Thermo-responsive molecular switches for ATP using hairpin DNA aptamers

Biosensors and Bioelectronics

Volumn 26, Issue 9, 2011, Pages 3949-3952

  Goda, Tatsuro ^a   Miyahara, Yuji ^a  

^a TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

Author keywords

Biosensor; Electrochemical impedance spectroscopy; Hairpin DNA aptamer; Self assembled monolayer; Thermo responsiveness

Indexed keywords

APTAMERS; CONFORMATIONAL TRANSITIONS; DIAGNOSTIC SYSTEMS; DNA APTAMERS; HAIRPIN DNA APTAMER; HIGH SENSITIVITY; LABEL-FREE DETECTION; MOLECULAR SWITCHES; NANO-SWITCHES; OPEN LOOPS; SECONDARY STRUCTURES; STRUCTURAL DISPLACEMENT; TARGET BINDING; TEMPERATURE-INDUCED; THERMO-RESPONSIVE; THERMO-RESPONSIVENESS;

BIOSENSORS; DNA; ELECTROCHEMICAL CORROSION; NUCLEIC ACIDS; OLIGONUCLEOTIDES; SELF ASSEMBLED MONOLAYERS; STRUCTURAL DESIGN;

ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY;

ADENOSINE TRIPHOSPHATE; APTAMER; GOLD; HAIRPIN DNA APTAMER; UNCLASSIFIED DRUG;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DISSOCIATION; DNA CONFORMATION; ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY; EPIFLUORESCENCE MICROSCOPY; HEAT SENSITIVITY; LIGAND BINDING; MOLECULAR DYNAMICS; MOLECULAR PROBE; MOLECULAR RECOGNITION; MOLECULAR SWITCH; SENSITIVITY AND SPECIFICITY; CHEMISTRY; CONFORMATION; GENETIC PROCEDURES; ISOLATION AND PURIFICATION;

ADENOSINE TRIPHOSPHATE; APTAMERS, NUCLEOTIDE; BIOSENSING TECHNIQUES; GOLD; NUCLEIC ACID CONFORMATION;

EID: 79955474551     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2011.02.041     Document Type: Article

References (38)

1. Bock L., Griffin L., Latham J., Vermaas E., Toole J. Nature 1992, 355:564-566.
2. Bridonneau P., Chang Y.F., Buvoli A.V., O'Connell D., Parma D. Antisense Nucl. Acid Drug Dev. 1999, 9(1):1-11.
3. Chinnapen D.J., Sen D. Biochemistry 2002, 41(16):5202-5212.
4. Dang C., Jayasena S.D. J. Mol. Biol. 1996, 264(2):268-278.
5. Elowe N.H., Nutiu R., Allah-Hassani A., Cechetto J.D., Hughes D.W., Li Y.F., Brown E.A. Angew. Chem. Int. Ed. 2006, 45(34):5648-5652.
6. Famulok M., Hartig J.S., Mayer G. Chem. Rev. 2007, 107(9):3715-3743.
7. Fromherz P., Offenhäusser A., Vetter T., Weis J. Science 1991, 252:1290-1293. (5010).
8. German I., Buchanan D.D., Kennedy R.T. Anal. Chem. 1998, 70(21):4540-4545.
9. Hermann T., Patel D. Science 2000, 287(5454):820-825.
10. Hicke B.J., Watson S.R., Koenig A., Lynott C.K., Bargatze R.F., Chang Y.F., Ringquist S., Moon-McDermott L., Jennings S., Fitzwater T., Han H.L., Varki N., Albinana I., Willis M.C., Varki A., Parma D. J. Clin. Invest. 1996, 98(12):2688-2692.
11. Huizenga D.E., Szostak J.W. Biochemistry 1995, 34(2):656-665.
12. Jayasena S. Clin. Chem. 1999, 45:1628-1650.
13. Kai Z., Zhu X.L., Jing W., Xu L.L., Li G.X. Anal. Chem. 2010, 82(8):3207-3211.
14. Li D., Song S., Fan C. Acc. Chem. Res. 2010, 43(5):631-641.
15. Lin Y., Jayasena S.D. J. Mol. Biol. 1997, 271(1):100-111.
16. Liu J.W., Cao Z.H., Lu Y. Chem. Rev. 2009, 109(5):1948-1998.
17. Macaya R., Schultze P., Smith F., Roe J., Feigon J. Proc. Natl. Acad. Sci. U.S.A. 1993, 90(8):3745-3749.
18. Malmstadt N., Hoffman A.S., Stayton P.S. Lab. Chip 2004, 4(4):412-415.
19. Miranda-Castro R., de-los-Santos-Alvarez N., Lobo-Castanon M., Miranda-Ordieres A., Tunon-Blanco P. Electroanalysis 2009, 21(19):2077-2090.
20. Nutiu R., Li Y. J. Am. Chem. Soc. 2003, 125(16):4771-4778.
21. O'Connell D., Koenig A., Jennings S., Hicke B., Han H.L., Fitzwater T., Chang Y.F., Varki N., Parma D., Varki A. Proc. Natl. Acad. Sci. U.S.A. 1996, 93(12):5883-5887.
22. Piatek A., Tyagi S., Pol A., Telenti A., Miller L., Kramer F., Alland D. Nat. Biotechnol. 1998, 16:359-363.
23. Privett B.J., Shin J.H., Schoenfisch M.H. Anal. Chem. 2010, 82(12):4723-4741.
24. Radi A.E., Acero Sánchez J.L., Baldrich E., O'Sullivan C.K. J. Am. Chem. Soc. 2006, 128(1):117-124.
25. Romig T., Bell C., Drolet D. J. Chromatogr. B 1999, 731(2):275-284.
26. Rupcich N., Nutiu R., Li Y.F., Brennan J.D. Angew. Chem. Int. Ed. 2006, 45(20):3295-3299.
27. Schoning M., Poghossian A. Analyst 2002, 127(9):1137-1151.
28. Suedee R., Seechamnanturakit V., Canyuk B., Ovatiarnporn C., Martin G.P. J. Chromatogr. A 2006, 1114(2):239-249.
29. Tang Z., Mallikaratchy P., Yang R., Kim Y., Zhu Z., Wang H., Tan W. J. Am. Chem. Soc. 2008, 130(34):11268-11269.
30. Tyagi S., Kramer F. Nat. Biotechnol. 1996, 14:303-308.
31. Tyagi S., Bratu D., Kramer F. Nat. Biotechnol. 1998, 16:49-53.
32. Umeno D., Kawasaki M., Maeda M. Bioconjug. Chem. 1998, 9(6):719-724.
33. Urata H., Nomura K., Wada S., Akagi M. Biochem. Biophys. Res. Commun. 2007, 360(2):459-463.
34. Van Hooijdonk C.A., Glade C.P., Van Erp P.E. Cytometry 1994, 17(2):185-189.
35. Willner I., Zayats M. Angew. Chem. Int. Ed. 2007, 46(34):6408-6418.
36. Wilson D., Szostak J. Annu. Rev. Biochem. 1999, 68:611-647.
37. Xu D., Yu X., Liu Z., He W., Ma Z. Anal. Chem. 2005, 77(16):5107-5113.
38. Zayats M., Huang Y., Gill R., Ma C.A., Willner I. J. Am. Chem. Soc. 2006, 128(42):13666-13667.