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Volumn 90, Issue 4, 2011, Pages 1347-1359

Distribution of dTDP-glucose-4,6-dehydratase gene and diversity of potential glycosylated natural products in marine sediment-derived bacteria

Author keywords

6 Deoxyhexose (6DOH); dTDP glucose 4,6 dehydratase (dTGD); Glycosylated compounds; Marine sediment derived bacteria

Indexed keywords

6-DEOXYHEXOSE (6DOH); BIOSYNTHETIC PATHWAY; CHEMICAL DIVERSITY; CHEMICAL PURIFICATION; DTDP-GLUCOSE-4,6-DEHYDRATASE (DTGD); GENE FRAGMENTS; GENOME SEQUENCES; GLYCOSYLATED; ISOLATED STRAINS; MARINE MICROORGANISM; MARINE SEDIMENT-DERIVED BACTERIA; MARINE SEDIMENTS; NATURAL PRODUCTS; OPERATIONAL TAXONOMIC UNITS; PHYLOGENETIC ANALYSIS; PHYLOGENETIC RELATIONSHIPS; RAPID IDENTIFICATION; STRUCTURE IDENTIFICATION; STRUCTURE PREDICTION;

EID: 79955563542     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-011-3112-y     Document Type: Article
Times cited : (19)

References (33)
  • 1
    • 19944362206 scopus 로고    scopus 로고
    • New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: Detection and distribution of these biosynthetic gene sequences in major taxonomic groups
    • DOI 10.1007/s00248-004-0249-6
    • A Ayuso-Sacido O Genilloud 2005 New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups Microb Ecol 49 10 24 10.1007/s00248-004-0249-6 1:CAS:528:DC%2BD2MXjslyis74%3D (Pubitemid 40747800)
    • (2005) Microbial Ecology , vol.49 , Issue.1 , pp. 10-24
    • Ayuso-Sacido, A.1    Genilloud, O.2
  • 2
    • 0030221812 scopus 로고    scopus 로고
    • A general approach for cloning and characterizing dNDP-glucose dehydratase genes from actinomycetes
    • 10.1111/j.1574-6968.1996.tb08384.x
    • H Deckera S Gaisserb S Pelzera P Schneidera L Westrichb W Wohllebena A Bechtholdb 1996 A general approach for cloning and characterizing dNDP-glucose dehydratase genes from actinomycetes FEMS Microbiol Lett 141 195 201 10.1111/j.1574-6968.1996.tb08384.x
    • (1996) FEMS Microbiol Lett , vol.141 , pp. 195-201
    • Deckera, H.1    Gaisserb, S.2    Pelzera, S.3    Schneidera, P.4    Westrichb, L.5    Wohllebena, W.6    Bechtholdb, A.7
  • 3
    • 3242812837 scopus 로고    scopus 로고
    • Identification and functional analysis of dTDP-glucose-4,6-dehydratase gene and its linked gene cluster in an aminoglycoside antibiotics producer of Streptomyces tenebrarius H6
    • Y Du T Li YG Wang H Xia 2004 Identification and functional analysis of dTDP- glucose-4, 6-dehydratase gene and its linked gene cluster in an aminoglycoside antibiotics producer of Streptomyces tenebrarius H6 Curr Microbiol 49 99 107 10.1007/s00284-004-4212-z 1:CAS:528:DC%2BD2cXmtlyltLo%3D (Pubitemid 38970714)
    • (2004) Current Microbiology , vol.49 , Issue.2 , pp. 99-107
    • Du, Y.1    Li, T.2    Wang, Y.G.3    Xia, H.4
  • 5
    • 0038148677 scopus 로고    scopus 로고
    • Cloning, sequencing and heterologous expression of the medermycin biosynthetic gene cluster of Streptomyces sp. AM-7161: Towards comparative analysis of the benzoisochromanequinone gene clusters
    • K Ichinose M Ozawa K Itou K Kunieda Y Ebizuka 2003 Cloning, sequencing and heterologous expression of the medermycin biosynthetic gene cluster of Streptomyces sp. AM-7161: towards comparative analysis of the benzoisochromanequinone gene clusters Microbiol 149 1633 1645 10.1099/mic.0.26310-0 1:CAS:528:DC%2BD3sXlvVCjt7s%3D (Pubitemid 36874311)
    • (2003) Microbiology , vol.149 , Issue.7 , pp. 1633-1645
    • Ichinose, K.1    Ozawa, M.2    Itou, K.3    Kunieda, K.4    Ebizuka, Y.5
  • 6
    • 0001220414 scopus 로고
    • Separation of carbohydrates on borate-impregnated silica gel G plates
    • 10.1016/S0021-9673(01)80341-1 1:CAS:528:DyaF2MXkt1Shsbs%3D
    • H Jacin AR Mishkin 1965 Separation of carbohydrates on borate-impregnated silica gel G plates J Chromatogr 18 170 173 10.1016/S0021-9673(01)80341-1 1:CAS:528:DyaF2MXkt1Shsbs%3D
    • (1965) J Chromatogr , vol.18 , pp. 170-173
    • Jacin, H.1    Mishkin, A.R.2
  • 7
    • 67649379025 scopus 로고    scopus 로고
    • Identification and manipulation of the caprazamycin gene cluster lead to new simplified liponucleoside antibiotics and give insights into the biosynthetic pathway
    • 10.1074/jbc.M901258200 1:CAS:528:DC%2BD1MXmtlChtbs%3D
    • L Kaysser L Lutsch S Siebenberg E Wemakor B Kammerer B Gust 2009 Identification and manipulation of the caprazamycin gene cluster lead to new simplified liponucleoside antibiotics and give insights into the biosynthetic pathway J Biol Chem 284 14987 14996 10.1074/jbc.M901258200 1:CAS:528: DC%2BD1MXmtlChtbs%3D
    • (2009) J Biol Chem , vol.284 , pp. 14987-14996
    • Kaysser, L.1    Lutsch, L.2    Siebenberg, S.3    Wemakor, E.4    Kammerer, B.5    Gust, B.6
  • 8
    • 77953630416 scopus 로고    scopus 로고
    • Formation and attachment of the deoxysugar moiety and assembly of the gene cluster for caprazamycin biosynthesis
    • 10.1128/AEM.02740-09 1:CAS:528:DC%2BC3cXptVems70%3D
    • L Kaysser E Wemakor S Siebenberg JA Salas JK Sohng B Kammerer B Gust 2010 Formation and attachment of the deoxysugar moiety and assembly of the gene cluster for caprazamycin biosynthesis Appl Environ Microbiol 76 4008 4018 10.1128/AEM.02740-09 1:CAS:528:DC%2BC3cXptVems70%3D
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4008-4018
    • Kaysser, L.1    Wemakor, E.2    Siebenberg, S.3    Salas, J.A.4    Sohng, J.K.5    Kammerer, B.6    Gust, B.7
  • 9
    • 0002334440 scopus 로고    scopus 로고
    • Chemical and biochemical aspects of deoxysugars and deoxysugar oligosaccharides
    • 10.1007/BFb0119234 1:CAS:528:DyaK2sXktVCnsbc%3D
    • A Kirschning AF Bechthold J Rohr 1997 Chemical and biochemical aspects of deoxysugars and deoxysugar oligosaccharides Top Curr Chem 188 1 84 10.1007/BFb0119234 1:CAS:528:DyaK2sXktVCnsbc%3D
    • (1997) Top Curr Chem , vol.188 , pp. 1-84
    • Kirschning, A.1    Bechthold, A.F.2    Rohr, J.3
  • 10
    • 0027998112 scopus 로고
    • Pathways and mechanisms in the biogenesis of novel deoxysugars by bacteria
    • HW Liu JS Thorson 1994 Pathways and mechanisms in the biogenesis of novel deoxysugars by bacteria Annu Rev Microbiol 48 223 256 10.1146/annurev.mi.48. 100194.001255 1:CAS:528:DyaK2cXmslKht78%3D (Pubitemid 24334097)
    • (1994) Annual Review of Microbiology , vol.48 , pp. 223-256
    • Liu, H.-W.1    Thorson, J.S.2
  • 12
    • 20144363202 scopus 로고    scopus 로고
    • The neocarzinostatin biosynthetic gene cluster from Streptomyces carzinostaticus ATCC 15944 involving two iterative type I polyketide synthases
    • DOI 10.1016/j.chembiol.2004.12.013
    • W Liu K Nonaka L Nie J Zhang SD Christenson J Bae SGV Lanen E Zazopoulos CM Farnet CF Yang B Shen 2005 The neocarzinostatin biosynthetic gene cluster from Streptomyces carzinostaticus ATCC 15944 involving two iterative type I polyketide synthases Chem Biol 12 293 302 10.1016/j.chembiol.2004.12.013 1:CAS:528:DC%2BD2MXis1Knu7k%3D (Pubitemid 40406276)
    • (2005) Chemistry and Biology , vol.12 , Issue.3 , pp. 293-302
    • Liu, W.1    Nonaka, K.2    Nie, L.3    Zhang, J.4    Christenson, S.D.5    Bae, J.6    Van Lanen, S.G.7    Zazopoulos, E.8    Farnet, C.M.9    Yang, C.F.10    Shen, B.11
  • 13
    • 0034801471 scopus 로고    scopus 로고
    • Rhamnose biosynthesis pathway supplies precursors for primary and secondary metabolism in Saccharopolyspora spinosa
    • DOI 10.1128/JB.183.19.5632-5638.2001
    • K Madduri C Waldron DJ Merlo 2001 Rhamnose biosynthesis pathway supplies precursors for primary and secondary metabolism in Saccharopolyspora spinosa J Bacteriol 183 5632 5638 10.1128/JB.183.19.5632-5638.2001 1:CAS:528: DC%2BD3MXmvF2ms7g%3D (Pubitemid 32898609)
    • (2001) Journal of Bacteriology , vol.183 , Issue.19 , pp. 5632-5638
    • Madduri, K.1    Waldron, C.2    Merlo, D.J.3
  • 14
    • 17844407663 scopus 로고    scopus 로고
    • Microbial genomics as a guide to drug discovery and structural elucidation: ECO-02301, a novel antifungal agent, as an example
    • DOI 10.1021/np0401664
    • JB McAlpine BO Bachmann M Piraee S Tremblay AM Alarco E Zazopoulos CM Farnet 2005 Microbial genomics as a guide to drug discovery and structural elucidation: ECO-02301, a novel antifungal agent, as an example J Nat Prod 68 493 496 10.1021/np0401664 1:CAS:528:DC%2BD2MXit1Krt7s%3D (Pubitemid 40586306)
    • (2005) Journal of Natural Products , vol.68 , Issue.4 , pp. 493-496
    • McAlpine, J.B.1    Bachmann, B.O.2    Piraee, M.3    Tremblay, S.4    Alarco, A.-M.5    Zazopoulos, E.6    Farnet, C.M.7
  • 16
    • 38149121365 scopus 로고    scopus 로고
    • Discovery and molecular engineering of sugar-containing natural product biosynthetic pathways in actinomycetes
    • 1:CAS:528:DC%2BD1cXhslSlu7k%3D
    • TJ Oh SJ Mo YJ Yoon JK Sohng 2007 Discovery and molecular engineering of sugar-containing natural product biosynthetic pathways in actinomycetes J Microbiol Biotechnol 17 1909 1921 1:CAS:528:DC%2BD1cXhslSlu7k%3D
    • (2007) J Microbiol Biotechnol , vol.17 , pp. 1909-1921
    • Oh, T.J.1    Mo, S.J.2    Yoon, Y.J.3    Sohng, J.K.4
  • 17
    • 0022357264 scopus 로고
    • Lactoquinomycin, a novel anticancer antibiotic
    • 1:CAS:528:DyaL28XmvVKmtA%3D%3D
    • T Okabe K Nomoto H Funabashi S Okuda H Suzuki N Tanaka 1985 Lactoquinomycin, a novel anticancer antibiotic J Antibiot 38 1333 1336 1:CAS:528:DyaL28XmvVKmtA%3D%3D
    • (1985) J Antibiot , vol.38 , pp. 1333-1336
    • Okabe, T.1    Nomoto, K.2    Funabashi, H.3    Okuda, S.4    Suzuki, H.5    Tanaka, N.6
  • 18
    • 0028052780 scopus 로고
    • Pathway engineering in secondary metabolite-producing actinomycetes
    • W Piepersberg 1994 Pathway engineering in secondary metabolite-producing actinomycetes Crit Rev Biotechnol 14 251 285 10.3109/07388554409079835 1:CAS:528:DyaK2cXmvF2itrw%3D (Pubitemid 2160551)
    • (1994) Critical Reviews in Biotechnology , vol.14 , Issue.3 , pp. 251-285
    • Piepersberg, W.1
  • 19
    • 0034406527 scopus 로고    scopus 로고
    • Inhibition of the ribosomal peptidyl transferase reaction by the mycarose moiety of the antibiotics carbomycin, spiramycin and tylosin
    • 10.1006/jmbi.2000.4229
    • SM Poulsena C Kofoeda B Vestera 2000 Inhibition of the ribosomal peptidyl transferase reaction by the mycarose moiety of the antibiotics carbomycin, spiramycin and tylosin J Mol Biol 304 471 481 10.1006/jmbi.2000.4229
    • (2000) J Mol Biol , vol.304 , pp. 471-481
    • Poulsena, S.M.1    Kofoeda, C.2    Vestera, B.3
  • 20
    • 42949168430 scopus 로고    scopus 로고
    • Biosynthesis of elloramycin in Streptomyces olivaceus requires glycosylation by enzymes encoded outside the aglycon cluster
    • DOI 10.1099/mic.0.2007/014035-0
    • A Ramos F Lombó AF Braña J Rohr C Méndez JA Salas 2008 Biosynthesis of elloramycin in Streptomyces olivaceus requires glycosylation by enzymes encoded outside the aglycon cluster Microbiol 154 781 788 10.1099/mic.0.2007/014035-0 1:CAS:528:DC%2BD1cXjvFers7k%3D (Pubitemid 351736292)
    • (2008) Microbiology , vol.154 , Issue.3 , pp. 781-788
    • Ramos, A.1    Lombo, F.2    Brana, A.F.3    Rohr, J.4    Mendez, C.5    Salas, J.A.6
  • 21
    • 0345097432 scopus 로고    scopus 로고
    • Biosynthesis of O-antigens: Genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly
    • DOI 10.1016/j.carres.2003.07.009
    • G Samuel P Reeves 2003 Biosynthesis of O-antigens: genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly Carbohydr Res 338 2503 2519 10.1016/j.carres.2003.07.009 1:CAS:528: DC%2BD3sXps1egt78%3D (Pubitemid 37509950)
    • (2003) Carbohydrate Research , vol.338 , Issue.23 , pp. 2503-2519
    • Samuel, G.1    Reeves, P.2
  • 22
    • 0027202811 scopus 로고
    • Genetics of lipopolysaccharide biosynthesis in enteric bacteria
    • CA Schnaitman JD Klena 1993 Genetics of lipopolysaccharide biosynthesis in enteric bacteria Microbiol Mol Biol Rev 57 655 682 1:CAS:528: DyaK3sXmsVGjs7g%3D (Pubitemid 23262513)
    • (1993) Microbiological Reviews , vol.57 , Issue.3 , pp. 655-682
    • Schnaitman, C.A.1    Klena, J.D.2
  • 23
    • 0026471501 scopus 로고
    • Gene probes for the detection of 6-deoxyhexose metabolism in secondary metabolite-producing Streptomycetes
    • 10.1111/j.1574-6968.1992.tb05149.x 1:CAS:528:DyaK38XhsVCqtLY%3D
    • M Stockmann W Piepersberg 1992 Gene probes for the detection of 6-deoxyhexose metabolism in secondary metabolite-producing Streptomycetes FEMS Microbiol Lett 90 185 189 10.1111/j.1574-6968.1992.tb05149.x 1:CAS:528:DyaK38XhsVCqtLY%3D
    • (1992) FEMS Microbiol Lett , vol.90 , pp. 185-189
    • Stockmann, M.1    Piepersberg, W.2
  • 25
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 26
    • 34247626294 scopus 로고    scopus 로고
    • Unusual sugar biosynthesis and natural product glycodiversification
    • DOI 10.1038/nature05814, PII NATURE05814
    • CJ Thibodeaux CE Melançon HW Liu 2007 Unusual sugar biosynthesis and natural product glycodiversification Nature 446 1008 1016 10.1038/nature05814 1:CAS:528:DC%2BD2sXksFeku7c%3D (Pubitemid 46676062)
    • (2007) Nature , vol.446 , Issue.7139 , pp. 1008-1016
    • Thibodeaux, C.J.1    Melancon, C.E.2    Liu, H.-W.3
  • 27
    • 0019435186 scopus 로고
    • 13C nuclear magnetic resonance spectroscopy
    • DOI 10.1016/S0040-4020(01)92428-7
    • 13C nuclear magnetic resonance spectroscopy Tetrahedron 37 551 558 10.1016/S0040-4020(01)92428-7 1:CAS:528:DyaL3MXkvFyhs78%3D (Pubitemid 11144220)
    • (1981) Tetrahedron , vol.37 , Issue.3 , pp. 551-558
    • Thiem, J.1    Meyer, B.2
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 29
    • 3843086796 scopus 로고    scopus 로고
    • Genes and enzymes involved in deoxysugar biosynthesis in bacteria
    • DOI 10.1039/a804431g
    • A Trefzer JA Salasb A Bechthold 1999 Genes and enzymes involved in deoxysugar biosynthesis in bacteria Nat Prod Rep 16 283 299 10.1039/a804431g 1:CAS:528:DyaK1MXjtF2jtrs%3D (Pubitemid 29280021)
    • (1999) Natural Product Reports , vol.16 , Issue.3 , pp. 283-299
    • Trefzer, A.1    Salas, J.A.2    Bechthold, A.3
  • 31
    • 37549061065 scopus 로고    scopus 로고
    • Isolation and identification of newly isolated antagonistic Streptomyces sp. Strain AP 19-2 producing chromomycins
    • 1:CAS:528:DC%2BD1cXitVSgu7c%3D
    • XC Wu WF Chen CD Qian O Li P Li YP Wen 2007 Isolation and identification of newly isolated antagonistic Streptomyces sp. Strain AP 19-2 producing chromomycins J Microbiol 45 499 504 1:CAS:528:DC%2BD1cXitVSgu7c%3D
    • (2007) J Microbiol , vol.45 , pp. 499-504
    • Wu, X.C.1    Chen, W.F.2    Qian, C.D.3    Li, O.4    Li, P.5    Wen, Y.P.6
  • 32
    • 19544371238 scopus 로고    scopus 로고
    • A microwave-based method for genomic DNA extraction from actinomycetes
    • 1:CAS:528:DC%2BD2cXhtVKmsLbN
    • P Xu LI WJ LH Xu CL Jiang 2003 A microwave-based method for genomic DNA extraction from actinomycetes Microbiology (Beijing) 30 82 84 1:CAS:528:DC%2BD2cXhtVKmsLbN
    • (2003) Microbiology (Beijing) , vol.30 , pp. 82-84
    • Xu, P.1    L, I.W.J.2    Xu, L.H.3    Jiang, C.L.4
  • 33


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