-
1
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
DOI 10.1093/bioinformatics/bti770
-
K. Arnold, L. Bordoli, J. Kopp, and T. Schwede The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling Bioinformatics 22 2006 195 201 (Pubitemid 43205406)
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
2
-
-
77957585573
-
Cryo-EM of macromolecular assemblies at near-atomic resolution
-
M.L. Baker, J. Zhang, S.J. Ludtke, and W. Chiu Cryo-EM of macromolecular assemblies at near-atomic resolution Nat. Protoc. 5 2010 1697 1708
-
(2010)
Nat. Protoc.
, vol.5
, pp. 1697-1708
-
-
Baker, M.L.1
Zhang, J.2
Ludtke, S.J.3
Chiu, W.4
-
3
-
-
39349083915
-
Adapting proteostasis for disease intervention
-
DOI 10.1126/science.1141448
-
W.E. Balch, R.I. Morimoto, A. Dillin, and J.W. Kelly Adapting proteostasis for disease intervention Science 319 2008 916 919 (Pubitemid 351263754)
-
(2008)
Science
, vol.319
, Issue.5865
, pp. 916-919
-
-
Balch, W.E.1
Morimoto, R.I.2
Dillin, A.3
Kelly, J.W.4
-
4
-
-
46449109112
-
Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT
-
DOI 10.1038/nsmb.1436, PII NSMB1436
-
C.R. Booth, A.S. Meyer, Y. Cong, M. Topf, A. Sali, S.J. Ludtke, W. Chiu, and J. Frydman Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT Nat. Struct. Mol. Biol. 15 2008 746 753 (Pubitemid 351931999)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.7
, pp. 746-753
-
-
Booth, C.R.1
Meyer, A.S.2
Cong, Y.3
Topf, M.4
Sali, A.5
Ludtke, S.J.6
Chiu, W.7
Frydman, J.8
-
5
-
-
0028885711
-
Conformational variability in the refined structure of the chaperonin GroEL at 2.8 A resolution
-
K. Braig, P.D. Adams, and A.T. Brünger Conformational variability in the refined structure of the chaperonin GroEL at 2.8 A resolution Nat. Struct. Biol. 2 1995 1083 1094
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 1083-1094
-
-
Braig, K.1
Adams, P.D.2
Brünger, A.T.3
-
6
-
-
0141754010
-
Role of the γ-phosphate of ATP in triggering protein folding by GroEL-GroES: Function, structure and energetics
-
DOI 10.1093/emboj/cdg477
-
C. Chaudhry, G.W. Farr, M.J. Todd, H.S. Rye, A.T. Brunger, P.D. Adams, A.L. Horwich, and P.B. Sigler Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics EMBO J. 22 2003 4877 4887 (Pubitemid 37222010)
-
(2003)
EMBO Journal
, vol.22
, Issue.19
, pp. 4877-4887
-
-
Chaudhry, C.1
Farr, G.W.2
Todd, M.J.3
Rye, H.S.4
Brunger, A.T.5
Adams, P.D.6
Horwich, A.L.7
Sigler, P.B.8
-
7
-
-
4143061452
-
Exploring the structural dynamics of the E. coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states
-
DOI 10.1016/j.jmb.2004.07.015, PII S0022283604008253
-
C. Chaudhry, A.L. Horwich, A.T. Brunger, and P.D. Adams Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration- screw crystallographic refinement of intermediate states J. Mol. Biol. 342 2004 229 245 (Pubitemid 39094518)
-
(2004)
Journal of Molecular Biology
, vol.342
, Issue.1
, pp. 229-245
-
-
Chaudhry, C.1
Horwich, A.L.2
Brunger, A.T.3
Adams, P.D.4
-
8
-
-
0028586011
-
Two yeast genes with similarity to TCP-1 are required for microtubule and actin function in vivo
-
X. Chen, D.S. Sullivan, and T.C. Huffaker Two yeast genes with similarity to TCP-1 are required for microtubule and actin function in vivo Proc. Natl. Acad. Sci. USA 91 1994 9111 9115
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 9111-9115
-
-
Chen, X.1
Sullivan, D.S.2
Huffaker, T.C.3
-
9
-
-
77950456761
-
4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement
-
Y. Cong, M.L. Baker, J. Jakana, D. Woolford, E.J. Miller, S. Reissmann, R.N. Kumar, A.M. Redding-Johanson, T.S. Batth, and A. Mukhopadhyay 4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement Proc. Natl. Acad. Sci. USA 107 2010 4967 4972
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4967-4972
-
-
Cong, Y.1
Baker, M.L.2
Jakana, J.3
Woolford, D.4
Miller, E.J.5
Reissmann, S.6
Kumar, R.N.7
Redding-Johanson, A.M.8
Batth, T.S.9
Mukhopadhyay, A.10
-
10
-
-
68949187842
-
Refinement of protein structures into low-resolution density maps using rosetta
-
F. DiMaio, M.D. Tyka, M.L. Baker, W. Chiu, and D. Baker Refinement of protein structures into low-resolution density maps using rosetta J. Mol. Biol. 392 2009 181 190
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 181-190
-
-
Dimaio, F.1
Tyka, M.D.2
Baker, M.L.3
Chiu, W.4
Baker, D.5
-
11
-
-
0032478545
-
Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
-
DOI 10.1016/S0092-8674(00)81152-6
-
L. Ditzel, J. Löwe, D. Stock, K.O. Stetter, H. Huber, R. Huber, and S. Steinbacher Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT Cell 93 1998 125 138 (Pubitemid 28173558)
-
(1998)
Cell
, vol.93
, Issue.1
, pp. 125-138
-
-
Ditzel, L.1
Lowe, J.2
Stock, D.3
Stetter, K.-O.4
Huber, H.5
Huber, R.6
Steinbacher, S.7
-
12
-
-
0842281551
-
Principles of protein folding, misfolding and aggregation
-
DOI 10.1016/j.semcdb.2003.12.008
-
C.M. Dobson Principles of protein folding, misfolding and aggregation Semin. Cell Dev. Biol. 15 2004 3 16 (Pubitemid 38177363)
-
(2004)
Seminars in Cell and Developmental Biology
, vol.15
, Issue.1
, pp. 3-16
-
-
Dobson, C.M.1
-
13
-
-
78651499753
-
Dual action of ATP hydrolysis couples lid closure to substrate release into the group II chaperonin chamber
-
N.R. Douglas, S. Reissmann, J. Zhang, B. Chen, J. Jakana, R.N. Kumar, W. Chiu, and J. Frydman Dual action of ATP hydrolysis couples lid closure to substrate release into the group II chaperonin chamber Cell 144 2011 240 252
-
(2011)
Cell
, vol.144
, pp. 240-252
-
-
Douglas, N.R.1
Reissmann, S.2
Zhang, J.3
Chen, B.4
Jakana, J.5
Kumar, R.N.6
Chiu, W.7
Frydman, J.8
-
14
-
-
0037040541
-
Protein folding. Molecular chaperones in the cytosol: From nascent chain to folded protein
-
DOI 10.1126/science.1068408
-
F.U. Hartl, and M. Hayer-Hartl Molecular chaperones in the cytosol: from nascent chain to folded protein Science 295 2002 1852 1858 (Pubitemid 34214115)
-
(2002)
Science
, vol.295
, Issue.5561
, pp. 1852-1858
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
15
-
-
0842332836
-
NMR Studies on the Substrate-binding Domains of the Thermosome: Structural Plasticity in the Protrusion Region
-
DOI 10.1016/j.jmb.2003.12.035
-
M. Heller, M. John, M. Coles, G. Bosch, W. Baumeister, and H. Kessler NMR studies on the substrate-binding domains of the thermosome: structural plasticity in the protrusion region J. Mol. Biol. 336 2004 717 729 (Pubitemid 38183024)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.3
, pp. 717-729
-
-
Heller, M.1
John, M.2
Coles, M.3
Bosch, G.4
Baumeister, W.5
Kessler, H.6
-
16
-
-
78650800250
-
The group II chaperonin Mm-Cpn binds and refolds human γd crystallin
-
K.M. Knee, D.R. Goulet, J. Zhang, B. Chen, W. Chiu, and J.A. King The group II chaperonin Mm-Cpn binds and refolds human γD crystallin Protein Sci. 20 2011 30 41
-
(2011)
Protein Sci.
, vol.20
, pp. 30-41
-
-
Knee, K.M.1
Goulet, D.R.2
Zhang, J.3
Chen, B.4
Chiu, W.5
King, J.A.6
-
17
-
-
0038413900
-
Nucleotide-dependent protein folding in the type II chaperonin from the mesophilic archaeon Methanococcus maripaludis
-
DOI 10.1042/BJ20030230
-
A.R. Kusmierczyk, and J. Martin Nucleotide-dependent protein folding in the type II chaperonin from the mesophilic archaeon Methanococcus maripaludis Biochem. J. 371 2003 669 673 (Pubitemid 36578866)
-
(2003)
Biochemical Journal
, vol.371
, Issue.3
, pp. 669-673
-
-
Kusmierczyk, A.R.1
Martin, J.2
-
18
-
-
0034665864
-
A dynamic model for the allosteric mechanism of GroEL
-
J. Ma, P.B. Sigler, Z. Xu, and M. Karplus A dynamic model for the allosteric mechanism of GroEL J. Mol. Biol. 302 2000 303 313
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 303-313
-
-
Ma, J.1
Sigler, P.B.2
Xu, Z.3
Karplus, M.4
-
19
-
-
77956256437
-
Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle
-
J.H. Pereira, C.Y. Ralston, N.R. Douglas, D. Meyer, K.M. Knee, D.R. Goulet, J.A. King, J. Frydman, and P.D. Adams Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle J. Biol. Chem. 285 2010 27958 27966
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 27958-27966
-
-
Pereira, J.H.1
Ralston, C.Y.2
Douglas, N.R.3
Meyer, D.4
Knee, K.M.5
Goulet, D.R.6
King, J.A.7
Frydman, J.8
Adams, P.D.9
-
20
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera-a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
21
-
-
0035966323
-
ATP-bound states of GroEL captured by cryo-electron microscopy
-
DOI 10.1016/S0092-8674(01)00617-1
-
N.A. Ranson, G.W. Farr, A.M. Roseman, B. Gowen, W.A. Fenton, A.L. Horwich, and H.R. Saibil ATP-bound states of GroEL captured by cryo-electron microscopy Cell 107 2001 869 879 (Pubitemid 34084978)
-
(2001)
Cell
, vol.107
, Issue.7
, pp. 869-879
-
-
Ranson, N.A.1
Farr, G.W.2
Roseman, A.M.3
Gowen, B.4
Fenton, W.A.5
Horwich, A.L.6
Saibil, H.R.7
-
22
-
-
32244441663
-
Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes
-
DOI 10.1038/nsmb1046, PII NSMB1046
-
N.A. Ranson, D.K. Clare, G.W. Farr, D. Houldershaw, A.L. Horwich, and H.R. Saibil Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes Nat. Struct. Mol. Biol. 13 2006 147 152 (Pubitemid 43214718)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.2
, pp. 147-152
-
-
Ranson, N.A.1
Clare, D.K.2
Farr, G.W.3
Houldershaw, D.4
Horwich, A.L.5
Saibil, H.R.6
-
23
-
-
34247635168
-
Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins
-
DOI 10.1038/nsmb1236, PII NSMB1236
-
S. Reissmann, C. Parnot, C.R. Booth, W. Chiu, and J. Frydman Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins Nat. Struct. Mol. Biol. 14 2007 432 440 (Pubitemid 46685886)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.5
, pp. 432-440
-
-
Reissmann, S.1
Parnot, C.2
Booth, C.R.3
Chiu, W.4
Frydman, J.5
-
24
-
-
0019987933
-
The correlation averaging of a regularly arranged bacterial cell envelope protein
-
W.O. Saxton, and W. Baumeister The correlation averaging of a regularly arranged bacterial cell envelope protein J. Microsc. 127 1982 127 138 (Pubitemid 12060892)
-
(1982)
Journal of Microscopy
, vol.127
, Issue.2
, pp. 127-138
-
-
Saxton, W.O.1
Baumeister, W.2
-
25
-
-
36749078686
-
Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution
-
DOI 10.1016/j.str.2007.09.021, PII S096921260700411X
-
G.F. Schröder, A.T. Brunger, and M. Levitt Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution Structure 15 2007 1630 1641 (Pubitemid 350213409)
-
(2007)
Structure
, vol.15
, Issue.12
, pp. 1630-1641
-
-
Schroder, G.F.1
Brunger, A.T.2
Levitt, M.3
-
26
-
-
0347757092
-
Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms
-
DOI 10.1016/j.jmb.2003.11.028
-
Y. Shomura, T. Yoshida, R. Iizuka, T. Maruyama, M. Yohda, and K. Miki Crystal structures of the group II chaperonin from Thermococcus strain KS-1: steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms J. Mol. Biol. 335 2004 1265 1278 (Pubitemid 38081291)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.5
, pp. 1265-1278
-
-
Shomura, Y.1
Yoshida, T.2
Iizuka, R.3
Maruyama, T.4
Yohda, M.5
Miki, K.6
-
27
-
-
7444231693
-
Mechanism of the eukaryotic chaperonin: Protein folding in the chamber of secrets
-
DOI 10.1016/j.tcb.2004.09.015, PII S0962892404002661
-
C. Spiess, A.S. Meyer, S. Reissmann, and J. Frydman Mechanism of the eukaryotic chaperonin: protein folding in the chamber of secrets Trends Cell Biol. 14 2004 598 604 (Pubitemid 39440608)
-
(2004)
Trends in Cell Biology
, vol.14
, Issue.11
, pp. 598-604
-
-
Spiess, C.1
Meyer, A.S.2
Reissmann, S.3
Frydman, J.4
-
28
-
-
0030870719
-
The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex
-
DOI 10.1038/41944
-
Z. Xu, A.L. Horwich, and P.B. Sigler The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex Nature 388 1997 741 750 (Pubitemid 27375147)
-
(1997)
Nature
, vol.388
, Issue.6644
, pp. 741-750
-
-
Xu, Z.1
Horwich, A.L.2
Sigler, P.B.3
-
29
-
-
57149098022
-
Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies
-
A.Y. Yam, Y. Xia, H.T. Lin, A. Burlingame, M. Gerstein, and J. Frydman Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies Nat. Struct. Mol. Biol. 15 2008 1255 1262
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1255-1262
-
-
Yam, A.Y.1
Xia, Y.2
Lin, H.T.3
Burlingame, A.4
Gerstein, M.5
Frydman, J.6
-
30
-
-
75149145980
-
Mechanism of folding chamber closure in a group II chaperonin
-
J. Zhang, M.L. Baker, G.F. Schroder, N.R. Douglas, S. Reissmann, J. Jakana, M. Dougherty, C.J. Fu, M. Levitt, and S.J. Ludtke Mechanism of folding chamber closure in a group II chaperonin Nature 463 2010 379 383
-
(2010)
Nature
, vol.463
, pp. 379-383
-
-
Zhang, J.1
Baker, M.L.2
Schroder, G.F.3
Douglas, N.R.4
Reissmann, S.5
Jakana, J.6
Dougherty, M.7
Fu, C.J.8
Levitt, M.9
Ludtke, S.J.10
|