A morphological and phylogenetic revision of the Nectria cinnabarina species complex

Studies in Mycology

Volumn 68, Issue , 2011, Pages 35-56

  Hirooka, Y ^a,b   Rossman, A Y ^b   Chaverri, P ^a  

^a UNIVERSITY OF MARYLAND   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Ascomycota; Hypocreales; Molecular Systematics; Nectriaceae; Plant Pathogen; Type Species.

Indexed keywords

ASCOMYCOTA; FUNGI; HYPOCREALES; NECTRIA (ASCOMYCETE); NECTRIA CINNABARINA; NECTRIACEAE;

EID: 79955768943     PISSN: 01660616     EISSN: None     Source Type: Journal    
DOI: 10.3114/sim.2011.68.02     Document Type: Article

References (63)

1. Bazinet AL, Cummings MP (2008). The Lattice Project: a grid research and production environment combining multiple grid computing models. In: Distributed & grid computing - science made transparent for everyone. Weber MHW, ed. Rechenkraft.net.
2. Beck R (1902). Beiträge zur Morphologie und Biologie der forstlich wichtigen Nectria-Arten, insbes. Der Nectria cinnabarina (Tode) Fr. Tharander forstliches Jahrbuch. 52: 161-206.
3. Bedker PJ, Blanchette RA (1984). Identification and control of cankers caused by Nectria cinnabarina of honey locust. Journal of Arboriculture 10: 33-39.
4. Booth C (1959). Studies of Pyrenomycetes: IV. Nectria (Part I). Mycological Papers 73: 1-115.
5. Booth C (1977). Nectria cinnabarina. CMI Descriptions of Pathogenic Fungi and Bacteria. No. 531.
6. Brefeld O (1891). Untersuchungen aus dem Gesammtgebiete der Mykologie. Heft 10: Ascomyceten II. Münster.
7. Cannon PF, Hawksworth DL (1983) (701) Proposal to conserve Nectria over Ephedrosphaera and Hydropisphaera (Fungi). Taxon 32: 476-477.
8. Carbone I, Kohn LM (1999). A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
9. Castlebury LA, Rossman AY, Sung GH, Hyten AS, Spatafora JW (2004). Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus. Mycological Research 108: 864-872.
10. Chaverri P, Samuels GJ (2003). Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): Species with green ascospores. Studies in Mycology 48: 1-116.
11. nd Edition. H.W. Wilson, New York.
12. Cummings MP, Huskamp JC (2005). Grid computing. Educause Review 40: 116-117.
13. Cunningham GH (1922). Coral-spot, Nectria cinnabarina (Tode) Fries. A wound parasite of fruit-trees. New Zealand Journal of Agriculture 25: 354-359.
14. Debons J, Chilembwe E, Braunwork Jr. WS, Mainjeni CED (1993). First report of Nectria twig blight on apple trees in Malawi, Africa. Plant Disease 77: 428.
15. Farr DF, Rossman AY (2010). Fungal Databases, Systematic Mycology and Microbiology Laboratory, ARS, USDA. Retrieved January 21, 2010, from http://nt.ars-grin.gov/fungaldatabases/
16. Fries EM (1828). Elenchus Fungorum Vol. 1, E. Mauritius, Greifswald.
17. Fries EM (1832). Systema mycologicum vol. 3, part 2. Greifswald.
18. Fries EM (1849). Summa vegetabilium Scandinaviae, Sectio posterior p. 259-572.
19. Fuckel L (1873). Symbolae mycologicae. Beitrage zur Kenntniss der rheinischen Pilze. Zweiter Nachtrag. Jahrbücher des Nassauischen Vereins für Naturkunde 27-28: 1-99.
20. Fuckel L (1874). Fungi rhenani exsicacati a Leopoldo Fuckel collecti. No. 2657.
21. Hara K (1918). Plant pathogenic fungi on mulberry tree. Journal of the Sericultural Association of Japan 27: 223-229.
22. Holmgren PK, Holmgren NH (1998). Index Herbariorum. New York Botanical Garden. .
23. Huelsenbeck JP, Ronquist F, Nielsen ES, Bollback JP, (2001). Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
24. Huelsenbeck JP, Larget B, Miller RE, Ronquist F (2002). Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51: 673-688.
25. Jøgensen HA (1952). Studies on Nectria cinnabarina hosts and variation. Den Konglige Veterinaerog Landbohøjskoles Årsskrift Copenhagen 35: 57-120.
26. John DM, Maggs CA (1997). Species problems in eukaryotic algae: a modern perspective. In: Species: The units of biodiversity. (Claridge MF, Dawah HA, Wilson MR, eds). Chapman & Hall, London: vol 54, 83-107.
27. Katoh T (2008). Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 286-298.
28. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008). Dictionary of the Fungi 10th Edition, CAB International: Wallingford, UK.
29. rd edn. Methuen, London.
30. Linnaeus C (1753). Species Plantarum. Laurentii Salvii, Holmiae.
31. Maddison WP, Maddison DR (2009). Mesquite: a modular system for evolutionary analysis. Version 2.6 http://mesquiteproject.org.
32. Mason-Gamer RJ, Kellogg EA (1996). Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
33. Mayr H (1883). Ueber den Parasitismus von Nectria cinnabarina Fr. Untersuchungen aus dem forstbotanischen Institute zu München. 3: 1-16.
34. McNeill JF, Barrie F, Burdet HM, Demoulin V, Hawksworth DL, Marhold K, Nicolson DH, Prado J, Silva PC, Skog JE, Wiersema J, Turland NJ (eds) (2006). International Code of Botanical Nomenclature (Vienna Code). Regnum Vegetabile Vol. 146. A.R.G. Ganter Verlag, Ruggell.
35. Myers DS, Bazinet AL, Cummings MP (2008). Expanding the reach of Grid computing: combining Globus- and BOINC-based systems. In: Grids for bioinformatics and computational biology. (Talbi E-G, Zomaya A, eds) John Wiley & Sons, New York: 71-85.
36. Nirenberg HI (1976). Untersuchungen über die Morphologische und biologische differenzierung in der Fusarium-Sektion Liseola. Mitteilungen aus der Biologischen Bundesanstalt für Land und Forstwirtschaft, Berlin-Dahlem 169: 1-117.
37. O'Donnell K, Cigelnik E (1997). Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7: 103-116.
38. Paoletti G (1887). Revisione del genere Tubercularia. Atti della Societa venetotrentina di scienze naturali 11: 52-66.
39. Petch T (1940). Tubercularia. Transactions of the British Mycological Society 24: 33-58.
40. Pfister DH (1985). A bibliographic account of exsiccatae containing fungi. Mycotaxon 23: 1-139.
41. Posada D (2008). jModelTest:Phylogenetic Model Averaging Averaging. http://darwin.uvigo.es/
42. Posada D, Buckley TR (2004). Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests. Systematic Biology 53: 793-808.
43. Reeb V, Lutzoni F, Roux C (2004). Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on lichen-forming Acarosporaceae and evolution of polyspory. Molecular Phylogenetics and Evolution 32: 1036-1060.
44. Rehner SA (2001). Primers for elongation factor 1-a (EF1-a). www.nacse.org/ yfaaberg/aftol/EF1primer.pdf.
45. Rossman AY (1983). The phragmosporous species of Nectria and related genera. Mycological Papers 150: 1-164.
46. Rossman AY (1989). A synopsis of the Nectria cinnabarina group. Memoirs of the New York Botanical Garden 49: 253-255.
47. Rossman AY, Samuels GJ, Rogerson CT, Lowen R (1999). Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Studies in Mycology 42: 1-248.
48. Saccardo PA (1886). Sylloge fungorum omnium hucusque cognitorum vol. IV. Padova.
49. Schroers HJ (2001). A monograph of Bionectria (Ascomycota, Hypocreales, Bionectriaceae) and its Clonostachys anamorphs. Studies in Mycology 46: 1-214.
50. Seifert KA (1985). A monograph of Stilbella and some allied Hyphomycetes. Studies in Mycology 27: 1-235.
51. Sinclair WA, Lyon H (2005). Diseases of Trees and Shrubs, Second Edition, Cornell University Press, Ithaca.
52. Spencer JA, Irvine LM, Jarvis CE (2009). Typification of Linnaean names relevant to algal nomenclature. Taxon 58: 237-260.
53. Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC (2000). Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32.
54. Tode HJ (1790). Fungi mecklenburgenses selecti. Vol. 1: 1-47. Lüneburg.
55. Tode HJ (1791). Fungi mecklenburgenses selecti. Vol. 2: 1-64. Lüneburg.
56. Tunstall AC (1923). Some observations on stem end root diseases. Quartity Journal of Indian Tea Association pp. 86-91.
57. Vilgalys R. n.d. Conserved primer sequences for PCR amplification and sequencing from nuclear ribosomal RNA. http://www.biology.duke.edu/fungi/mycolab/primers.htm Vilgalys Lab, Durham, NC.
58. Wang J, Li G, Lu, H, Zheng Z, Huang Y, Su W (2000). Taxol from Tubercularia sp. Strain TF5, an endophytic fungus of Taxus mairei. Federation of European Microbiological Societies Microbiology Letters 193: 249-253.
59. White TJ, Bruns T, Lee S, Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A guide to methods and applications. (Innis MA, Gelfand DH, Sninsky JJ, White TJ. eds). San Diego, California, USA: Academic Press: 315-322.
60. Wollenweber HW (1926). Pyrenomyceten-studien. II. Angewandte Botanik Bd. VII: 169-212.
61. Wollenweber HW (1930). Fusaria Autographice Delineata. Collectio Specierum ex Herbariis Variis Selectarum et ab Auctore Lectarum Cultarumque Synonymis et Excludendis Additis quas Determinavit, in Sectiones Digessit, Comparavit cum Hypocreaceis Analogis Praemissis ad Methodi Naturalis Normas et Culturae Purae Experientiam H.W. Wollenweber 3: i, 660-1100. Germany, Berlin.
62. Yasuda F, Izawa H (2007). The occurrence of coral spot of Japanese persimmon caused by Nectria cinnabarina (Tode:Fries) Fries. Journal of General Plant Pathology 73: 405-407.
63. Zwickl DJ (2006). Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion (Ph.D. dissertation). The University of Texas at Austin, Austin, TX