-
1
-
-
0034739881
-
Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
-
Kaneko, T., Nakamura, Y., Sato, S., et al. 2000, Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti, DNA Res., 31, 331 -338.
-
(2000)
DNA Res
, vol.31
, pp. 331-338
-
-
Kaneko, T.1
Nakamura, Y.2
Sato, S.3
-
2
-
-
0036928484
-
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
-
Kaneko, T., Nakamura, Y., Sato, S., et al. 2002, Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110, DNA Res., 9, 189-197.
-
(2002)
DNA Res
, vol.9
, pp. 189-197
-
-
Kaneko, T.1
Nakamura, Y.2
Sato, S.3
-
3
-
-
0035958746
-
The composite genome of the legume symbiont Sinorhizobium meliloti
-
Galibert, F., Finan, T. M., Long, S. R., et al. 2001, The composite genome of the legume symbiont Sinorhizobium meliloti, Science, 293, 668-672.
-
(2001)
Science
, vol.293
, pp. 668-672
-
-
Galibert, F.1
Finan, T.M.2
Long, S.R.3
-
4
-
-
33644861233
-
The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons
-
González, V., Santamaría, R. I., Bustos, P., et al. 2006, The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons, Proc. Natl. Acad. Sci. USA, 103, 3834-3839.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 3834-3839
-
-
González, V.1
Santamaría, R.I.2
Bustos, P.3
-
5
-
-
33745094990
-
The genome of Rhizobium leguminosarum has recognizable core and accessory components
-
Young, J. P., Crossman, L. C., Johnston, A.W., et al. 2006, The genome of Rhizobium leguminosarum has recognizable core and accessory components, Genome Biol., 7, R34.
-
(2006)
Genome Biol
, vol.7
-
-
Young, J.P.1
Crossman, L.C.2
Johnston, A.W.3
-
6
-
-
34249898934
-
Legumes symbioses: Absence of Nod genes in photosynthetic bradyrhizobia
-
Giraud, E., Moulin, L., Vallenet, D., Barbe, V., et al. 2007, Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia, Science, 316, 1307-1312.
-
(2007)
Science
, vol.316
, pp. 1307-1312
-
-
Giraud, E.1
Moulin, L.2
Vallenet, D.3
Barbe, V.4
-
7
-
-
0036031520
-
Comparative genomic analysis of plant-associated bacteria
-
Van Sluys, M. A., Monteiro-Vitorello,C. B., Camargo, L. E. A., et al. 2002, Comparative genomic analysis of plant-associated bacteria, Ann. Rev. Phytopathol., 40, 169-189.
-
(2002)
Ann. Rev. Phytopathol
, vol.40
, pp. 169-189
-
-
Van Sluys, M.A.1
Monteiro-Vitorello, C.B.2
Camargo, L.E.A.3
-
8
-
-
0021191671
-
Rhizobium phaseoli symbiotic mutants with transposon Tn5 insertions
-
Noel, K. D., Sanchez, A., Fernandez, L., Leemans, J. and Cevallos, M. A. 1984, Rhizobium phaseoli symbiotic mutants with transposon Tn5 insertions, J. Bacteriol., 158, 148-155.
-
(1984)
J. Bacteriol
, vol.158
, pp. 148-155
-
-
Noel, K.D.1
Sanchez, A.2
Fernandez, L.3
Leemans, J.4
Cevallos, M.A.5
-
9
-
-
27744551607
-
Characterization of Bacteroid Proteins in Soybean Nodules Formed with Bradyrhizobium japonicum USDA110
-
Hoa, L. T. P., Nomura, M. and Tajima, S. 2004, Characterization of Bacteroid Proteins in Soybean Nodules Formed with Bradyrhizobium japonicum USDA110, Microb. Environ., 19, 71-75.
-
(2004)
Microb. Environ
, vol.19
, pp. 71-75
-
-
Hoa, L.T.P.1
Nomura, M.2
Tajima, S.3
-
10
-
-
0037313633
-
Development of Sinorhizobium meliloti Pilot Macroarrays for Transcriptome Analysis
-
Bergès, H., Lauber, E., Liebe, C., et al. 2003, Development of Sinorhizobium meliloti Pilot Macroarrays for Transcriptome Analysis, Appl. Environ. Microbiol., 69, 1214-1219.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 1214-1219
-
-
Bergès, H.1
Lauber, E.2
Liebe, C.3
-
11
-
-
0038586317
-
A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation
-
Djordjevic, M. A., Chen, H. C., Natera, S., et al. 2003, A global analysis of protein expression profiles in Sinorhizobium meliloti: discovery of new genes for nodule occupancy and stress adaptation, Mol. Plant Microbe Interact., 16, 508-524.
-
(2003)
Mol. Plant Microbe Interact
, vol.16
, pp. 508-524
-
-
Djordjevic, M.A.1
Chen, H.C.2
Natera, S.3
-
12
-
-
9344251110
-
A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction
-
Barnett, M. J., Toman, C. J., Fisher, R. F. and Long, S. R. 2004, A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction, Proc. Natl. Acad. Sci. USA, 101, 16636-16641.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 16636-16641
-
-
Barnett, M.J.1
Toman, C.J.2
Fisher, R.F.3
Long, S.R.4
-
13
-
-
27744579098
-
Global protein expression pattern of Bradyrhizobium japonicum bacteroids: A prelude to functional proteomics
-
Sarma, A. D. and Emerich, D. W. 2005, Global protein expression pattern of Bradyrhizobium japonicum bacteroids: a prelude to functional proteomics, Proteomics, 5, 4170-4184.
-
(2005)
Proteomics
, vol.5
, pp. 4170-4184
-
-
Sarma, A.D.1
Emerich, D.W.2
-
14
-
-
11144357404
-
Expression islands clustered on symbiosis island of Mesorhizobium loti genome
-
Uchiumi, T., Oowada, T., Itakura, M., et al. 2004, Expression islands clustered on symbiosis island of Mesorhizobium loti genome, J. Bacteriol., 45, 2439-2448.
-
(2004)
J. Bacteriol
, vol.45
, pp. 2439-2448
-
-
Uchiumi, T.1
Oowada, T.2
Itakura, M.3
-
15
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P., Giot, L, Cagney, G., et al. 2000, A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae, Nature, 403, 623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
-
16
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M. and Sakaki, Y. 2001, A comprehensive two-hybrid analysis to explore the yeast protein interactome, Proc. Natl. Acad. Sci. USA, 98, 4569-4574.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
17
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
Walhout, A. J. M., Sordella, R., Lu, X., et al. 2000, Protein interaction mapping in C. elegans using proteins involved in vulval development, Science, 287, 116-121.
-
(2000)
Science
, vol.287
, pp. 116-121
-
-
Walhout, A.J.M.1
Sordella, R.2
Lu, X.3
-
18
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot, L., Bader, J. S., Brouwer, C., et al. 2003, A protein interaction map of Drosophila melanogaster, Science, 302, 1727-1736.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
-
19
-
-
0036851301
-
Protein-protein interactions between large proteins: Two-hybrid screening using a functionally classified library composed of long cDNAs
-
Nakayama, M., Kikuno, R. and Ohara, O. 2002, Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs, Genome Res., 12, 1773-1784.
-
(2002)
Genome Res
, vol.12
, pp. 1773-1784
-
-
Nakayama, M.1
Kikuno, R.2
Ohara, O.3
-
20
-
-
0027215943
-
A simple and rapid method for the preparation of gram-negative bacterial genomic DNA
-
Chen, W. P. and Kuo, T. T. 1993, A simple and rapid method for the preparation of gram-negative bacterial genomic DNA, Nucleic Acid Res., 21, 2260.
-
(1993)
Nucleic Acid Res
, vol.21
, pp. 2260
-
-
Chen, W.P.1
Kuo, T.T.2
-
21
-
-
0036493195
-
Interaction generality, a measurement to assess the reliability of a protein-protein interaction
-
Saito, R., Suzuki, H. and Hayashizaki, Y. 2002, Interaction generality, a measurement to assess the reliability of a protein-protein interaction, Nucleic Acids Res., 30, 1163-1168.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1163-1168
-
-
Saito, R.1
Suzuki, H.2
Hayashizaki, Y.3
-
22
-
-
39749105401
-
A large scale protein-protein interaction analysis in Synechocystis sp. PCC6803
-
in press
-
Sato, S., Shimoda, Y., Muraki, A., Kohara, M., Nakamura, Y. and Tabata, S. 2007, A large scale protein-protein interaction analysis in Synechocystis sp. PCC6803, DNA Res., in press.
-
(2007)
DNA Res
-
-
Sato, S.1
Shimoda, Y.2
Muraki, A.3
Kohara, M.4
Nakamura, Y.5
Tabata, S.6
-
23
-
-
0034756446
-
Protein-protein interaction panel using mouse full-length cDNAs
-
Suzuki, H., Fukunishi, Y., Kagawa, I., et al. 2007, Protein-protein interaction panel using mouse full-length cDNAs, Genome Res., 11, 1758-1765.
-
(2007)
Genome Res
, vol.11
, pp. 1758-1765
-
-
Suzuki, H.1
Fukunishi, Y.2
Kagawa, I.3
-
24
-
-
0037250151
-
InterDom: A database of putative interacting protein domains for validating predicted protein interactions and complexes
-
Ng, S-K., Zhang, Z., Tan, S-H. and Lin, K. 2003, InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes, Nucleic Acids Res., 31, 251-254.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 251-254
-
-
Ng, S.-K.1
Zhang, Z.2
Tan, S.-H.3
Lin, K.4
-
25
-
-
33745160404
-
Large-scale indentification of protein-protein interaction of Escherichia coli K-12
-
Arifuzzaman, M., Maeda, M., Itoh, A., et al. 2006, Large-scale indentification of protein-protein interaction of Escherichia coli K-12, Genome Res., 16, 686-691.
-
(2006)
Genome Res
, vol.16
, pp. 686-691
-
-
Arifuzzaman, M.1
Maeda, M.2
Itoh, A.3
-
26
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek, R., Fonstein, M., D'Souza, M., Pusch, G. D. and Maltsev, N. 1999, The use of gene clusters to infer functional coupling, Proc. Natl. Acad. Sci. USA, 96, 2896-2901.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
27
-
-
0037197886
-
The identification of functional modules from the genomic association of genes
-
Snel, B., Bork, P. and Huynen, M. A. 2002, The identification of functional modules from the genomic association of genes, Proc. Natl. Acad. Sci. USA, 99, 5890-5895.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5890-5895
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
28
-
-
0032877827
-
Molecular evolution of helix-turn-helix proteins
-
Rosinski, J. A. and Atchley, W. R. 1999, Molecular evolution of helix-turn-helix proteins, J. Mol. Evol., 49, 301-309.
-
(1999)
J. Mol. Evol
, vol.49
, pp. 301-309
-
-
Rosinski, J.A.1
Atchley, W.R.2
-
29
-
-
0033559680
-
The high-resolution crystal structure of the molybdate-dependent transcriptional regulator (ModE) from Escherichia coli: A novel combination of domain folds
-
Hall, D. R., Gourley, D. G., Leonard, G. A., et al. 1999, The high-resolution crystal structure of the molybdate-dependent transcriptional regulator (ModE) from Escherichia coli: a novel combination of domain folds, EMBO J., 18, 1435-1446.
-
(1999)
EMBO J
, vol.18
, pp. 1435-1446
-
-
Hall, D.R.1
Gourley, D.G.2
Leonard, G.A.3
-
30
-
-
33746263240
-
Protein-protein interactions of hyperthermophilic archeaon Pyrococcus horikoshii OT3
-
Usui, K., Katayama, S., Kanamori-Katayama, M., et al. 2005, Protein-protein interactions of hyperthermophilic archeaon Pyrococcus horikoshii OT3, Genome Biol., 5, R98.
-
(2005)
Genome Biol
, vol.5
-
-
Usui, K.1
Katayama, S.2
Kanamori-Katayama, M.3
-
31
-
-
34848913963
-
Evolution of protein complexes by duplication of homomeric interactions
-
Pereira-Leal, J. B., Levy, E. D., Kamp, C. and Teichmann, S. A. 2007, Evolution of protein complexes by duplication of homomeric interactions, Genome Biol., 8, R51.
-
(2007)
Genome Biol
, vol.8
-
-
Pereira-Leal, J.B.1
Levy, E.D.2
Kamp, C.3
Teichmann, S.A.4
-
32
-
-
0036606577
-
Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam
-
Romanowski, M. J. and Burle, S. K. 2002, Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam, Proteins, 47, 558-562.
-
(2002)
Proteins
, vol.47
, pp. 558-562
-
-
Romanowski, M.J.1
Burle, S.K.2
-
33
-
-
0030870719
-
The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex
-
Xu, Z., Horwich, A. L. and Sigler, P. B. 1997, The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex, Nature, 388, 741-750.
-
(1997)
Nature
, vol.388
, pp. 741-750
-
-
Xu, Z.1
Horwich, A.L.2
Sigler, P.B.3
-
34
-
-
0027979988
-
An insertional point mutation inactivates NoIR repressor in Rhizobium meliloti 1021
-
Cren, M., Kodorosi, A. and Kndorosi, E 1994, An insertional point mutation inactivates NoIR repressor in Rhizobium meliloti 1021, J. Bacteriol., 176, 518-519.
-
(1994)
J. Bacteriol
, vol.176
, pp. 518-519
-
-
Cren, M.1
Kodorosi, A.2
Kndorosi, E.3
-
35
-
-
0025878267
-
A hemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti
-
Gilles-Gonzalez, M. A., Ditta, D. S. and Helinski, D. R. 1991, A hemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti, Nature, 350, 170-172.
-
(1991)
Nature
, vol.350
, pp. 170-172
-
-
Gilles-Gonzalez, M.A.1
Ditta, D.S.2
Helinski, D.R.3
-
36
-
-
33745728230
-
The ntrPR operon of Sinorhizobium meliloti is organized and functions as a toxin-antitoxin module
-
Bodogai, M., Ferenczi, S., Bashtovyy, D., Miclea, P., Papp, P. and Dusha, I. 2006, The ntrPR operon of Sinorhizobium meliloti is organized and functions as a toxin-antitoxin module, Mol. Plant Microbe Interact., 19, 811-822.
-
(2006)
Mol. Plant Microbe Interact
, vol.19
, pp. 811-822
-
-
Bodogai, M.1
Ferenczi, S.2
Bashtovyy, D.3
Miclea, P.4
Papp, P.5
Dusha, I.6
-
37
-
-
0027204867
-
Symbiotic nitrogen fixation by a nifA deletion mutant of Rhizobium meliloti: The role of an unusual ntrC allele
-
Labes, M., Rastogi, V., Watson, R. and Finan, T. M. 1993, Symbiotic nitrogen fixation by a nifA deletion mutant of Rhizobium meliloti: the role of an unusual ntrC allele, J. Bacteriol., 175, 2662-2673.
-
(1993)
J. Bacteriol
, vol.175
, pp. 2662-2673
-
-
Labes, M.1
Rastogi, V.2
Watson, R.3
Finan, T.M.4
-
38
-
-
1642500165
-
The NifL-NifA system: A multidomain transcriptional regulatory complex that integrates environmental signals
-
Martinez-Argudo, I., Little, R., Shearer, N., Johnson, p. and Dixon, R. 2004, The NifL-NifA system: a multidomain transcriptional regulatory complex that integrates environmental signals, J. Bacteriol., 186, 601-610.
-
(2004)
J. Bacteriol
, vol.186
, pp. 601-610
-
-
Martinez-Argudo, I.1
Little, R.2
Shearer, N.3
Johnson, P.4
Dixon, R.5
-
39
-
-
0027294918
-
Negative regulation of sigma 54-dependent dctA expression by the transcriptional activator DctD, J
-
Labes, M. and Finan, T. M. 1993, Negative regulation of sigma 54-dependent dctA expression by the transcriptional activator DctD, J Bacteriol., 175, 2674-2681.
-
(1993)
Bacteriol
, vol.175
, pp. 2674-2681
-
-
Labes, M.1
Finan, T.M.2
-
40
-
-
4143110958
-
Genome-wide comparison of the His-to-Asp phosphorelay signaling components of three symbiotic genera of Rhizobia
-
Hagiwara, D., Yamashino, T. and Mizuno, T. 2004, Genome-wide comparison of the His-to-Asp phosphorelay signaling components of three symbiotic genera of Rhizobia, DNA Res., 11, 57-65.
-
(2004)
DNA Res
, vol.11
, pp. 57-65
-
-
Hagiwara, D.1
Yamashino, T.2
Mizuno, T.3
-
41
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
Rain, J. C., Selig, L., De Reuse, H., et al. 2001, The protein-protein interaction map of Helicobacter pylori, Nature, 409, 211-215.
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
-
42
-
-
0036148388
-
Investigation of in vivo cross-talk between key two-component systems of Escherichia coli
-
Verhamme, D. T., Arents, J. C., Postma, P. W., Crielaard, W. and Hellingwerf, K. J. 2002, Investigation of in vivo cross-talk between key two-component systems of Escherichia coli, Microbiology, 148, 69-78.
-
(2002)
Microbiology
, vol.148
, pp. 69-78
-
-
Verhamme, D.T.1
Arents, J.C.2
Postma, P.W.3
Crielaard, W.4
Hellingwerf, K.J.5
-
43
-
-
0033669189
-
A network of protein-protein interactions in yeast
-
Schwikowski, B., Uetz, P. and Fields, S. 2000, A network of protein-protein interactions in yeast, Nat. Biotechnol., 18, 1257-1261.
-
(2000)
Nat. Biotechnol
, vol.18
, pp. 1257-1261
-
-
Schwikowski, B.1
Uetz, P.2
Fields, S.3
-
44
-
-
0242268461
-
Predicting protein functions from redundancies in large-scale protein interaction networks
-
Samanta, M. P. and Liand, S. 2003, Predicting protein functions from redundancies in large-scale protein interaction networks, Proc. Natl. Acad. Sci. USA, 100, 12579-12583.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12579-12583
-
-
Samanta, M.P.1
Liand, S.2
-
45
-
-
18744411277
-
Accurate extraction of functional associations between proteins based on common interaction partners and common domains
-
Okada, K., Kanaya, S. and Asai, K. 2005, Accurate extraction of functional associations between proteins based on common interaction partners and common domains, Bioinformatics, 21, 2043-2048.
-
(2005)
Bioinformatics
, vol.21
, pp. 2043-2048
-
-
Okada, K.1
Kanaya, S.2
Asai, K.3
|