishage M, Ishihama A, (1998) A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase. Proc Natl Aca Sci U S A 95: 4953-4958.
    • (1998) Proc Natl Aca Sci U S A , vol.95 , pp. 4953-4958
    • Jishage, M.1    Ishihama, A.2
  • 10
    • 40149091702 scopus 로고    scopus 로고
    • Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation
    • Neußer T, Gildehaus N, Wurm R, Wagner R, (2008) Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation. Biol Chem 389: 285-297.
    • (2008) Biol Chem , vol.389 , pp. 285-297
    • Neußer, T.1    Gildehaus, N.2    Wurm, R.3    Wagner, R.4
  • 11
    • 0032980156 scopus 로고    scopus 로고
    • Transcriptional organization and role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. J Bacteriol
    • Jishage M, Ishihama A, (1999) Transcriptional organization and role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. J Bacteriol 181: 3768-3776.
    • (1999) , vol.181 , pp. 3768-3776
    • Jishage, M.1    Ishihama, A.2
  • 12
    • 77949481723 scopus 로고    scopus 로고
    • Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
    • Neußer T, Polen T, Geißen R, Wagner R, (2010) Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery. BMC Genomics 11: 165-178.
    • (2010) BMC Genomics , vol.11 , pp. 165-178
    • Neußer, T.1    Polen, T.2    Geißen, R.3    Wagner, R.4
  • 13
    • 1242351231 scopus 로고    scopus 로고
    • Mass Spectrometry of Escherichia coli RNA Polymerase; Interactions of the Core Enzyme with sigma(70) and Rsd Protein
    • Ilag LL, Westblade LF, Deshayes C, Kolb A, Busby SJ, et al. (2004) Mass Spectrometry of Escherichia coli RNA Polymerase; Interactions of the Core Enzyme with sigma(70) and Rsd Protein. Structure (Camb) 12: 269-275.
    • (2004) Structure (Camb) , vol.12 , pp. 269-275
    • Ilag, L.L.1    Westblade, L.F.2    Deshayes, C.3    Kolb, A.4    Busby, S.J.5
  • 14
    • 72949106705 scopus 로고    scopus 로고
    • A global view of Escherichia coli Rsd protein and its interactions
    • Piper SE, Mitchell JE, Lee DJ, Busby SJ, (2009) A global view of Escherichia coli Rsd protein and its interactions. Mol Biosyst 5: 1943-1947.
    • (2009) Mol Biosyst , vol.5 , pp. 1943-1947
    • Piper, S.E.1    Mitchell, J.E.2    Lee, D.J.3    Busby, S.J.4
  • 15
    • 0016748261 scopus 로고
    • A procedure for the rapid, large scale purification of E. coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA cellulose chromatography
    • Burgess RR, Jendrisak JJ, (1975) A procedure for the rapid, large scale purification of E. coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA cellulose chromatography. Biochemistry 14: 4636-4638.
    • (1975) Biochemistry , vol.14 , pp. 4636-4638
    • Burgess, R.R.1    Jendrisak, J.J.2
  • 16
    • 0017684749 scopus 로고
    • A simple procedure for resolution of E. coli RNA polymerase holoenzyme from core polymerase
    • Gonzales N, Wiggs J, Chamberlin MJ, (1977) A simple procedure for resolution of E. coli RNA polymerase holoenzyme from core polymerase. Arch Biochem Biophys 182: 404-408.
    • (1977) Arch Biochem Biophys , vol.182 , pp. 404-408
    • Gonzales, N.1    Wiggs, J.2    Chamberlin, M.J.3
  • 17
    • 0026019420 scopus 로고
    • Identification of a subunit assembly domain in the alpha subunit of Escherichia coli RNA polymerase
    • Igarashi K, Fujita N, Ishihama A, (1991) Identification of a subunit assembly domain in the alpha subunit of Escherichia coli RNA polymerase. J Mol Biol 218: 1-6.
    • (1991) J Mol Biol , vol.218 , pp. 1-6
    • Igarashi, K.1    Fujita, N.2    Ishihama, A.3
  • 18
    • 0027744758 scopus 로고
    • Recombinant Escherichia coli RNA polymerase: purification of individually overexpressed subunits and in vitro assembly
    • Borukhov S, Goldfarb A, (1993) Recombinant Escherichia coli RNA polymerase: purification of individually overexpressed subunits and in vitro assembly. Protein expression and Purification 4: 503-511.
    • (1993) Protein Expression and Purification , vol.4 , pp. 503-511
    • Borukhov, S.1    Goldfarb, A.2
  • 19
    • 0027469990 scopus 로고
    • Heterogeneity of the principal s factor in Escherichia coli: the rpoS gene product, σ38, is a second principal s factor of RNA polymerase in stationary-phase Escherichia coli
    • Tanaka K, Takayanagi Y, Fujita N, Ishihama A, Takahashi H, (1993) Heterogeneity of the principal s factor in Escherichia coli: the rpoS gene product, σ38, is a second principal s factor of RNA polymerase in stationary-phase Escherichia coli. Proc Natl Acad Sci U S A 90: 3511-3515.
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 3511-3515
    • Tanaka, K.1    Takayanagi, Y.2    Fujita, N.3    Ishihama, A.4    Takahashi, H.5
  • 20
    • 26844454546 scopus 로고    scopus 로고
    • The seven E. coli ribosomal RNA operon upstream regulatory regions differ in structure and transcription factor binding efficiencies
    • Hillebrand A, Wurm R, Menzel A, Wagner R, (2005) The seven E. coli ribosomal RNA operon upstream regulatory regions differ in structure and transcription factor binding efficiencies. Biol Chem 386: 523-534.
    • (2005) Biol Chem , vol.386 , pp. 523-534
    • Hillebrand, A.1    Wurm, R.2    Menzel, A.3    Wagner, R.4
  • 21
    • 27444437323 scopus 로고    scopus 로고
    • LRP and H-NS - cooperative partners for transcription regulation at E. coli rRNA promoters
    • Pul Ü, Wurm R, Lux B, Meltzer M, Menzel A, et al. (2005) LRP and H-NS- cooperative partners for transcription regulation at E. coli rRNA promoters. Mol Microbiol 58: 864-876.
    • (2005) Mol Microbiol , vol.58 , pp. 864-876
    • Pul, Ü.1    Wurm, R.2    Lux, B.3    Meltzer, M.4    Menzel, A.5
  • 22
    • 0025049858 scopus 로고
    • The signal for growth rate control and stringent sensitivity in E. coli is not restricted to a particular sequence motif within the promoter region
    • Zacharias M, Göringer HU, Wagner R, (1990) The signal for growth rate control and stringent sensitivity in E. coli is not restricted to a particular sequence motif within the promoter region. Nucleic Acids Res 18: 6271-6275.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6271-6275
    • Zacharias, M.1    Göringer, H.U.2    Wagner, R.3
  • 23
    • 33846637687 scopus 로고    scopus 로고
    • The Role of LRP and H-NS in Transcription Regulation: Involvement of Synergism, Allostery and Macromolecular Crowding
    • Pul Ü, Wurm R, Wagner R, (2007) The Role of LRP and H-NS in Transcription Regulation: Involvement of Synergism, Allostery and Macromolecular Crowding. J Mol Biol 366: 900-915.
    • (2007) J Mol Biol , vol.366 , pp. 900-915
    • Pul, Ü.1    Wurm, R.2    Wagner, R.3
  • 24
    • 0018846636 scopus 로고
    • Sequencing end-labeled DNA with base-specific chemical cleavages
    • Maxam AM, Gilbert W, (1980) Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol 65: 499-560.
    • (1980) Methods Enzymol , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.2
  • 25
    • 77949398275 scopus 로고    scopus 로고
    • Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS
    • Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, et al. (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 75: 1495-1512.
    • (2010) Mol Microbiol , vol.75 , pp. 1495-1512
    • Pul, U.1    Wurm, R.2    Arslan, Z.3    Geissen, R.4    Hofmann, N.5
  • 26
    • 0037053370 scopus 로고    scopus 로고
    • Pre-existing distortions in nucleic acid structure aid polypurine tract selection by HIV-1 reverse transcriptase
    • Kvaratskhelia M, Budihas SR, Le Grice SF, (2002) Pre-existing distortions in nucleic acid structure aid polypurine tract selection by HIV-1 reverse transcriptase. J Biol Chem 277: 16689-16696.
    • (2002) J Biol Chem , vol.277 , pp. 16689-16696
    • Kvaratskhelia, M.1    Budihas, S.R.2    Le Grice, S.F.3
  • 27
    • 0035798615 scopus 로고    scopus 로고
    • Conserved regions 4.1 and 4.2 of sigma(70) constitute the recognition sites for the anti-sigma factor AsiA, and AsiA is a dimer free in solution
    • Urbauer JL, Adelman K, Urbauer RJ, Simeonov MF, Gilmore JM, et al. (2001) Conserved regions 4.1 and 4.2 of sigma(70) constitute the recognition sites for the anti-sigma factor AsiA, and AsiA is a dimer free in solution. J Biol Chem 276: 41128-41132.
    • (2001) J Biol Chem , vol.276 , pp. 41128-41132
    • Urbauer, J.L.1    Adelman, K.2    Urbauer, R.J.3    Simeonov, M.F.4    Gilmore, J.M.5
  • 28
    • 0037459112 scopus 로고    scopus 로고
    • Interaction of T4 AsiA with its target sites in the RNA polymerase sigma70 subunit leads to distinct and opposite effects on transcription
    • Minakhin L, Niedziela-Majka A, Kuznedelov K, Adelman K, Urbauer JL, et al. (2003) Interaction of T4 AsiA with its target sites in the RNA polymerase sigma70 subunit leads to distinct and opposite effects on transcription. J Mol Biol 326: 679-690.
    • (2003) J Mol Biol , vol.326 , pp. 679-690
    • Minakhin, L.1    Niedziela-Majka, A.2    Kuznedelov, K.3    Adelman, K.4    Urbauer, J.L.5
  • 29
    • 34247633645 scopus 로고    scopus 로고
    • The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70
    • Mitchell JE, Oshima T, Piper SE, Webster CL, Westblade LF, et al. (2007) The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70. J Bacteriol 189: 3489-3495.
    • (2007) J Bacteriol , vol.189 , pp. 3489-3495
    • Mitchell, J.E.1    Oshima, T.2    Piper, S.E.3    Webster, C.L.4    Westblade, L.F.5
  • 30
    • 0037133152 scopus 로고    scopus 로고
    • Solution structure and stability of the anti-sigma factor AsiA: implications for novel functions
    • Urbauer JL, Simeonov MF, Urbauer RJ, Adelman K, Gilmore JM, et al. (2002) Solution structure and stability of the anti-sigma factor AsiA: implications for novel functions. Proc Natl Acad Sci U S A 99: 1831-1835.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 1831-1835
    • Urbauer, J.L.1    Simeonov, M.F.2    Urbauer, R.J.3    Adelman, K.4    Gilmore, J.M.5
  • 31
    • 9244259110 scopus 로고    scopus 로고
    • A family of anti-sigma70 proteins in T4-type phages and bacteria that are similar to AsiA, a Transcription inhibitor and co-activator of bacteriophage T4
    • Pineda M, Gregory BD, Szczypinski B, Baxter KR, Hochschild A, et al. (2004) A family of anti-sigma70 proteins in T4-type phages and bacteria that are similar to AsiA, a Transcription inhibitor and co-activator of bacteriophage T4. J Mol Biol 344: 1183-1197.
    • (2004) J Mol Biol , vol.344 , pp. 1183-1197
    • Pineda, M.1    Gregory, B.D.2    Szczypinski, B.3    Baxter, K.R.4    Hochschild, A.5
  • 32
    • 8544232750 scopus 로고    scopus 로고
    • Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?
    • Nystrom T, (2004) Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition? Mol Microbiol 54: 855-862.
    • (2004) Mol Microbiol , vol.54 , pp. 855-862
    • Nystrom, T.1
  • 33
    • 33645771210 scopus 로고    scopus 로고
    • Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA
    • Grigorova IL, Phleger NJ, Mutalik VK, Gross CA, (2006) Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA. Proc Natl Acad Sci U S A 103: 5332-5337.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 5332-5337
    • Grigorova, I.L.1    Phleger, N.J.2    Mutalik, V.K.3    Gross, C.A.4
  • 34
    • 58849139777 scopus 로고    scopus 로고
    • Allosteric control of Escherichia coli rRNA promoter complexes by DksA
    • Rutherford ST, Villers CL, Lee JH, Ross W, Gourse RL, (2009) Allosteric control of Escherichia coli rRNA promoter complexes by DksA. Genes Dev 23: 236-248.
    • (2009) Genes Dev , vol.23 , pp. 236-248
    • Rutherford, S.T.1    Villers, C.L.2    Lee, J.H.3    Ross, W.4    Gourse, R.L.5
  • 35
    • 0000432993 scopus 로고
    • The selective degradation of pyrimidines in nucleic acids by permanganate oxidation
    • Hayatsu H, Ukita T, (1967) The selective degradation of pyrimidines in nucleic acids by permanganate oxidation. Biochem Biophys Res Commun 29: 556-561.
    • (1967) Biochem Biophys Res Commun , vol.29 , pp. 556-561
    • Hayatsu, H.1    Ukita, T.2
  • 36
    • 0031033657 scopus 로고    scopus 로고
    • Comparative analysis of the interaction of Escherichia coli σs and σ70 RNA polymerase holoenzyme with the stationary-phase-specific bolAp1 promoter
    • Nguyen LH, Burgess RR, (1997) Comparative analysis of the interaction of Escherichia coli σs and σ70 RNA polymerase holoenzyme with the stationary-phase-specific bolAp1 promoter. Biochemistry 36: 1748-1754.
    • (1997) Biochemistry , vol.36 , pp. 1748-1754
    • Nguyen, L.H.1    Burgess, R.R.2
  • 37
    • 60649108870 scopus 로고    scopus 로고
    • Nucleoid-associated proteins and bacterial physiology
    • Dorman CJ, (2009) Nucleoid-associated proteins and bacterial physiology. Adv Appl Microbiol 67: 47-64.
    • (2009) Adv Appl Microbiol , vol.67 , pp. 47-64
    • Dorman, C.J.1
  • 38
    • 0036041669 scopus 로고    scopus 로고
    • Leucine-induced dissociation of Escherichia coli Lrp hexadecamers to octamers
    • Chen S, Calvo JM, (2002) Leucine-induced dissociation of Escherichia coli Lrp hexadecamers to octamers. J Mol Biol 318: 1031-1042.
    • (2002) J Mol Biol , vol.318 , pp. 1031-1042
    • Chen, S.1    Calvo, J.M.2
  • 39
    • 34247628510 scopus 로고    scopus 로고
    • H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing
    • Bouffartigues E, Buckle M, Badaut C, Travers A, Rimsky S, (2007) H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing. Nat Struct Mol Biol 14: 441-448.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 441-448
    • Bouffartigues, E.1    Buckle, M.2    Badaut, C.3    Travers, A.4    Rimsky, S.5
  • 41
    • 0028200974 scopus 로고
    • Leucine-responsive regulatory protein and deoxyadenosine methylase control the phase variation and expression of the sfa and daa pili operons in Escherichia coli
    • van der Woude MW, Low DA, (1994) Leucine-responsive regulatory protein and deoxyadenosine methylase control the phase variation and expression of the sfa and daa pili operons in Escherichia coli. Mol Microbiol 11: 605-618.
    • (1994) Mol Microbiol , vol.11 , pp. 605-618
    • van der Woude, M.W.1    Low, D.A.2
  • 42
    • 0036366541 scopus 로고    scopus 로고
    • Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli
    • Oshima T, Wada C, Kawagoe Y, Ara T, Maeda M, et al. (2002) Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Mol Microbiol 45: 673-695.
    • (2002) Mol Microbiol , vol.45 , pp. 673-695
    • Oshima, T.1    Wada, C.2    Kawagoe, Y.3    Ara, T.4    Maeda, M.5
  • 43
    • 0025769253 scopus 로고
    • The role of the 'gearbox' in the transcription of essential genes
    • Vicente M, Kushner SR, Garrido T, Aldea M, (1991) The role of the 'gearbox' in the transcription of essential genes. Mol Microbiol 5: 2085-2091.
    • (1991) Mol Microbiol , vol.5 , pp. 2085-2091
    • Vicente, M.1    Kushner, S.R.2    Garrido, T.3    Aldea, M.4
  • 44
    • 4043108470 scopus 로고    scopus 로고
    • Regulation through the secondary channel-Structural framework for ppGpp-DksA synergism during transcription
    • Perederina A, Svetlov V, Vassylyiva MN, Tahirov TH, Ykoyama S, et al. (2004) Regulation through the secondary channel-Structural framework for ppGpp-DksA synergism during transcription. Cell 118: 297-309.
    • (2004) Cell , vol.118 , pp. 297-309
    • Perederina, A.1    Svetlov, V.2    Vassylyiva, M.N.3    Tahirov, T.H.4    Ykoyama, S.5
  • 45
    • 78649389733 scopus 로고    scopus 로고
    • E. coli 6SRNA: a universal transcriptional regulator within the centre of growth adaptation
    • Geißen R, Steuten B, Polen T, Wagner R, (2010) E. coli 6SRNA: a universal transcriptional regulator within the centre of growth adaptation. RNA Biology 7: 564-568.
    • (2010) RNA Biology , vol.7 , pp. 564-568
    • Geißen, R.1    Steuten, B.2    Polen, T.3    Wagner, R.4
  • 46
    • 34548348934 scopus 로고    scopus 로고
    • 6S RNA: a regulator of transcription
    • Wassarman KM, (2007) 6S RNA: a regulator of transcription. Mol Microbiol 65: 1425-1431.
    • (2007) Mol Microbiol , vol.65 , pp. 1425-1431
    • Wassarman, K.M.1
  • 47
    • 77955152087 scopus 로고    scopus 로고
    • Transcriptional switching in Escherichia coli during stress and starvation by modulation of sigma activity
    • Sharma UK, Chatterji D, (2010) Transcriptional switching in Escherichia coli during stress and starvation by modulation of sigma activity. FEMS Microbiol Rev 34: 646-657.
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 646-657
    • Sharma, U.K.1    Chatterji, D.2
  • 48
    • 3242807381 scopus 로고    scopus 로고
    • 6S RNA function enhances long-term cell survival
    • Trotochaud AE, Wassarman KM, (2004) 6S RNA function enhances long-term cell survival. J Bacteriol 186: 4978-4985.
    • (2004) J Bacteriol , vol.186 , pp. 4978-4985
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 49
    • 3242697144 scopus 로고    scopus 로고
    • Factors influencing preferential utilization of RNA polymerase containing sigma-38 in stationary-phase gene expression in Escherichia coli
    • Kim EY, Shin MS, Rhee JH, Choy HE, (2004) Factors influencing preferential utilization of RNA polymerase containing sigma-38 in stationary-phase gene expression in Escherichia coli. J Microbiol 42: 103-110.
    • (2004) J Microbiol , vol.42 , pp. 103-110
    • Kim, E.Y.1    Shin, M.S.2    Rhee, J.H.3    Choy, H.E.4
  • 50
    • 0030774848 scopus 로고    scopus 로고
    • The interaction between the AsiA protein of bacteriophage T4 and the σ70 subunit of Escherichia coli RNA polymerase
    • Adelman K, Orsini G, Kolb A, Graziani L, Brody EN, (1997) The interaction between the AsiA protein of bacteriophage T4 and the σ70 subunit of Escherichia coli RNA polymerase. J Biol Chem 272: 27435-27443.
    • (1997) J Biol Chem , vol.272 , pp. 27435-27443
    • Adelman, K.1    Orsini, G.2    Kolb, A.3    Graziani, L.4    Brody, E.N.5
  • 51
    • 0036899077 scopus 로고    scopus 로고
    • Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective?
    • Hengge-Aronis R, (2002) Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective? Curr Opin Microbiol 5: 591-595.
    • (2002) Curr Opin Microbiol , vol.5 , pp. 591-595
    • Hengge-Aronis, R.1
  • 52
    • 33846947959 scopus 로고    scopus 로고
    • The molecular basis of selective promoter activation by the sigma subunit of RNA polymerase
    • Typas A, Becker G, Hengge R, (2007) The molecular basis of selective promoter activation by the sigma subunit of RNA polymerase. Mol Microbiol 63: 1296-1306.
    • (2007) Mol Microbiol , vol.63 , pp. 1296-1306
    • Typas, A.1    Becker, G.2    Hengge, R.3
  • 53
    • 1242286997 scopus 로고    scopus 로고
    • Interactions between the 2.4 and 4.2 regions of σs, the stress-specific σ factor of Escherichia coli, and the -10 and -35 promoter elements
    • Checroun C, Bordes P, Leroy O, Kolb A, Gutierrez C, (2004) Interactions between the 2.4 and 4.2 regions of σs, the stress-specific σ factor of Escherichia coli, and the-10 and-35 promoter elements. Nucleic Acids Res 32: 45-53.
    • (2004) Nucleic Acids Res , vol.32 , pp. 45-53
    • Checroun, C.1    Bordes, P.2    Leroy, O.3    Kolb, A.4    Gutierrez, C.5
  • 54
    • 0028986818 scopus 로고
    • Selectivity of the Escherichia coli RNA polymerase E sigma 38 for overlapping promoters and ability to support CRP activation
    • Kolb A, Kotlarz D, Kusano S, Ishihama A, (1995) Selectivity of the Escherichia coli RNA polymerase E sigma 38 for overlapping promoters and ability to support CRP activation. Nucleic Acids Res 23: 819-826.
    • (1995) Nucleic Acids Res , vol.23 , pp. 819-826
    • Kolb, A.1    Kotlarz, D.2    Kusano, S.3    Ishihama, A.4
  • 55
    • 0033565797 scopus 로고    scopus 로고
    • Positioning of σs, the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes
    • Colland F, Fujita N, Kotlarz D, Bown JA, Meares CF, et al. (1999) Positioning of σs, the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes. EMBO J 18: 4049-4059.
    • (1999) EMBO J , vol.18 , pp. 4049-4059
    • Colland, F.1    Fujita, N.2    Kotlarz, D.3    Bown, J.A.4    Meares, C.F.5
  • 56
    • 0036009245 scopus 로고    scopus 로고
    • The interaction between σs, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase
    • Colland F, Fujita N, Ishihama A, Kolb A, (2002) The interaction between σs, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase. Genes Cells 7: 233-247.
    • (2002) Genes Cells , vol.7 , pp. 233-247
    • Colland, F.1    Fujita, N.2    Ishihama, A.3    Kolb, A.4
  • 57
    • 0033975447 scopus 로고    scopus 로고
    • Involvement of differential efficiency of transcription by Eσs and Eσ70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter
    • Bordes P, Repoila F, Kolb A, Gutierrez C, (2000) Involvement of differential efficiency of transcription by Eσs and Eσ70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter. Mol Microbiol 35: 845-853.
    • (2000) Mol Microbiol , vol.35 , pp. 845-853
    • Bordes, P.1    Repoila, F.2    Kolb, A.3    Gutierrez, C.4
  • 58
    • 33947608392 scopus 로고    scopus 로고
    • Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigma(s) activity and levels
    • Typas A, Barembruch C, Possling A, Hengge R, (2007) Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigma(s) activity and levels. EMBO J 26: 1569-1578.
    • (2007) EMBO J , vol.26 , pp. 1569-1578
    • Typas, A.1    Barembruch, C.2    Possling, A.3    Hengge, R.4
  • 59
    • 34548153206 scopus 로고    scopus 로고
    • Crystal Structure of the Escherichia coli Regulator of sigma(70), Rsd, in Complex with sigma(70) Domain 4
    • Patikoglou GA, Westblade LF, Campbell EA, Lamour V, Lane WJ, et al. (2007) Crystal Structure of the Escherichia coli Regulator of sigma(70), Rsd, in Complex with sigma(70) Domain 4. J Mol Biol 372: 649-659.
    • (2007) J Mol Biol , vol.372 , pp. 649-659
    • Patikoglou, G.A.1    Westblade, L.F.2    Campbell, E.A.3    Lamour, V.4    Lane, W.J.5
  • 60
    • 55349117114 scopus 로고    scopus 로고
    • Rsd family proteins make simultaneous interactions with regions 2 and 4 of the primary sigma factor
    • Yuan AH, Gregory BD, Sharp JS, McCleary KD, Dove SL, et al. (2008) Rsd family proteins make simultaneous interactions with regions 2 and 4 of the primary sigma factor. Mol Microbiol 70: 1136-1151.
    • (2008) Mol Microbiol , vol.70 , pp. 1136-1151
    • Yuan, A.H.1    Gregory, B.D.2    Sharp, J.S.3    McCleary, K.D.4    Dove, S.L.5
  • 61
    • 0035827509 scopus 로고    scopus 로고
    • The Escherichia coli RNA polymerase-anti-sigma 70 AsiA complex utilizes alpha-carboxyl-terminal domain upstream promoter contacts to transcribe from a -10/-35 promoter
    • Orsini G, Kolb A, Buc H, (2001) The Escherichia coli RNA polymerase-anti-sigma 70 AsiA complex utilizes alpha-carboxyl-terminal domain upstream promoter contacts to transcribe from a-10/-35 promoter. J Biol Chem 276: 19812-19819.
    • (2001) J Biol Chem , vol.276 , pp. 19812-19819
    • Orsini, G.1    Kolb, A.2    Buc, H.3
  • 62
    • 4143133402 scopus 로고    scopus 로고
    • T4 AsiA blocks DNA recognition by remodeling sigma70 region 4
    • Lambert LJ, Wei Y, Schirf V, Demeler B, Werner MH, (2004) T4 AsiA blocks DNA recognition by remodeling sigma70 region 4. EMBO J 23: 2952-2962.
    • (2004) EMBO J , vol.23 , pp. 2952-2962
    • Lambert, L.J.1    Wei, Y.2    Schirf, V.3    Demeler, B.4    Werner, M.H.5
  • 63
    • 47049102125 scopus 로고    scopus 로고
    • Differential mechanisms of binding of anti-sigma factors Escherichia coli Rsd and bacteriophage T4 AsiA to E. coli RNA polymerase lead to diverse physiological consequences
    • Sharma UK, Chatterji D, (2008) Differential mechanisms of binding of anti-sigma factors Escherichia coli Rsd and bacteriophage T4 AsiA to E. coli RNA polymerase lead to diverse physiological consequences. J Bacteriol 190: 3434-3443.
    • (2008) J Bacteriol , vol.190 , pp. 3434-3443
    • Sharma, U.K.1    Chatterji, D.2
  • 64
    • 33645860823 scopus 로고    scopus 로고
    • The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription
    • Bernardo LM, Johansson LU, Solera D, Skarfstad E, Shingler V, (2006) The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription. Mol Microbiol 60: 749-764.
    • (2006) Mol Microbiol , vol.60 , pp. 749-764
    • Bernardo, L.M.1    Johansson, L.U.2    Solera, D.3    Skarfstad, E.4    Shingler, V.5
  • 65
    • 39849100395 scopus 로고    scopus 로고
    • Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo
    • Aberg A, Shingler V, Balsalobre C, (2008) Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. Mol Microbiol 67: 1223-1241.
    • (2008) Mol Microbiol , vol.67 , pp. 1223-1241
    • Aberg, A.1    Shingler, V.2    Balsalobre, C.3
  • 66
    • 34447540221 scopus 로고    scopus 로고
    • Identical, Independent, and Opposing Roles of ppGpp and DksA in Escherichia coli
    • Magnusson LU, Gummesson B, Joksimovic P, Farewell A, Nystrom T, (2007) Identical, Independent, and Opposing Roles of ppGpp and DksA in Escherichia coli. J Bacteriol 189: 5193-5202.
    • (2007) J Bacteriol , vol.189 , pp. 5193-5202
    • Magnusson, L.U.1    Gummesson, B.2    Joksimovic, P.3    Farewell, A.4    Nystrom, T.5
  • 67
    • 65549155326 scopus 로고    scopus 로고
    • Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli
    • Aberg A, Fernandez-Vazquez J, Cabrer-Panes JD, Sanchez A, Balsalobre C, (2009) Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli. J Bacteriol 191: 3226-3236.
    • (2009) J Bacteriol , vol.191 , pp. 3226-3236
    • Aberg, A.1    Fernandez-Vazquez, J.2    Cabrer-Panes, J.D.3    Sanchez, A.4    Balsalobre, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.