Full genomic analyses of two human G2P[4] rotavirus strains detected in 2005: Identification of a caprine-like VP3 gene

Journal of General Virology

Volumn 92, Issue 5, 2011, Pages 1222-1227

  Ghosh, Souvik ^a   Paul, Shyamal Kumar ^b   Hossain, Mohammad Akram ^b   Alam, Mohammed Mahbub ^c   Ahmed, Muzahed Uddin ^c   Kobayashi, Nobumichi ^a  

^a SAPPORO MEDICAL UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b MYMENSINGH MEDICAL COLLEGE   (Bangladesh)

^c BANGLADESH AGRICULTURAL UNIVERSITY   (Bangladesh)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN NSP1; PROTEIN NSP2; PROTEIN NSP3; PROTEIN NSP5 PROTEIN; PROTEIN VP1; PROTEIN VP2; PROTEIN VP3; PROTEIN VP4; PROTEIN VP6; PROTEIN VP7; ROTAVIRUS NONSTRUCTURAL PROTEIN 4; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; GENETIC ANALYSIS; GENOTYPE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; ROTAVIRUS; VIRUS GENE; VIRUS STRAIN;

CAPSID PROTEINS; CLUSTER ANALYSIS; GENOME, VIRAL; HUMANS; INFANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINATION, GENETIC; RNA, VIRAL; ROTAVIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

ANIMALIA; CAPRA; ROTAVIRUS;

EID: 79955615979     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.029868-0     Document Type: Article

References (39)

1. Abe, M., Ito, N., Morikawa, S., Takasu, M., Murase, T., Kawashima, T., Kawai, Y., Kohara, J. & Sugiyama, M. (2009). Molecular epidemiology of rotaviruses among healthy calves in Japan: isolation of a novel bovine rotavirus bearing new P and G genotypes. Virus Res 144, 250- 257.
2. Abe, M., Ito, N., Masatani, T., Nakagawa, K., Yamaoka, S., Kanamaru, Y., Suzuki, H., Shibano, K., Arashi, Y. & Sugiyama, M. (2011). Whole genome characterization of new bovine rotavirus G21P[29] and G24P[33] strains provides evidence for interspecies transmission. J Gen Virol 92, 952-960.
3. Antunes, H., Afonso, A., Iturriza, M., Martinho, I., Ribeiro, C., Rocha, S., Magalhães, C., Carvalho, L., Branca, F. & Gray, J. (2009). G2P[4] the most prevalent rotavirus genotype in 2007 winter season in an European non-vaccinated population. J Clin Virol 45, 76-78.
4. Bányai, K., Papp, H., Dandár, E., Molnár, P., Mihály, I., Van Ranst, M., Martella, V. & Matthijnssens, J. (2010). Whole genome sequencing and phylogenetic analysis of a zoonotic human G8P[14] rotavirus strain. Infect Genet Evol 10, 1140-1144.
5. Chen, Y., Wen, Y., Liu, X., Xiong, X., Cao, Z., Zhao, Q., Yu, Y., Yin, X., Li, C. & Fan, Y. (2008). Full genomic analysis of human rotavirus strain TB-Chen isolated in China. Virology 375, 361-373.
6. Collins, P. J., Martella, V., Buonavoglia, C. & O'Shea, H. (2010). Identification of a G2-like porcine rotavirus bearing a novel VP4 type, P[32]. Vet Res 41, 73.
7. Cook, J. P. & McCrae, M. A. (2004). Sequence analysis of the guanylyltransferase (VP3) of group A rotaviruses. J Gen Virol 85, 929- 932.
8. Esona, M. D., Mijatovic-Rustempasic, S., Conrardy, C., Tong, S., Kuzmin, I. V., Agwanda, B., Breiman, R. F., Banyai, K., Niezgoda, M. & other authors (2010). Reassortant group A rotavirus from straw-colored fruit bat (Eidolon helvum). Emerg Infect Dis 16, 1844-1852.
9. Esona, M. D., Banyai, K., Foytich, K., Freeman, M., Mijatovic-Rustempasic, S., Hull, J., Kerin, T., Steele, A. D., Armah, G. E. & Geyer, A. (2011). Genomic characterization of human rotavirus G10 strains from the African Rotavirus Network: relationship to animal rotaviruses. Infect Genet Evol 11, 237-241.
10. Estes, M. K. & Kapikian, A. Z. (2007). Rotaviruses and their replication. In Fields Virology, 5th edn, pp. 1917-1974. Edited by B. N. Fields, D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman & S. E. Straus. Philadelphia, PA: Lippincott, Williams & Wilkins.
11. Gentsch, J. R., Glass, R. I., Woods, P., Gouvea, V., Gorziglia, M., Flores, J., Das, B. K. & Bhan, M. K. (1992). Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30, 1365-1373.
12. Ghosh, S., Alam, M. M., Ahmed, M. U., Talukdar, R. I., Paul, S. K. & Kobayashi, N. (2010a). Complete genome constellation of a caprine group A rotavirus strain reveals common evolution with ruminant and human rotavirus strains. J Gen Virol 91, 2367-2373.
13. Ghosh, S., Kobayashi, N., Nagashima, S., Chawla-Sarkar, M., Krishnan, T., Ganesh, B. & Naik, T. N. (2010b). Full genomic analysis and possible origin of a porcine G12 rotavirus strain RU172. Virus Genes 40, 382-388.
14. Ghosh, S., Gatheru, Z., Nyangao, J., Adachi, N., Urushibara, N. & Kobayashi, N. (2011). Full genomic analysis of a simian SA11-like G3P[2] rotavirus strain isolated from an asymptomatic infant: identification of novel VP1, VP6 and NSP4 genotypes. Infect Genet Evol 11, 57-63
15. Greenberg, H. B. & Estes, M. K. (2009). Rotaviruses: from pathogenesis to vaccination. Gastroenterology 136, 1939-1951.
16. Gurgel, R. Q., Cuevas, L. E., Vieira, S. C., Barros, V. C., Fontes, P. B., Salustino, E. F., Nakagomi, O., Nakagomi, T., Dove, W. & other authors (2007). Predominance of rotavirus P[4]G2 in a vaccinated population, Brazil. Emerg Infect Dis 13, 1571-1573.
17. Heiman, E. M., McDonald, S. M., Barro, M., Taraporewala, Z. F., Bar-Magen, T. & Patton, J. T. (2008). Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82, 11106-11116.
18. Hoshino, Y., Saif, L. J., Kang, S. Y., Sereno, M. M., Chen, W. K. & Kapikian, A. Z. (1995). Identification of group A rotavirus genes associated with virulence of a porcine rotavirus and host range restriction of a human rotavirus in the gnotobiotic piglet model. Virology 209, 274-280.
19. Kirkwood, C. D., Boniface, K., Bishop, R. F., Barnes, G. L. & Australian Rotavirus Surveillance Group (2009). Australian Rotavirus Surveillance Program annual report, 2008/2009. Commun Dis Intell 33, 382-388.
20. Martella, V., Bányai, K., Matthijnssens, J., Buonavoglia, C. & Ciarlet, M. (2010). Zoonotic aspects of rotaviruses. Vet Microbiol 140, 246-255.
21. Marťinez, M., Amarilla, A. A., Galeano, M. E., Aquino, V. H., Fariña, N., Russomando, G. & Parra, G. I. (2010). Predominance of rotavirus G2P[4] and emergence of G12P[9] strains in Asuncio ́n, Paraguay, 2006-2007. Arch Virol 155, 525-533.
22. Matthijnssens, J., Ciarlet, M., Heiman, E., Arijs, I., Delbeke, T., McDonald, S. M., Palombo, E. A., Iturriza-Gómara, M., Maes, P. & other authors (2008a). Full genome-based classification of rota-viruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82, 3204-3219.
23. Matthijnssens, J., Ciarlet, M., Rahman, M., Attoui, H., Bányai, K., Estes, M. K., Gentsch, J. R., Iturriza-Gó mara, M., Kirkwood C. D. & other authors (2008b). Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 153, 1621-1629.
24. Matthijnssens, J., Joelsson, D. B., Warakomski, D. J., Zhou, T., Mathis, P. K., Van Maaren, M. H., Ranheim, T. S. & Ciarlet, M. (2010). Molecular and biological characterization of the 5 human-bovine rotavirus(WC3)-based reassortant strains of the pentavalent rotavirus vaccine, RotaTeq. Virology 403, 111-127.
25. Matthijnssens, J., Rahman, M. & Van Ranst, M. (2008c). Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J Gen Virol 89, 2630-2635.
26. McDonald, S. M., Matthijnssens, J., McAllen, J. K., Hine, E., Overton, L., Wang, S., Lemey, P., Zeller, M., Van Ranst, M. & other authors (2009). Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations. PLoS Pathog 5, e1000634.
27. Paul, S. K., Kobayashi, N., Nagashima, S., Ishino, M., Watanabe, S., Alam, M. M., Ahmed, M. U., Hossain, M. A. & Naik, T. N. (2008). Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults. Arch Virol 153, 1999-2012.
28. Pun, S. B., Nakagomi, T., Sherchand, J. B., Pandey, B. D., Cuevas, L. E., Cunliffe, N. A., Hart, C. A. & Nakagomi, O. (2007). Detection of G12 human rotaviruses in Nepal. Emerg Infect Dis 13, 482-484.
29. Rahman, M., Matthijnssens, J., Saiada, F., Hassan, Z., Heylen, E., Azim, T. & Van Ranst, M. (2010). Complete genomic analysis of a Bangladeshi G1P[8] rotavirus strain detected in 2003 reveals a close evolutionary relationship with contemporary human Wa-like strains. Infect Genet Evol 10, 746-754.
30. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
31. Santos, N. & Hoshino, Y. (2005). Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15, 29-56.
32. Schumann, T., Hotzel, H., Otto, P. & Johne, R. (2009). Evidence of interspecies transmission and reassortment among avian group A rotaviruses. Virology 386, 334-343.
33. Solberg, O. D., Hasing, M. E., Trueba, G. & Eisenberg, J. N. (2009). Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus. Virology 385, 58-67.
34. Steyer, A., Bajzelj, M., Iturriza-Gómara, M., Mladenova, Z., Korsun, N. & Poljsak-Prijatelj, M. (2010). Molecular analysis of human group A rotavirus G10P[14] genotype in Slovenia. J Clin Virol 49, 121-125.
35. Subodh, S., Bhan, M. K. & Ray, P. (2006). Genetic characterization of VP3 gene of group A rotaviruses. Virus Genes 33, 143-145.
36. Taniguchi, K., Wakasugi, F., Pongsuwanna, Y., Urasawa, T., Ukae, S., Chiba, S. & Urasawa, S. (1992). Identification of human and bovine rotavirus serotypes by polymerase chain reaction. Epidemiol Infect 109, 303-312.
37. Ursu, K., Kisfali, P., Rigó, D., Ivanics, E., Erdéyi, K., Dán, A., Melegh, B., Martella, V. & Bányai, K. (2009). Molecular analysis of the VP7 gene of pheasant rotaviruses identifies a new genotype, designated G23. Arch Virol 154, 1365-1369.
38. Vesikari, T., Matson, D. O., Dennehy, P., Van Damme, P., Santosham, M., Rodriguez, Z., Dallas, M. J., Heyse, J. F., Goveia, M. G. & other authors (2006). Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine. N Engl J Med 354, 23-33.
39. Wang, Y. H., Kobayashi, N., Nagashima, S., Zhou, X., Ghosh, S., Peng, J. S., Hu, Q., Zhou, D. J. & Yang, Z. Q. (2010). Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China. J Med Virol 82, 1094-1102.